BO35108.complete Sequence
2815 bp assembled on 2014-03-03
GenBank Submission: KX794057
> BO35108.complete
GAAGTTATCAGTCGACATGGAACAGCACAAAAGTTGGCTGGTCTATACCA
TCGGCATGCTCACGGCGTTCCTTTGCGGCGCCGTGCTCTTTCTGATTGGC
TTCTTTCCGGCCTCCTACTCGGTGGCGGAGAAGGAAAGCACCGTGCCAGA
GGGCCGGCCCACCGCTCTGCTTGGCATGGAACTGACGCCGCCGCCACCTG
CCTATGACTCCTTTGTGCTGTTACTGGTCGACGCGTTGCGCGATGATTTT
CCCGATGCCACGTCTATGCCGGTGGCTTATTCTAGGGCCTGCGAGAAGCT
TAAGCTCCATGTGGACATACCGACGGTGACTATGCCACGCTTGAAGAGCA
TCACCACCGGCACCCTTTCGAACTTTATCGACATTGCGCTAAACGTGGGT
CATACGGAGCAGATGCAGGACTCGTTCTTGCACCGGCTAAAACAGCAGAA
TCGAGTTGTTTCCTTTGCCGGCGACCACACCTGGGTGAAGCTCTTTCCCA
GCGAGTTTACACGGCAGGTCGAGAACCATGATTCCTTTTATGTTAACGAC
TTCTACGAGGGCGATAGAAATGTGACCAAAACGCTGGAGACTGAGTTGGA
GCGGAGTGACTGGTCTTTGCTGATTTTACACTATCTGGGCCTCGATCACA
TTGGTCATGTCGAGGGCAATGCCAGCCCTAGGGTGCCCCTAAAGCTAAAG
GAAATGGATGAGGTGGTGAAAAAAATATTGGATCATAAGAGTTTTCCCAA
CGTTCTGCTTATGCTGACTGGAGATCATGGCATGGCTGATGGCGGAGGAC
ATGGCGGCAATACGCCAGCCGAAACTCTGGTACCTTTATATTTGTATTAC
AACAACTGCAGCAAAACACCATCCGCCTCAAAACGGTACAACCAAATCGA
TTTGGCGCCCACCCTTTCAGTGCTTCTGTCTGTTGAAATACCCACGCTCT
CCATTGGCTGCCTAATACCGGAGATGCTGCAATCGCTGTCTTTGGAGCAC
CAGTTGTATGCTTACTTCTACAACGCCCACCACTTGCTCAACAAGGCGCG
AGTGAAGTTCGGCCACGAAATAGTCCATCGGAGTGATTACTACACCTGGT
ATCAGAATGCCACCCTGTTACACAAGAAGCTGCTGCGCCCTTTAAGAGAA
GGCGATGGAGGTGGAGCTAGTCAGGTTTACTACCAGAACGCCAAGCTTAA
TTATATGCGCGTGGCTCGCGAGATTTCTGATCTGCTCTCCGAATCCCTGG
TGAAGTTCGACTATGGATTTATTGCCGTTGGATTAGCTTTGACCACATCG
ACATCCCTTCATATTGTGATCAGCGTCTTGTACTTGGATCTCACCGAACA
GCTTCAGCTGGACGGATTAAAAGTGGGGCAACTGTGGCTCTCTGTGATTG
CTGCTGTCGTCTTAAATTATACTAGTCATGCATTGGACATCATCATGACC
AGTTCAACGCTTTACAGCATTCTCCTATTGGTACCCATCTCGATCGCTGT
TTACCTTACAATCGACGTGGCGCAGGCGCTGCTCAAGATTGCATTGCCTC
CGCTATACACGCGTCGCCTGAAGATTTCCATTCCATTGCCGCTACCTCTG
CTAGCTTGTTATGCTATACGCACTTTAACTCTTGGTTCCTCCTCGTTTAT
TGAATTCGAGTATAATACATGGTATTACCTGGGCAATACCCTCATCCTAT
TGACGGCATTCCGAACGCTGCGATGGCGCATCACCAAAACCAACGTGGAA
CTAAATGGCCGTCATCTGTACACGATTGCATCGACCTGTCTGTGGCAAAT
GCGTAAAGTGCTTGTGGTGCTTATGCTGCTCACATTGATGCGCTACATCC
ACAGGCTGCAGGCTATCCGGAGCACCGTCGTCATATTTTCGATGCTGTTG
CTCTGGGCACGCCTCCATCGTCACAGCCAGTTGCCGCAGTCGTTGGCCAG
TGGAGCAGCTTTATTCATGGTTTACTGCTTCCGAGGGCTAAACGGCCAGG
TGCTTTTCTTCGACGTGCCTTCGCACATGGCTGCAAAACTTATGGTGCCG
ACGCTGGTGATCTTCTGGTGCTGTTTGGCCCTTGTTTTGATGCTGGGCTA
TCGGGCGGCACTGCCTCAAGCGCACAGCTTTGGGAAGGTGCCGCCCACAG
GTGCATTATTGCAGTTGCTGCAGACGAACCTTACCAGCTCGCTGCTGTTG
GCTGCACTTTTGCAACGGGTCCACAACATCTTACTACTACCCGTACTTCT
CGTGGCCCTGCAGCAAACGTACAAGCTGTGCGATGTCTACGGCACCAGTG
CCCGAAAGTTCTCCGTGCGATTGGTGCATGTGTACAAGATCATCATGACC
ATATTCCTGGCCAGGATGTTCTTCTTCTACCAGGGTAACTCGAACAGCCT
GTCCACCATTGACCTAACGCCTGGTTATATCGGACAGACAAACTACAACC
CGTCGATCGTTGCCATCTTTGTCACCCTCAACACGTACAGTGCGGATATT
CATGCATTCCTCTATTTAGTTGTCCACACCCTGCGCTCGGATCTGCGCAG
TGTGGGTATCATGCAGCTACATCCTCCGTACTCGATAGCCGCGGATTCGC
TGATAGCTCCGCTCTACGCCGCGCTAATCATGTTGCCGGCGGCCTTCTAC
CTCTGCCTCTTGGTTGGCTTCCGCTACCACCTCTTTATCTACTCCGTGTT
TTCCCCAAAAGTACTTTACGACTGTTACACTGTGCTGGTGTTCTATTTGG
TATTTTTAGTAACGAGTTTGTACTTTAAATTGTTTAAACATGACGCTGCA
AGCTTTCTAGACCAT
BO35108.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:00:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2144-RA | 2784 | CG2144-PA | 1..2781 | 17..2797 | 13905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:00:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2144-RA | 2909 | CG2144-RA | 95..2875 | 17..2797 | 13905 | 100 | Plus |
| Orc1-RA | 3152 | CG10667-RA | 3082..3152 | 2797..2727 | 355 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:00:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7521742..7522507 | 2032..2797 | 3830 | 100 | Plus |
| 2R | 25286936 | 2R | 7520950..7521681 | 1300..2031 | 3660 | 100 | Plus |
| 2R | 25286936 | 2R | 7519601..7520159 | 181..739 | 2795 | 100 | Plus |
| 2R | 25286936 | 2R | 7520683..7520898 | 1085..1300 | 1080 | 100 | Plus |
| 2R | 25286936 | 2R | 7520411..7520625 | 871..1085 | 1075 | 100 | Plus |
| 2R | 25286936 | 2R | 7519374..7519537 | 17..180 | 820 | 100 | Plus |
| 2R | 25286936 | 2R | 7520219..7520364 | 738..883 | 670 | 97.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 15:00:53 has no hits.
BO35108.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-03-03 17:24:36 Download gff for
BO35108.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2144-RA | 95..2875 | 17..2799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:29:18 Download gff for
BO35108.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2144-RA | 95..2875 | 17..2799 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:29:18 Download gff for
BO35108.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7520684..7520898 | 1086..1300 | 100 | -> | Plus |
| 2R | 7519374..7519537 | 17..180 | 100 | -> | Plus |
| 2R | 7519601..7520159 | 181..739 | 100 | -> | Plus |
| 2R | 7520221..7520351 | 740..870 | 100 | -> | Plus |
| 2R | 7520411..7520625 | 871..1085 | 100 | -> | Plus |
| 2R | 7520951..7521681 | 1301..2031 | 100 | -> | Plus |
| 2R | 7521742..7522507 | 2032..2799 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-03-03 17:24:36 Download gff for
BO35108.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3406879..3407042 | 17..180 | 100 | -> | Plus |
| arm_2R | 3407106..3407664 | 181..739 | 100 | -> | Plus |
| arm_2R | 3407726..3407856 | 740..870 | 100 | -> | Plus |
| arm_2R | 3407916..3408130 | 871..1085 | 100 | -> | Plus |
| arm_2R | 3408189..3408403 | 1086..1300 | 100 | -> | Plus |
| arm_2R | 3408456..3409186 | 1301..2031 | 100 | -> | Plus |
| arm_2R | 3409247..3410012 | 2032..2799 | 99 | | Plus |
BO35108.pep Sequence
Translation from 16 to 2815
> BO35108.pep
MEQHKSWLVYTIGMLTAFLCGAVLFLIGFFPASYSVAEKESTVPEGRPTA
LLGMELTPPPPAYDSFVLLLVDALRDDFPDATSMPVAYSRACEKLKLHVD
IPTVTMPRLKSITTGTLSNFIDIALNVGHTEQMQDSFLHRLKQQNRVVSF
AGDHTWVKLFPSEFTRQVENHDSFYVNDFYEGDRNVTKTLETELERSDWS
LLILHYLGLDHIGHVEGNASPRVPLKLKEMDEVVKKILDHKSFPNVLLML
TGDHGMADGGGHGGNTPAETLVPLYLYYNNCSKTPSASKRYNQIDLAPTL
SVLLSVEIPTLSIGCLIPEMLQSLSLEHQLYAYFYNAHHLLNKARVKFGH
EIVHRSDYYTWYQNATLLHKKLLRPLREGDGGGASQVYYQNAKLNYMRVA
REISDLLSESLVKFDYGFIAVGLALTTSTSLHIVISVLYLDLTEQLQLDG
LKVGQLWLSVIAAVVLNYTSHALDIIMTSSTLYSILLLVPISIAVYLTID
VAQALLKIALPPLYTRRLKISIPLPLPLLACYAIRTLTLGSSSFIEFEYN
TWYYLGNTLILLTAFRTLRWRITKTNVELNGRHLYTIASTCLWQMRKVLV
VLMLLTLMRYIHRLQAIRSTVVIFSMLLLWARLHRHSQLPQSLASGAALF
MVYCFRGLNGQVLFFDVPSHMAAKLMVPTLVIFWCCLALVLMLGYRAALP
QAHSFGKVPPTGALLQLLQTNLTSSLLLAALLQRVHNILLLPVLLVALQQ
TYKLCDVYGTSARKFSVRLVHVYKIIMTIFLARMFFFYQGNSNSLSTIDL
TPGYIGQTNYNPSIVAIFVTLNTYSADIHAFLYLVVHTLRSDLRSVGIMQ
LHPPYSIAADSLIAPLYAALIMLPAAFYLCLLVGFRYHLFIYSVFSPKVL
YDCYTVLVFYLVFLVTSLYFKLFKHDAASFLDH
BO35108.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:00:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2144-PA | 927 | CG2144-PA | 1..927 | 1..927 | 4769 | 100 | Plus |
| CG12263-PA | 1077 | CG12263-PA | 74..636 | 61..614 | 404 | 27 | Plus |
