BO35081.complete Sequence
1708 bp assembled on 2014-03-03
GenBank Submission: KX796907
> BO35081.complete
GAAGTTATCAGTCGACATGCACGCAGGTGGAAAATATTGCGGTCCTCGGC
ATTGTAGTTTCTATATCATAGCATTCCTTATCTGTCAGTTGTTTTTCTTA
GTCATATTTATACGGAATGATGATGCTTCAAGCGCCAATGAACTGTTATC
TTTCATGAATGAGAGTGAGGAGAGTGACCACCTGGATTGGCGCGTATTCA
TATCCCATACACCAGAAACATCGGAGGATTTTTACCAATACAATATTCAT
TTGAGTAATGCTTTGGGTCTTATACGTAAGTTGCCCGTAACAAGGCATCA
TAGTTGTACTACACGTAATTCTATACTTCCTGCCCCTTTGGAGGCCAATG
TGAGTGTGGTGATTAGTTTCCACAATGAAGCGCGTTCTATGCTGCTGCGT
ACCATTGTGTCCCTGCTGAGTCGCTCGCCGGAGGACTATCTGCATGAGCT
AATCCTTGTGGACGATGGCAGTCAGCGAGATGTGACCCTGCTGGATGACC
TCAAGCGATGGATGGGCGGGGTGTTCGGGTCGAGATATCGCCTTGGGCTC
ACCTTCCTCAGGAACCAGGAGCGCATGGGCCTGATTTGGTCGCGCAACAG
GGGCGCCTCCTTGGCCAGTGGACGTTATGTGCTCTTTCTGGACAGCCACT
GCGAGGTGAACGAGGGCTGGCTGGAGCCACTGCTGGAACGGCTTGCACTC
AATACCAATCTGGCAGTTAGTCCACTACTTGATCCCATTGACCCGACCAC
CCTGAGCTACCGGAAGGGCAACGAGTTGCTGAAGGGCGGATTTGACTGGT
CCCTACACTTTCACTGGCTGAAACGACAGCTGACCAACCAGGAGAGCCTG
GAGATGCCCTACCAGAGTCCTGCCTTCGCTGGCGGCGTACTGATGATGTC
ACGCGAATGGTTCCTTAAGCTGGGCAGCTTCAACCCGTATCTGAAGATCT
GGGGCGGTGAGTCCATCGAGCTGGCCATTAAATTGTGGCTTTGCGGTGGA
CAAATTGAGATCGTGCCCTGCAGTCGAATCGGACACATCTTTCGCCGCCG
CCACGCCTTCGACTTTCCACCGCAATCCGACCGTCAGTTGAGCCCGGCCC
AGGAAACCTATCTGCACAACTCAAAAATCATAGCCGAGTCCTGGCTGGAC
GAGTATAAAAATATGTTCTACGCACTGAGACCGGCGGCCAGGCGAATTCC
ACTGGATCACACCTATGATGAGCTGCAACGGATGCGGAAGGAACGGCGGT
GCCATCCCTTCGAATGGTATCTACGGCATGTCAGCCCCGAACTAAGGATG
CACTTCGATGAGCTGTCGGCTACGGGAACGTTGCGGAATGAGGATCGGTG
TGTGCACGCTAGACAAAAGGACTCCCAGCCAATCCTGGCGAGCTGCTACC
TCAGCGACATCACCCAGTGGAGCATGCTGCGCCAGAGTGGACAGTTGAGC
ACCCATCGGGAGCTTTGCCTGGCTGTGGGGTTCGGGATGCGAATAGCATT
GGAGCCGTGCGGGCGGAATGAGACCGTGAGGAGATCGCAGCGATGGGTGC
GCCTGGGCACCCATCTCCTGCACGCCGAATCGCACCTGTGCCTAGATAAT
CCGCTCAAGGACCGATTGGAGATGAGCACTTGCCGTTCGCATGCCGTATC
GCAGTCGTTTCAATTTGCATTGGAAATGGAGGGGCAGACAGCAAGCTTTC
TAGACCAT
BO35081.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:05:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10000-RA | 1677 | CG10000-PA | 1..1674 | 17..1690 | 8370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:05:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10000-RA | 2597 | CG10000-RA | 88..1766 | 12..1690 | 8380 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:05:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28750466..28750930 | 946..482 | 2325 | 100 | Minus |
| 3R | 32079331 | 3R | 28749215..28749610 | 1690..1295 | 1980 | 100 | Minus |
| 3R | 32079331 | 3R | 28750985..28751166 | 482..301 | 910 | 100 | Minus |
| 3R | 32079331 | 3R | 28749851..28750031 | 1297..1117 | 905 | 100 | Minus |
| 3R | 32079331 | 3R | 28750171..28750342 | 1116..945 | 860 | 100 | Minus |
| 3R | 32079331 | 3R | 28751225..28751385 | 303..143 | 805 | 100 | Minus |
| 3R | 32079331 | 3R | 28751444..28751574 | 142..12 | 640 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 15:05:08 has no hits.
BO35081.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-03-03 17:26:10 Download gff for
BO35081.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10000-RA | 93..1766 | 17..1692 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:31:03 Download gff for
BO35081.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10000-RA | 93..1766 | 17..1692 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:31:03 Download gff for
BO35081.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28751225..28751385 | 143..303 | 100 | <- | Minus |
| 3R | 28751444..28751569 | 17..142 | 100 | | Minus |
| 3R | 28750985..28751163 | 304..482 | 100 | <- | Minus |
| 3R | 28749213..28749608 | 1297..1692 | 99 | <- | Minus |
| 3R | 28749852..28750031 | 1117..1296 | 100 | <- | Minus |
| 3R | 28750171..28750340 | 947..1116 | 100 | <- | Minus |
| 3R | 28750466..28750929 | 483..946 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-03-03 17:26:10 Download gff for
BO35081.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24576947..24577107 | 143..303 | 100 | <- | Minus |
| arm_3R | 24577166..24577291 | 17..142 | 100 | | Minus |
| arm_3R | 24576707..24576885 | 304..482 | 100 | <- | Minus |
| arm_3R | 24574935..24575330 | 1297..1692 | 99 | <- | Minus |
| arm_3R | 24575574..24575753 | 1117..1296 | 100 | <- | Minus |
| arm_3R | 24575893..24576062 | 947..1116 | 100 | <- | Minus |
| arm_3R | 24576188..24576651 | 483..946 | 100 | <- | Minus |
BO35081.pep Sequence
Translation from 16 to 1708
> BO35081.pep
MHAGGKYCGPRHCSFYIIAFLICQLFFLVIFIRNDDASSANELLSFMNES
EESDHLDWRVFISHTPETSEDFYQYNIHLSNALGLIRKLPVTRHHSCTTR
NSILPAPLEANVSVVISFHNEARSMLLRTIVSLLSRSPEDYLHELILVDD
GSQRDVTLLDDLKRWMGGVFGSRYRLGLTFLRNQERMGLIWSRNRGASLA
SGRYVLFLDSHCEVNEGWLEPLLERLALNTNLAVSPLLDPIDPTTLSYRK
GNELLKGGFDWSLHFHWLKRQLTNQESLEMPYQSPAFAGGVLMMSREWFL
KLGSFNPYLKIWGGESIELAIKLWLCGGQIEIVPCSRIGHIFRRRHAFDF
PPQSDRQLSPAQETYLHNSKIIAESWLDEYKNMFYALRPAARRIPLDHTY
DELQRMRKERRCHPFEWYLRHVSPELRMHFDELSATGTLRNEDRCVHARQ
KDSQPILASCYLSDITQWSMLRQSGQLSTHRELCLAVGFGMRIALEPCGR
NETVRRSQRWVRLGTHLLHAESHLCLDNPLKDRLEMSTCRSHAVSQSFQF
ALEMEGQTASFLDH
BO35081.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:03:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10000-PA | 558 | CG10000-PA | 1..558 | 1..558 | 2980 | 100 | Plus |
| pgant2-PB | 633 | CG3254-PB | 169..620 | 74..545 | 680 | 34 | Plus |
| pgant2-PA | 633 | CG3254-PA | 169..620 | 74..545 | 680 | 34 | Plus |
| pgant5-PB | 630 | CG31651-PB | 154..509 | 74..443 | 648 | 36.4 | Plus |
| pgant5-PA | 630 | CG31651-PA | 154..509 | 74..443 | 646 | 36.1 | Plus |
