BO35113.complete Sequence
1321 bp assembled on 2013-12-04
GenBank Submission: KX794567
> BO35113.complete
GAAGTTATCAGTCGACATGCCTTCCAGCTGCTCTTTTGAGCTCGATCGCC
GCGAACCCATTTACTACAGTGGTGAGACGGTCAATGGAAGGGCCATTCTG
ACAACAACATCCGAAAAGTCTGTGAACGAGGTATACATTCTTTTCGAGGG
CGAGGCAAAGGTGCGATGGGATGAGCGGCGAACAAGGACGAGAGGTGGAA
AGACCGAGCACTACACGGAGTATTTCCGAGGCAAGCAGCAGTACTTGTAC
ACCCGGACATCGGTCTTTGGATCCGGGAATCTGCCGCCAGGTACGCACAC
CTACAACTTCTGCATTCCACTGCCCCTGGAATGCCCCTCATCAGTGGTGG
CCCAGTACGGAAAAATCTTCTACGAGGTCTCCGTGGTCATCGATCGCCAG
TGGCGCTTCAACAACGTCTTCAAGCAGCCACTGACGGTCATACAGACCTA
CAACCTCAACATGAGCCCCCAATTGCTGATGCCCCTAGTCCGAGAGGACA
TCAAGCACTTTTGCTGTTGGCCCTGCAGTTCAGGCCCGGTTCTATCGACA
TTAACAATACCCTTCGGTGGTTACGCGCCTGGTCAGAAGATACGCTTTAC
TCTGGAGATTGACAACCAGTCGAGTGGCTATGATCTGAATGGGATCGAAC
TGAAACTTAAGCAGATTTACAAATTCCAGGCTCAAACGCCGCACCACAAA
ACTCGCGAAAAGGAGCACAGCCTCAACAAAAGTTGCCAGCAGGAGCGCGT
TTTGAGGCTCTCAAAGAAAAAAATTGAAGGAACCCTGGCTATTCCAGCAG
TACCGCCCTCTTCCCGCACCGAAGGCATCATTTCGGTTAGTTACCAAGTT
ATCCTCACGATCAGCACTGGCGACTGCCACGTGGACTCGGACTTTGAGGT
GCCGATTGTAATTGGCACCATACCATTGATCCAAAGTGCCGAGAATCCAG
CCAGTGCAGCACAGTGGATACCGGAAACGCCGGACACTCCTGCCGGAGCC
GCCGCAGATCTGCCTCCCAGTTATGACAAGTGCAAGCCACCAACCTTCGA
GGAGGCCACAAACTTTGGTGAAAGGTTCATCGACATCGATCAGGATGAGC
ACAATCGCACGGATGACTTTATTCCGCGTTACCCTATGTACACCAACTTT
GCCATGCCATCGGCTCCACCTCAACCCCCTGAAGAGTTCGCTACCAATCA
ACCAGTACCCGTTCTGTCACTACCTCATGATCCCACTGCCCCATTGGTCG
GTCAAAACAATACTGACCGTCCAACACAATCGTACGGTTGGAACACTAAC
TCAGCAAGCTTTCTAGACCAT
BO35113.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:39:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2641-RA | 1290 | CG2641-PA | 1..1287 | 17..1303 | 6420 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:39:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2641-RA | 1510 | CG2641-RA | 141..1427 | 17..1303 | 6420 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:39:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7795592..7796148 | 478..1034 | 2785 | 100 | Plus |
| 3R | 32079331 | 3R | 7794869..7795219 | 128..478 | 1755 | 100 | Plus |
| 3R | 32079331 | 3R | 7796248..7796516 | 1035..1303 | 1330 | 99.6 | Plus |
| 3R | 32079331 | 3R | 7794209..7794320 | 17..128 | 560 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:39:04 has no hits.
BO35113.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-12-04 09:59:54 Download gff for
BO35113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2641-RA | 141..1427 | 17..1305 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:19:25 Download gff for
BO35113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2641-RA | 141..1427 | 17..1305 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:19:25 Download gff for
BO35113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7794209..7794320 | 17..128 | 100 | -> | Plus |
| 3R | 7794870..7795219 | 129..478 | 100 | -> | Plus |
| 3R | 7795593..7796148 | 479..1034 | 100 | -> | Plus |
| 3R | 7796248..7796516 | 1035..1305 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-12-04 09:59:54 Download gff for
BO35113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3619931..3620042 | 17..128 | 100 | -> | Plus |
| arm_3R | 3620592..3620941 | 129..478 | 100 | -> | Plus |
| arm_3R | 3621315..3621870 | 479..1034 | 100 | -> | Plus |
| arm_3R | 3621970..3622238 | 1035..1305 | 98 | | Plus |
BO35113.pep Sequence
Translation from 16 to 1321
> BO35113.pep
MPSSCSFELDRREPIYYSGETVNGRAILTTTSEKSVNEVYILFEGEAKVR
WDERRTRTRGGKTEHYTEYFRGKQQYLYTRTSVFGSGNLPPGTHTYNFCI
PLPLECPSSVVAQYGKIFYEVSVVIDRQWRFNNVFKQPLTVIQTYNLNMS
PQLLMPLVREDIKHFCCWPCSSGPVLSTLTIPFGGYAPGQKIRFTLEIDN
QSSGYDLNGIELKLKQIYKFQAQTPHHKTREKEHSLNKSCQQERVLRLSK
KKIEGTLAIPAVPPSSRTEGIISVSYQVILTISTGDCHVDSDFEVPIVIG
TIPLIQSAENPASAAQWIPETPDTPAGAAADLPPSYDKCKPPTFEEATNF
GERFIDIDQDEHNRTDDFIPRYPMYTNFAMPSAPPQPPEEFATNQPVPVL
SLPHDPTAPLVGQNNTDRPTQSYGWNTNSASFLDH
BO35113.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:48:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2641-PA | 429 | CG2641-PA | 1..429 | 1..429 | 2308 | 100 | Plus |
| CG3014-PC | 488 | CG3014-PC | 1..376 | 1..353 | 655 | 36.6 | Plus |
| CG3014-PA | 488 | CG3014-PA | 1..376 | 1..353 | 655 | 36.6 | Plus |
| CG1105-PA | 422 | CG1105-PA | 6..419 | 5..385 | 476 | 31.5 | Plus |
| CG18745-PA | 433 | CG18745-PA | 1..411 | 1..394 | 437 | 27.5 | Plus |
