BO35122.complete Sequence
865 bp assembled on 2013-12-04
GenBank Submission: KX795066
> BO35122.complete
GAAGTTATCAGTCGACATGCGAGACCATCTAATGCTCATTGAAATTTACG
ATTATGCTGCGAAATTATTAAACAATATGACCGCCAGAGGAGTCAGGAAT
TCAGTGGGAAAATCAGCCGAGAGCCGTACTAAGGAATCAACAGGGAAATT
GGGCAGCCTGCTTGGCCGCACACTGGCCAAAGTGGCCAAAGTGGCCCGCT
CCAATCCCGCCCAGCACGTGACCAATCTGCCCGTTTCCGCACTCCTGCTC
CAGGCCCTCGACGTGGCGGACGTGGCCCGCGGACAGGGAATCGATTATCC
CATCACTAGCACCACCGGGACCACCTTCAACATTATCACCACCACCACCA
CCACCACCACCACCACCACGGGCAGTGACCCAACGGATGTGCTCGGCAGT
CAGCCGCCGGCGTTCTCATTTCCCGCCAACGTCACTGGAGCACCGGGAAG
TGCGGGGAATGCGAACGCATACCTGCCCGCGGGCAATCTCAGCGGTTTCA
TCGAATCCTCAACAACGGCGGTGATGAGCACACTGCCCATACCCACCAGC
ACCATGGCCACGCTCCAGGCCCAAACGGTGGCCACTTTCATCGCCGCCAC
CGGCAGCAAGAATCGCCCAACGACCATCGTTGTCTACCCAACGGTTTCAC
CCGAATCGATTGTCATCCCGATCGTCTCCTGTATCTTCGGCTTCCCCATC
CTGGCGCTTCTGGTGATCTGTTGCCTTCGAAGGAGGGCCAAGTTGGCCAG
GGAGAGGGATAGGAGGCGTAACTACGATATGCAGGACCATGCCGTCAGCC
TGATTACCGATCGTCGCGAGCTATCAGTCTACGTCCTGAACGAAGCCGCA
AGCTTTCTAGACCAT
BO35122.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:38:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43740-RB | 819 | CG43740-PB | 1..816 | 32..847 | 4080 | 100 | Plus |
| CG43740-RC | 1491 | CG43740-PC | 1..771 | 32..802 | 3855 | 100 | Plus |
| CG43740-RA | 987 | CG43740-PA | 1..771 | 32..802 | 3855 | 100 | Plus |
| CG43740-RC | 1491 | CG43740-PC | 800..844 | 803..847 | 225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:38:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43740-RB | 1850 | CG43740-RB | 119..949 | 17..847 | 4155 | 100 | Plus |
| CG43740-RC | 1878 | CG43740-RC | 119..904 | 17..802 | 3930 | 100 | Plus |
| CG43740-RA | 1878 | CG43740-RA | 119..904 | 17..802 | 3930 | 100 | Plus |
| CG43740-RC | 1878 | CG43740-RC | 933..977 | 803..847 | 225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:38:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10335824..10336451 | 17..644 | 3140 | 100 | Plus |
| X | 23542271 | X | 10343870..10344028 | 644..802 | 795 | 100 | Plus |
| X | 23542271 | X | 10346848..10346893 | 802..847 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:38:50 has no hits.
BO35122.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-12-04 09:59:49 Download gff for
BO35122.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43740-RB | 119..949 | 17..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:19:19 Download gff for
BO35122.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43740-RB | 119..949 | 17..849 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:19:19 Download gff for
BO35122.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10335824..10336451 | 17..644 | 100 | -> | Plus |
| X | 10343871..10344028 | 645..802 | 100 | -> | Plus |
| X | 10346849..10346893 | 803..849 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-12-04 09:59:49 Download gff for
BO35122.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10229857..10230484 | 17..644 | 100 | -> | Plus |
| arm_X | 10237904..10238061 | 645..802 | 100 | -> | Plus |
| arm_X | 10240882..10240926 | 803..849 | 95 | | Plus |
BO35122.pep Sequence
Translation from 16 to 865
> BO35122.pep
MRDHLMLIEIYDYAAKLLNNMTARGVRNSVGKSAESRTKESTGKLGSLLG
RTLAKVAKVARSNPAQHVTNLPVSALLLQALDVADVARGQGIDYPITSTT
GTTFNIITTTTTTTTTTTGSDPTDVLGSQPPAFSFPANVTGAPGSAGNAN
AYLPAGNLSGFIESSTTAVMSTLPIPTSTMATLQAQTVATFIAATGSKNR
PTTIVVYPTVSPESIVIPIVSCIFGFPILALLVICCLRRRAKLARERDRR
RNYDMQDHAVSLITDRRELSVYVLNEAASFLDH
BO35122.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:48:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43740-PB | 272 | CG43740-PB | 1..272 | 6..277 | 1355 | 100 | Plus |
| CG43740-PA | 328 | CG43740-PA | 1..258 | 6..263 | 1286 | 99.6 | Plus |
| CG43740-PC | 496 | CG43740-PC | 1..258 | 6..263 | 1286 | 99.6 | Plus |
