BO35075.complete Sequence
1318 bp assembled on 2013-12-04
GenBank Submission: KX797713
> BO35075.complete
GAAGTTATCAGTCGACATGTCCACCACCACAACAGCATCCAAGGGCTATA
AGCTCGGCAAGGTCATCATCGAGGGCAAAACCAAACAGGTGTACGATCTG
CCAGAGCAGCCAGGACTTTGCCTGCTCCTCAGCAAGGATCGCATCACCGC
CGGCGATGGTGTCAAAGCACATGATCTGGCCGGCAAGGCGGAGATCTCCA
ATACCACCAACGGTCAGGTCTTCCGGCTGCTCAACGAGGCAGGCATTCGC
ACCGCCTATGTGAAGCAGTGCGGCGCCAAGGCCTTCATCGCCCGCAAGTG
CCAGATGATACCCATTGAGTGGGTGACCCGTCGCCTGGCCACCGGTTCGT
TCCTCAAGCGCAATGTCGGCGTGCCCGAGGGCTACAGGTTCTCGCCGCCC
AAACAGGAGACGTTCTTCAAGGATGATGCCAACCACGATCCCCAGTGGAG
CGAGGAGCAAATTGTCTCCGCCAAGTTCGAGCTAAATGGCCTGGTGATCG
GCCAAGATGAGGTGGACATTATGCGTAGAACCACACTGCTGGTCTTCGAG
ATTCTCGAGAGGGCATGGCAGACCAAGAATTGCGCCCTGATCGACATGAA
AGTGGAGTTCGGTATCTGCGACGATGGCAACATAGTTCTGGCCGATATCA
TTGATTCCGATTCGTGGCGCTTGTGGCCAGCGGGTGACAAGCGTTTGATG
GTCGACAAGCAGGTGTATCGCAATCTGGCATCGGTGACGGCCAGCGATTT
GGATACCGTAAAGAGGAACTTCATTTGGGTGGCCGAACAACTGGCTGATA
TTGTGCCCAAGAAGGATCACCTGGTTGTCATTCTGATGGGCAGTGCTTCC
GATATATCGCACAGCGAGAAGATAGCCACCAGCTGTCGATCCCTCGGCCT
TAATGTGGAACTTCGCGTGAGTTCGGCCCACAAGGGACCGGAGGAAACGT
TGCGCATTGTCCGCGAATATGAATCGGTGATGAGCAACTTGATCTTTGTG
GCCGTCGCCGGGCGATCCAATGGACTGGGTCCAGTCGTTTCCGGCAGCAC
CAACTATCCGGTAATCAATTGTCCGCCCGTCAAATCGGACAACATGCAGG
TGGACGTGTGGTCCAGCTTGAATCTGCCATCGGGGCTGGGCTGTGCCACA
GTTCTCTATCCAGAGGCAGCTGCTCTGCATGCGGCCACCATTCTGGGGCT
GGGCAACTTCATGGTCTGGTCGAAATTGCGTGTCAAGGCGCTCAACAACT
TTATCACTCTCAAGAAGGCCGACAAGGAGTTGCGCGGCGTGCGAAATGCT
GCAAGCTTTCTAGACCAT
BO35075.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:37:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ade5-RB | 1287 | CG3989-PB | 1..1284 | 17..1300 | 6420 | 100 | Plus |
| ade5-RA | 1290 | CG3989-PA | 1..1287 | 17..1300 | 6355 | 99.8 | Plus |
| CG40801-RB | 429 | CG40801-PB | 59..403 | 42..390 | 1500 | 96 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:37:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ade5-RB | 2547 | CG3989-RB | 241..1528 | 13..1300 | 6425 | 99.9 | Plus |
| ade5-RA | 1826 | CG3989-RA | 241..1531 | 13..1300 | 6360 | 99.7 | Plus |
| CG40801-RB | 429 | CG40801-RB | 59..403 | 42..390 | 1500 | 96 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:37:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12758055..12758855 | 1300..500 | 4005 | 100 | Minus |
| X | 23542271 | X | 12759711..12759912 | 243..42 | 1010 | 100 | Minus |
| Y | 3667352 | Y | 3059275..3059476 | 243..42 | 920 | 97 | Minus |
| Y | 3667352 | Y | 3231314..3231515 | 42..243 | 920 | 97 | Plus |
| Y | 3667352 | Y | 3267332..3267533 | 243..42 | 905 | 96.5 | Minus |
| U | 3151297 | U | 2460019..2460220 | 42..243 | 905 | 96.5 | Plus |
| X | 23542271 | X | 12759460..12759610 | 390..240 | 755 | 100 | Minus |
| 2L | 23513712 | 2L | 12453715..12454367 | 56..708 | 700 | 73.8 | Plus |
| Ymm | 880023 | Ymm | 562059..562204 | 42..187 | 640 | 95.9 | Plus |
| Y | 3667352 | Y | 3267089..3267236 | 390..239 | 620 | 95.4 | Minus |
| U | 3151297 | U | 2460316..2460463 | 239..390 | 620 | 95.4 | Plus |
| X | 23542271 | X | 12758922..12759038 | 501..385 | 585 | 100 | Minus |
| Y | 3667352 | Y | 3059062..3059204 | 390..244 | 580 | 94.6 | Minus |
| Y | 3667352 | Y | 3091728..3091869 | 183..42 | 560 | 93 | Minus |
| Y | 3667352 | Y | 3205825..3205966 | 42..183 | 560 | 93 | Plus |
| Ymm | 880023 | Ymm | 631403..631544 | 183..42 | 560 | 93 | Minus |
| Y | 3667352 | Y | 3231586..3231711 | 244..373 | 510 | 94.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:37:54 has no hits.
BO35075.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-12-04 09:59:26 Download gff for
BO35075.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ade5-RB | 245..1528 | 17..1302 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:18:51 Download gff for
BO35075.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ade5-RB | 245..1528 | 17..1302 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:18:51 Download gff for
BO35075.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12758053..12758854 | 501..1302 | 99 | <- | Minus |
| X | 12758923..12759035 | 388..500 | 100 | <- | Minus |
| X | 12759463..12759607 | 243..387 | 100 | <- | Minus |
| X | 12759712..12759912 | 42..242 | 100 | <- | Minus |
| X | 12760349..12760373 | 17..41 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-12-04 09:59:26 Download gff for
BO35075.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12652086..12652887 | 501..1302 | 99 | <- | Minus |
| arm_X | 12652956..12653068 | 388..500 | 100 | <- | Minus |
| arm_X | 12653496..12653640 | 243..387 | 100 | <- | Minus |
| arm_X | 12653745..12653945 | 42..242 | 100 | <- | Minus |
| arm_X | 12654382..12654406 | 17..41 | 100 | | Minus |
BO35075.pep Sequence
Translation from 16 to 1318
> BO35075.pep
MSTTTTASKGYKLGKVIIEGKTKQVYDLPEQPGLCLLLSKDRITAGDGVK
AHDLAGKAEISNTTNGQVFRLLNEAGIRTAYVKQCGAKAFIARKCQMIPI
EWVTRRLATGSFLKRNVGVPEGYRFSPPKQETFFKDDANHDPQWSEEQIV
SAKFELNGLVIGQDEVDIMRRTTLLVFEILERAWQTKNCALIDMKVEFGI
CDDGNIVLADIIDSDSWRLWPAGDKRLMVDKQVYRNLASVTASDLDTVKR
NFIWVAEQLADIVPKKDHLVVILMGSASDISHSEKIATSCRSLGLNVELR
VSSAHKGPEETLRIVREYESVMSNLIFVAVAGRSNGLGPVVSGSTNYPVI
NCPPVKSDNMQVDVWSSLNLPSGLGCATVLYPEAAALHAATILGLGNFMV
WSKLRVKALNNFITLKKADKELRGVRNAASFLDH
BO35075.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:47:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ade5-PB | 428 | CG3989-PB | 1..428 | 1..428 | 2203 | 100 | Plus |
| ade5-PA | 429 | CG3989-PA | 1..429 | 1..428 | 2187 | 99.5 | Plus |
| CG40801-PB | 142 | CG40801-PB | 20..122 | 9..111 | 517 | 97.1 | Plus |
