BO35084.complete Sequence
1519 bp assembled on 2014-03-03
GenBank Submission: KX799474
> BO35084.complete
GAAGTTATCAGTCGACATGAGCACATTGGCACTGGTGGCTTTCGTCCTTT
GGGCAGCTTTTCTACGCTACCTACCCAAGATTCTGAATTTTCTGAGACTT
CAGAGATTTGCGAAAACTCTGCCGGGTCCCACGATTGGCGAACTGATTGC
CAATGTTAAGAAAGGCGAGATCCTTAACTGGCTAAAGGAACTGAGGGAGA
AGCATGGTCCGGTATTCCGCATCTGGTTTGGCAAGGATCTGATGGTTATG
TTCACGGATCCGGAGGACATTAAGCAGCTGCTCGGCAACAATCAGTTGCT
GACCAAGTCGCGAAACTACGAGCTGCTCGAGCCCTGGCTGGGCAAGGGTC
TGCTCACGAATGGCGGCGAGTCCTGGCATCGTCGCCGAAAGCTCCTCACT
CCGGGCTTCCATTTCCGCATCCTTAGCGAGTTCAAGGAGCCAATGGAGGA
GAATTGCCGCATCCTGGTGCGTCGTCTGAGGACCAAGGCCAATGGCGAAT
CCTTCGACATCTATCCTTATATTACCCTATTCGCCCTGGACGCCATCTGC
GAAACGGCCATGGGCATCAAGAAGCACGCCCAGCTGCAGAGCGACTCCGA
ATATGTGCAGGCTGTTCAATCTATTTGCCGTGTGATGCACAAGCAGAGCT
TCTCCTTCTGGCAGCGACTCAACGTGTTCTTTAAGCACACAAAGCCCGGA
AAGGAACGGGAGGCAGCTCTAAAGGTGCTCCACGACGAGACCAATCGGGT
GATCCGGCTGCGTCGTGAGCAGCTCATCCAGGAGCGCAACGAATGGAAAC
CAGAAGCGGAGCAGGACGATGTGGGCGCCAAGCGGCGACTGGCCTTCCTC
GACATGCTGCTGCTCACCCAAATGGAGGGCGGTGCGGAGCTGAGCGATAC
CGATATTCGCGAAGAAGTGGACACCTTCATGTTCGAGGGTCACGACACCA
CCAGTTCGGCCATCGCTTTTGCACTGAGTTTGCTGTCTAAAAATCCGGAT
GTACAGCAGCGCGCCTTCGAGGAGGCCAGCGAACTGGAGGGCAGGGAGAA
GGAATCGATGCCGTATCTGGAGGCGGTGATCAAGGAGACGCTGCGCATCT
ACCCCTCGGTGCCGTTCTTCTCGAGGAAAGTTCTCGAGGATCTGGAGGTG
GGCAAATTGACGGTGCCCAAGGGCGCCTCGATAAGCTGCCTCATCTACAT
GCTCCATCGTGATCCCAAGAACTTCCCCGATCCGGAGCGATTCGATCCCG
ATCGCTTCCTGGTCAACGAGAAGCAAATGCATCCGTTTGCCTTCGCCGCT
TTCAGTGCGGGACCCAGAAATTGCATAGGTCAAAAGTTTGCCATGTTGGA
GTTGAAGACGTCGCTAGCGATGCTCCTGAGAAGCTATCGCTTCCTGCCCG
ACAAGGATCATCAGCCAAAGCCGTTGGCCGAATTGGTGACTAAAAGTGGA
AATGGCATTCGACTTCGGATCTTGCCACGGGATGAGAACGGAACGACAGC
AGCAAGCTTTCTAGACCAT
BO35084.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:00:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp4s3-RA | 1488 | CG9081-PA | 1..1485 | 17..1501 | 7425 | 100 | Plus |
| Cyp4d1-RA | 1539 | CG3656-PA | 916..972 | 905..961 | 225 | 93 | Plus |
| Cyp4d1-RB | 1512 | CG3656-PB | 889..945 | 905..961 | 225 | 93 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:00:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp4s3-RA | 2288 | CG9081-RA | 167..1655 | 13..1501 | 7430 | 99.9 | Plus |
| Cyp4d1-RA | 1685 | CG3656-RA | 992..1048 | 905..961 | 225 | 93 | Plus |
| Cyp4d1-RB | 1644 | CG3656-RB | 951..1007 | 905..961 | 225 | 93 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:00:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15114696..15115404 | 1330..622 | 3545 | 100 | Minus |
| X | 23542271 | X | 15115472..15115926 | 621..167 | 2275 | 100 | Minus |
| X | 23542271 | X | 15113935..15114109 | 1501..1327 | 875 | 100 | Minus |
| X | 23542271 | X | 15116222..15116376 | 167..13 | 760 | 99.4 | Minus |
| X | 23542271 | X | 2159842..2159898 | 961..905 | 225 | 93 | Minus |
Blast to na_te.dros performed on 2014-11-28 15:00:45 has no hits.
BO35084.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-03-03 17:24:33 Download gff for
BO35084.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4s3-RA | 171..1655 | 17..1503 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:29:14 Download gff for
BO35084.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4s3-RA | 171..1655 | 17..1503 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:29:14 Download gff for
BO35084.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15113933..15114107 | 1329..1503 | 98 | <- | Minus |
| X | 15114698..15115404 | 622..1328 | 100 | <- | Minus |
| X | 15115472..15115925 | 168..621 | 100 | <- | Minus |
| X | 15116222..15116372 | 17..167 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-03-03 17:24:33 Download gff for
BO35084.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15007966..15008140 | 1329..1503 | 98 | <- | Minus |
| arm_X | 15008731..15009437 | 622..1328 | 100 | <- | Minus |
| arm_X | 15009505..15009958 | 168..621 | 100 | <- | Minus |
| arm_X | 15010255..15010405 | 17..167 | 100 | | Minus |
BO35084.pep Sequence
Translation from 16 to 1519
> BO35084.pep
MSTLALVAFVLWAAFLRYLPKILNFLRLQRFAKTLPGPTIGELIANVKKG
EILNWLKELREKHGPVFRIWFGKDLMVMFTDPEDIKQLLGNNQLLTKSRN
YELLEPWLGKGLLTNGGESWHRRRKLLTPGFHFRILSEFKEPMEENCRIL
VRRLRTKANGESFDIYPYITLFALDAICETAMGIKKHAQLQSDSEYVQAV
QSICRVMHKQSFSFWQRLNVFFKHTKPGKEREAALKVLHDETNRVIRLRR
EQLIQERNEWKPEAEQDDVGAKRRLAFLDMLLLTQMEGGAELSDTDIREE
VDTFMFEGHDTTSSAIAFALSLLSKNPDVQQRAFEEASELEGREKESMPY
LEAVIKETLRIYPSVPFFSRKVLEDLEVGKLTVPKGASISCLIYMLHRDP
KNFPDPERFDPDRFLVNEKQMHPFAFAAFSAGPRNCIGQKFAMLELKTSL
AMLLRSYRFLPDKDHQPKPLAELVTKSGNGIRLRILPRDENGTTAASFLD
H
BO35084.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:00:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp4s3-PA | 495 | CG9081-PA | 1..495 | 1..495 | 2570 | 100 | Plus |
| Cyp4d2-PB | 501 | CG3466-PB | 2..500 | 4..488 | 994 | 42.1 | Plus |
| Cyp4d2-PA | 501 | CG3466-PA | 2..500 | 4..488 | 994 | 42.1 | Plus |
| Cyp4c3-PA | 535 | CG1438-PA | 50..535 | 27..489 | 950 | 42.2 | Plus |
| Cyp4d1-PB | 503 | CG3656-PB | 16..501 | 23..488 | 928 | 41.5 | Plus |
