Clone BO35127 Report

Search the DGRC for BO35127

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:351
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptCG42560-RA
Protein status:BO35127.pep: Imported from assembly
Sequenced Size:334

Clone Sequence Records

BO35127.complete Sequence

334 bp assembled on 2013-12-04

GenBank Submission: KX799017

> BO35127.complete
GAAGTTATCAGTCGACATGACCTATCAAACGGATACAATGCTGAAGTTGG
TCGAAAAGCTTTTCCAACTGTTGCGACCCAGGATGTGTCAGTTTTCACAA
TCCAACAAGAACATATCCAAGCATTTGTTCGAAAAAGCCAGGGCGGAGGA
GAACATACATTTCCTTAAACTGCAACGGGAACAGCTGAAGTCGTTGCGAG
AAAAGATTCTCAGCCAGAAGAACGAAGTCACAACAAAGATCATCAAGGTG
GATAAGCAGATACAATCGTTGGAAAAAACCAAGACCGAAGGCTCACAGAT
GAACCATGAACAAAATGCAAGCTTTCTAGACCAT

BO35127.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:39:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG42560-RB 282 CG42560-PB 1..279 38..316 1395 100 Plus
CG42560-RA 282 CG42560-PA 1..279 38..316 1395 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:39:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG42560-RA 880 CG42560-RA 556..855 17..316 1500 100 Plus
CG42559-RA 880 CG42559-RA 556..855 17..316 1500 100 Plus
CG42560-RB 410 CG42560-RB 100..385 31..316 1430 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:39:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23599551..23599695 316..172 725 100 Minus
2R 25286936 2R 23599879..23599957 109..31 395 100 Minus
2R 25286936 2R 23599757..23599820 172..109 320 100 Minus
Blast to na_te.dros performed on 2014-11-28 14:39:48 has no hits.

BO35127.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-12-04 10:00:11 Download gff for BO35127.complete
Subject Subject Range Query Range Percent Splice Strand
CG42559-RA 556..855 17..318 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:19:43 Download gff for BO35127.complete
Subject Subject Range Query Range Percent Splice Strand
CG42559-RA 556..855 17..318 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:19:43 Download gff for BO35127.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23599549..23599694 173..318 98 <- Minus
2R 23599757..23599820 109..172 100 <- Minus
2R 23599880..23599956 32..108 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-12-04 10:00:11 Download gff for BO35127.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19487072..19487217 173..318 98 <- Minus
arm_2R 19487280..19487343 109..172 100 <- Minus
arm_2R 19487403..19487479 32..108 100 <- Minus

BO35127.pep Sequence

Translation from 16 to 334

> BO35127.pep
MTYQTDTMLKLVEKLFQLLRPRMCQFSQSNKNISKHLFEKARAEENIHFL
KLQREQLKSLREKILSQKNEVTTKIIKVDKQIQSLEKTKTEGSQMNHEQN
ASFLDH

BO35127.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:48:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG42560-PB 93 CG42560-PB 1..93 8..100 462 100 Plus
CG42560-PA 93 CG42560-PA 1..93 8..100 462 100 Plus