BO35106.complete Sequence
1051 bp assembled on 2013-12-04
GenBank Submission: KX794012
> BO35106.complete
GAAGTTATCAGTCGACATGCGGCCTTTTGGCAACGACATAACAAACATCC
CGAACGGTGGTAATAATGGTGGTAATAATGGTGGTAATAATGGCAACAAC
GATCCCAACGACGGCAACGACAACCGGAACACGAACATATCCAGTGAGGA
TCCCAGCGAGGAGTCCGGACTATCGGACGATCCGAGTATTCCGCCGCATA
TAGCGAGAATCGGCGGAATCGTTACCTGCCCCCCGATCGCTGGACAAGGA
GTTATCCGGGTGGTTCAGCGTTGCGAAGACGCCAAGGAGAACCACAAACT
GGATCTTTCAAGTTGTGAACTGATGCAAATACCAGATGCGGTATATCATC
TTATGCGAAACACAGAGTTGATCACCTGCAATCTCAGTGGCAATGTGCTC
AAAAGCGTTTCGCCCAAGTTTTCGCAAAAGTTTAGTACCATCACAGATCT
TAATCTGTCACACAACAAACTGTCGAGGCTGCCAGAAGAATTCGCCAGCT
TGTCTGCGCTAACCAAGCTGAATATCTCGAACAATTCATTTATCGTTTTG
CCACAAGTAGTCTTTAAGCTTCAGAGTCTTGCCAGTCTGGATGCCCAGAA
CAATGCCATTTTGGAAATTGATACCGATGAGGCAATTACCAGTGACAATT
TGGCCCTCGTTGATCTTCGGAATAATCCGCTGAGCAGAAACTGCCGACGA
AAGCTGCAGAGCTTCAAGACCCCCTTCCACCTTGAGATCTCCAAGGATGT
CGAAGACGACTGGTTTTTGACAAAAAGCCGAGAAATTACCAGATGGGACT
CTCATTTGGGGTTTGGGAATTTCTCAAATTACGATAGCACGAGAAAGAGA
GGGACGGCCAATAGTTACCCAGTGATGAGCCATGTTAGCATTAGACGCCA
AATTACAGCTAACAAAAGTTGGTTCATGACTTTCCGTAAAAGAACATCCG
ATTTTTTTGGATTGCCAAGCCTCTTTCAGCTCTTGCTGAAATTTCAAAAC
GTATTGGGCTTAAAAATGGGAATTCTAGGTTTTGCAAGCTTTCTAGACCA
T
BO35106.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:38:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sclp-RC | 1020 | CG2471-PC | 1..1017 | 17..1033 | 5085 | 100 | Plus |
| Sclp-RA | 750 | CG2471-PA | 1..748 | 17..764 | 3740 | 100 | Plus |
| Sclp-RB | 528 | CG2471-PB | 64..526 | 302..764 | 2315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:38:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sclp-RC | 1766 | CG74-RC | 220..1236 | 17..1033 | 5085 | 100 | Plus |
| Sclp-RA | 1102 | CG2471-RA | 220..967 | 17..764 | 3740 | 100 | Plus |
| Sclp-RB | 770 | CG2471-RB | 173..635 | 302..764 | 2315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:38:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11924158..11924443 | 302..17 | 1430 | 100 | Minus |
| X | 23542271 | X | 11920734..11921005 | 1033..762 | 1360 | 100 | Minus |
| X | 23542271 | X | 11921998..11922168 | 614..444 | 855 | 100 | Minus |
| X | 23542271 | X | 11921782..11921932 | 764..614 | 755 | 100 | Minus |
| X | 23542271 | X | 11922230..11922374 | 446..302 | 725 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:38:41 has no hits.
BO35106.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-12-04 09:59:46 Download gff for
BO35106.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sclp-RC | 220..1236 | 17..1035 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:19:15 Download gff for
BO35106.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sclp-RC | 220..1236 | 17..1035 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:19:15 Download gff for
BO35106.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11920732..11921004 | 763..1035 | 99 | <- | Minus |
| X | 11921784..11921931 | 615..762 | 100 | <- | Minus |
| X | 11921998..11922165 | 447..614 | 100 | <- | Minus |
| X | 11922230..11922373 | 303..446 | 100 | <- | Minus |
| X | 11924158..11924443 | 17..302 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-12-04 09:59:46 Download gff for
BO35106.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11814765..11815037 | 763..1035 | 99 | <- | Minus |
| arm_X | 11815817..11815964 | 615..762 | 100 | <- | Minus |
| arm_X | 11816031..11816198 | 447..614 | 100 | <- | Minus |
| arm_X | 11816263..11816406 | 303..446 | 100 | <- | Minus |
| arm_X | 11818191..11818476 | 17..302 | 100 | | Minus |
BO35106.pep Sequence
Translation from 16 to 1051
> BO35106.pep
MRPFGNDITNIPNGGNNGGNNGGNNGNNDPNDGNDNRNTNISSEDPSEES
GLSDDPSIPPHIARIGGIVTCPPIAGQGVIRVVQRCEDAKENHKLDLSSC
ELMQIPDAVYHLMRNTELITCNLSGNVLKSVSPKFSQKFSTITDLNLSHN
KLSRLPEEFASLSALTKLNISNNSFIVLPQVVFKLQSLASLDAQNNAILE
IDTDEAITSDNLALVDLRNNPLSRNCRRKLQSFKTPFHLEISKDVEDDWF
LTKSREITRWDSHLGFGNFSNYDSTRKRGTANSYPVMSHVSIRRQITANK
SWFMTFRKRTSDFFGLPSLFQLLLKFQNVLGLKMGILGFASFLDH
BO35106.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:48:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sclp-PC | 339 | CG2471-PC | 1..339 | 1..339 | 1771 | 100 | Plus |
| Sclp-PA | 249 | CG2471-PA | 1..249 | 1..249 | 1299 | 100 | Plus |
| Sclp-PB | 175 | CG2471-PB | 5..175 | 79..249 | 828 | 95.3 | Plus |
| f-cup-PE | 620 | CG9611-PE | 446..572 | 93..222 | 192 | 38.2 | Plus |
| f-cup-PB | 650 | CG9611-PB | 476..602 | 93..222 | 192 | 38.2 | Plus |
