BO35073.complete Sequence
1093 bp assembled on 2013-12-04
GenBank Submission: KX797487
> BO35073.complete
GAAGTTATCAGTCGACATGGAAAAATATTTAACAAAAATGCCCATCAAAT
CAAAAGCAAATGAAGTTCCCAAGGAGGCGGGCGTCAAAAAGGAGACTCCC
AAAGTGGCAAGGAAAGCAACAAAAAAGGATACTCCAAAAGAGTTGAAAGA
TAAAGAAAATGCTGGAGATGATAATACGCCAAAGCAAACGAAAGGAAGAC
CCGGTAGACCGGCTGCCAAGCGAAAAAATCTGGATACTCCAGATGTGAAG
ACTGAGAAGTTAGCGATGGAGGAAGAAAATCCGCCCAAGCGCCGGAGTTC
CAGGCTGACCAGAAGCACTCGTTCAATGGCAGAGGATGGGTCTCCATCAC
CGGAGAAGGAAAAGCCCGAAAAGCTTCCCTTTATTAAATACAAGGGTGCT
ATAAAGTATTTCACGGAGAGCCAGGATATTGCGGCATCTGCTGACGATGT
TTTGCAATGGGTGGAAAAACAAAAAGATGAGGTAGTGCCCATGGCCTTCG
ACATGGAGTGGCCCTTCTCTTTCCAAACAGGACCTGGCAAGTCTGCCGTC
ATCCAGATATGCGTGGATGAAAAGTGCTGCTACATATACCAGCTGACTAA
TGTGAAGAAACTGCCTGCGGCCCTGGTGGCCCTTATCAATCATCCCAAAG
TGCGATTGCATGGCGTGAACATAAAGAACGATTTCCGAAAGCTGGCACGT
GATTTCCCCGAGGTTACAGCCGAACCACTGATAGAGAAATGCGTGGACTT
GGGTCTTTGGTGCAATGAGGTCTGTGAGACCGGCGGGCGCTGGAGCTTGG
AGCGATTAACCAACTTTATAGCCAAGAAGGCCATGGACAAAAGCAAGAAG
GTGCGCATGAGCAAGTGGCATGTCATTCCGCTGGACGAGAATCAACTAAT
GTACGCCGCCATCGATGTCTATATTGGTCAGGTTATCTATCGTGAATTGG
AACGCCGCGAGAAGGTCAAGATTAAAAATGAAGAAGAGTTCAAGGAAAAG
AACGGAGATGCTGCCTTTAAAGCAATGAAAGCATTGGGAGAGACATTTCT
GACCAAGATCAACGAGGTGACTCTGGCAAGCTTTCTAGACCAT
BO35073.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:37:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| WRNexo-RC | 1062 | CG7670-PC | 1..1059 | 17..1075 | 5280 | 99.9 | Plus |
| WRNexo-RB | 1065 | CG7670-PB | 1..1062 | 17..1075 | 5230 | 99.7 | Plus |
| WRNexo-RA | 1062 | CG7670-PA | 1..1059 | 17..1075 | 5150 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:37:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| WRNexo-RC | 1495 | CG7670-RC | 68..1126 | 17..1075 | 5280 | 99.9 | Plus |
| WRNexo-RB | 1498 | CG7670-RB | 68..1129 | 17..1075 | 5230 | 99.7 | Plus |
| WRNexo-RA | 1495 | CG7670-RA | 68..1126 | 17..1075 | 5150 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:37:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18364822..18365065 | 922..679 | 1220 | 100 | Minus |
| 3R | 32079331 | 3R | 18365121..18365345 | 678..454 | 1125 | 100 | Minus |
| 3R | 32079331 | 3R | 18365407..18365614 | 454..247 | 1040 | 100 | Minus |
| 3R | 32079331 | 3R | 18364613..18364765 | 1075..923 | 765 | 100 | Minus |
| 3R | 32079331 | 3R | 18365672..18365778 | 247..141 | 535 | 100 | Minus |
| 3R | 32079331 | 3R | 18365911..18365981 | 142..72 | 355 | 100 | Minus |
| 3R | 32079331 | 3R | 18366037..18366095 | 75..17 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:37:50 has no hits.
BO35073.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-12-04 09:59:24 Download gff for
BO35073.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| WRNexo-RC | 68..1126 | 17..1077 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:18:49 Download gff for
BO35073.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| WRNexo-RC | 68..1126 | 17..1077 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:18:49 Download gff for
BO35073.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18364611..18364765 | 923..1077 | 98 | <- | Minus |
| 3R | 18364822..18365065 | 679..922 | 100 | <- | Minus |
| 3R | 18365121..18365345 | 454..678 | 100 | <- | Minus |
| 3R | 18365408..18365613 | 248..453 | 100 | <- | Minus |
| 3R | 18365672..18365776 | 143..247 | 100 | <- | Minus |
| 3R | 18365911..18365976 | 77..142 | 100 | <- | Minus |
| 3R | 18366036..18366095 | 17..76 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-12-04 09:59:24 Download gff for
BO35073.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14190333..14190487 | 923..1077 | 98 | <- | Minus |
| arm_3R | 14190544..14190787 | 679..922 | 100 | <- | Minus |
| arm_3R | 14190843..14191067 | 454..678 | 100 | <- | Minus |
| arm_3R | 14191130..14191335 | 248..453 | 100 | <- | Minus |
| arm_3R | 14191394..14191498 | 143..247 | 100 | <- | Minus |
| arm_3R | 14191633..14191698 | 77..142 | 100 | <- | Minus |
| arm_3R | 14191758..14191817 | 17..76 | 98 | | Minus |
BO35073.pep Sequence
Translation from 16 to 1093
> BO35073.pep
MEKYLTKMPIKSKANEVPKEAGVKKETPKVARKATKKDTPKELKDKENAG
DDNTPKQTKGRPGRPAAKRKNLDTPDVKTEKLAMEEENPPKRRSSRLTRS
TRSMAEDGSPSPEKEKPEKLPFIKYKGAIKYFTESQDIAASADDVLQWVE
KQKDEVVPMAFDMEWPFSFQTGPGKSAVIQICVDEKCCYIYQLTNVKKLP
AALVALINHPKVRLHGVNIKNDFRKLARDFPEVTAEPLIEKCVDLGLWCN
EVCETGGRWSLERLTNFIAKKAMDKSKKVRMSKWHVIPLDENQLMYAAID
VYIGQVIYRELERREKVKIKNEEEFKEKNGDAAFKAMKALGETFLTKINE
VTLASFLDH
BO35073.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:47:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| WRNexo-PC | 353 | CG7670-PC | 1..353 | 1..353 | 1843 | 100 | Plus |
| WRNexo-PB | 354 | CG7670-PB | 1..354 | 1..353 | 1831 | 99.7 | Plus |
| WRNexo-PA | 353 | CG7670-PA | 1..353 | 1..353 | 1814 | 99.4 | Plus |
