BO35121.complete Sequence
658 bp assembled on 2013-12-04
GenBank Submission: KX794975
> BO35121.complete
GAAGTTATCAGTCGACATGTACTCCCATTTCTTAACAGAGAAAAAGCGTC
GCATATACGATGAGTATGGCAAAGATGGACTGGGCGATCGTGGCCAGAGT
CGCTCGCATGCCCGCCACCATTATAGCACACACGATTTCGATGACTTCGA
TATTTTGGGCGGCTTTCAGTTTGCATTCCGCCCGCCCGAGGAAGTGTTCC
GTGAGTTCTTCGGCATCCACTCGCCCTTCGCCGACTTATTCCGAGATGCC
AATGGACATTCGAATGGCAGCACAAGCGGCTCGAGTGGCAGTCGACGCAA
TGGCGGCAGCAGTGGATCATCTCGCCACCATCATCATCACCACCAGCACA
AAGTGGCCAGTCCGTTCGGGGCTCCAATGCTTAACTACTCAATGATGGAC
TTCTTTATGCCCACCAGCGGCTTCACCTCGTTCTCGTCGATGACCCACGG
CAATGGCAGCAGCGGTGTCACCCACATCTCCAGCGGACCCGGTGCCAGTG
TCAAGCGCACCTCCACTTCGACGGTGTTTGTGAATGGCAAGAAACTGATG
ACCAAACGGGTCGTCGAAAACGGCAAGGAAACTGTCTTTTCATATGAAAA
TGATGTTCTGAAATCAAAGACTGTGATGGGCTCCCTTCAAGCAAGCTTTC
TAGACCAT
BO35121.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:39:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mrj-RF | 627 | CG8448-PF | 1..624 | 17..640 | 3120 | 100 | Plus |
| mrj-RG | 1041 | CG8448-PG | 436..1038 | 38..640 | 3015 | 100 | Plus |
| mrj-RH | 1041 | CG8448-PH | 436..1038 | 38..640 | 3015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:39:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mrj-RF | 2112 | CG8448-RF | 517..1141 | 16..640 | 3125 | 100 | Plus |
| mrj-RG | 2499 | CG8448-RG | 926..1528 | 38..640 | 3015 | 100 | Plus |
| mrj-RH | 2274 | CG8448-RH | 701..1303 | 38..640 | 3015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:39:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16204441..16204756 | 559..244 | 1580 | 100 | Minus |
| 2R | 25286936 | 2R | 16204825..16205054 | 245..16 | 1150 | 100 | Minus |
| 2R | 25286936 | 2R | 16204300..16204382 | 640..558 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:39:30 has no hits.
BO35121.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-12-04 10:00:05 Download gff for
BO35121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mrj-RF | 518..1141 | 17..642 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:19:36 Download gff for
BO35121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mrj-RF | 518..1141 | 17..642 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:19:36 Download gff for
BO35121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16204296..16204381 | 559..642 | 97 | <- | Minus |
| 2R | 16204442..16204754 | 246..558 | 100 | <- | Minus |
| 2R | 16204825..16205053 | 17..245 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-12-04 10:00:05 Download gff for
BO35121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12091801..12091886 | 559..642 | 97 | <- | Minus |
| arm_2R | 12091947..12092259 | 246..558 | 100 | <- | Minus |
| arm_2R | 12092330..12092558 | 17..245 | 100 | | Minus |
BO35121.pep Sequence
Translation from 16 to 658
> BO35121.pep
MYSHFLTEKKRRIYDEYGKDGLGDRGQSRSHARHHYSTHDFDDFDILGGF
QFAFRPPEEVFREFFGIHSPFADLFRDANGHSNGSTSGSSGSRRNGGSSG
SSRHHHHHHQHKVASPFGAPMLNYSMMDFFMPTSGFTSFSSMTHGNGSSG
VTHISSGPGASVKRTSTSTVFVNGKKLMTKRVVENGKETVFSYENDVLKS
KTVMGSLQASFLDH
BO35121.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:48:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mrj-PF | 208 | CG8448-PF | 1..208 | 1..208 | 1114 | 100 | Plus |
| mrj-PA | 259 | CG8448-PA | 53..259 | 2..208 | 1076 | 97.6 | Plus |
| mrj-PC | 259 | CG8448-PC | 53..259 | 2..208 | 1076 | 97.6 | Plus |
| mrj-PB | 259 | CG8448-PB | 53..259 | 2..208 | 1076 | 97.6 | Plus |
| mrj-PD | 259 | CG8448-PD | 53..259 | 2..208 | 1076 | 97.6 | Plus |
