BO35115.complete Sequence
1225 bp assembled on 2013-12-04
GenBank Submission: KX800099
> BO35115.complete
GAAGTTATCAGTCGACATGCCCAGGGAACCAGCTAGTGTCTATGGGGAAA
AGGCAGAGAAGGTGAAAACGTACCAACCTGGCACAGTGGTAGTCCAGCCA
CCCGAACGACGGCCTCCCGAGCCGGAACACGATCGCCTGATGTTCATTCC
CGACCTAGACCAGGACATTACCCATCGGGATGTGTTCACCTATTTCAGCA
AATTTGGGGATTTGGAGAGGGTCAGCGTGAGGAATGGCATGAGTAACTTT
AACTACGCCATGGTGCGGTTTAGTCGCACTTCATACATGGAGCATGCCAT
CGAATCGAATCCACATCTGATCAAGGGATACCGATTGAACTGTCGCAAGG
CGAAAGAAAAAAGTACAAATAAGGGAAGTCAGCAAAACTCTGGGACCATA
AAAAAACCAAAGGCAACGATAACGCAGCCACACAAAGCTCCTGTAAGGCA
GGCAGAGAAAAACGACGCCAAACAAAGTGGTCACAAATCTTTAGAGAAGA
ATTCGAAGCCACCAATTAACAGATCATTGCTTCTTCAAAAACTGGTAGAA
CCCACGTCCTATAGTCCATTTACCGCCGTAAAATCTGATCGAAACTATGC
CTATGCATTAACCAATGACATTGGAATCTCCCGCTGGAGCTTTAACTTGT
TGAAATTCGAACCCAGTTCAGACGAGGTGAGGGCCCTGGAAAAGGGTCTT
TCCAGTTCGGCAAAGCTCCTACTGAGCATACGGAAGAAACTGGCTGCCGT
GCCCCACAAGTCTGTCGAGCCACCAGCTCCAAAGTGGCCACAAACTCCTA
GTGATAAAGCCGTTCCAAAAGTTACTCTTAAGATAGCTCCACCAATTCCT
GCCTCTAGTCCAGTGCTCCCATCCCTGCCACAAACTCCTAGTGATAAAGC
CGTTCCAAAAGTTATTTTTAAAATACCTCCACCACCTCCTGCCTCTAGTC
CAGTGCTCCCATCCTTGCCGAGCCTTCTGCCGATCACTCCCCTAGTGCCT
AAGCCCAAACCTGTTCTTCGAAAAGTTTCCAAGTCAGATCTCCGCTACGC
CGTTCTAGCCAGTTTGGGTCAGAACTATGTCCATCACTGCTACACTAATG
TGGCAGCTTATCGGCGGACCAAGAACTACGTCGACCTACAGCTCAGCGAG
ATGAAAGACCGACCCAGCATTTCGATGTTTGCGGATCAGATGTACGCACA
GAAAGAGGCAAGCTTTCTAGACCAT
BO35115.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:39:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14506-RC | 1194 | CG14506-PC | 1..1191 | 17..1207 | 5955 | 100 | Plus |
| CG14506-RB | 1215 | CG14506-PB | 60..1212 | 55..1207 | 5765 | 100 | Plus |
| CG14506-RC | 1194 | CG14506-PC | 771..863 | 877..969 | 360 | 92.5 | Plus |
| CG14506-RC | 1194 | CG14506-PC | 861..953 | 787..879 | 360 | 92.5 | Plus |
| CG14506-RB | 1215 | CG14506-PB | 792..884 | 877..969 | 360 | 92.5 | Plus |
| CG14506-RB | 1215 | CG14506-PB | 882..974 | 787..879 | 360 | 92.5 | Plus |
| CG14506-RB | 1215 | CG14506-PB | 1..40 | 17..56 | 200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:39:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14506-RC | 1356 | CG14506-RC | 86..1277 | 16..1207 | 5960 | 100 | Plus |
| CG14506-RB | 3302 | CG14506-RB | 146..1298 | 55..1207 | 5765 | 100 | Plus |
| CG14506-RC | 1356 | CG14506-RC | 857..949 | 877..969 | 360 | 92.5 | Plus |
| CG14506-RC | 1356 | CG14506-RC | 947..1039 | 787..879 | 360 | 92.5 | Plus |
| CG14506-RB | 3302 | CG14506-RB | 878..970 | 877..969 | 360 | 92.5 | Plus |
| CG14506-RB | 3302 | CG14506-RB | 968..1060 | 787..879 | 360 | 92.5 | Plus |
| CG14506-RB | 3302 | CG14506-RB | 86..126 | 16..56 | 205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:39:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29295822..29296974 | 1207..55 | 5765 | 100 | Minus |
| 3R | 32079331 | 3R | 29296060..29296152 | 879..787 | 360 | 92.5 | Minus |
| 3R | 32079331 | 3R | 29296150..29296242 | 969..877 | 360 | 92.5 | Minus |
| 3R | 32079331 | 3R | 29297055..29297095 | 56..16 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:39:12 has no hits.
BO35115.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-12-04 09:59:59 Download gff for
BO35115.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14506-RC | 87..1277 | 17..1209 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:19:28 Download gff for
BO35115.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14506-RC | 87..1277 | 17..1209 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:19:28 Download gff for
BO35115.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29295820..29296972 | 57..1209 | 99 | <- | Minus |
| 3R | 29297055..29297094 | 17..56 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-12-04 09:59:59 Download gff for
BO35115.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25121542..25122694 | 57..1209 | 99 | <- | Minus |
| arm_3R | 25122777..25122816 | 17..56 | 100 | | Minus |
BO35115.pep Sequence
Translation from 16 to 1225
> BO35115.pep
MPREPASVYGEKAEKVKTYQPGTVVVQPPERRPPEPEHDRLMFIPDLDQD
ITHRDVFTYFSKFGDLERVSVRNGMSNFNYAMVRFSRTSYMEHAIESNPH
LIKGYRLNCRKAKEKSTNKGSQQNSGTIKKPKATITQPHKAPVRQAEKND
AKQSGHKSLEKNSKPPINRSLLLQKLVEPTSYSPFTAVKSDRNYAYALTN
DIGISRWSFNLLKFEPSSDEVRALEKGLSSSAKLLLSIRKKLAAVPHKSV
EPPAPKWPQTPSDKAVPKVTLKIAPPIPASSPVLPSLPQTPSDKAVPKVI
FKIPPPPPASSPVLPSLPSLLPITPLVPKPKPVLRKVSKSDLRYAVLASL
GQNYVHHCYTNVAAYRRTKNYVDLQLSEMKDRPSISMFADQMYAQKEASF
LDH
BO35115.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:48:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14506-PC | 397 | CG14506-PC | 1..397 | 1..397 | 2064 | 100 | Plus |
| CG14506-PB | 404 | CG14506-PB | 1..404 | 1..397 | 2046 | 98.3 | Plus |
