BO35136.complete Sequence
820 bp assembled on 2013-12-04
GenBank Submission: KX799944
> BO35136.complete
GAAGTTATCAGTCGACATGAAAGCATTCATAGCTATCCTGGCTTTGGCTG
TGGCCTCGGCCTCTGGCGCCACCATGCCCCGTTTGGCCACCGAGAAACTG
ACCCCGGTCCACACCAAGGACATGCAGGGTCGCATCACCAACGGCTATCC
GGCTGAGGAGGGCAAGGCTCCCTACACCGTCGGTCTGGGCTTCAGCGGCG
GCTGGTGGTGCGGTGGTTCGATCATCGCACACGATTGGGTGCTCACCGCC
GAGCACTGCATCGGAGATGCTGACTCCGTAACTGTCTACTTCGGAGCCAC
CTGGCGCACCAACGCCCAGTTCACCCACTGGGTTGGCAACGGTAACTTTA
TCAAGCACTCATCCGCCGATATTGCCCTCATCCGCATTCCCCACGTGGAC
TTCTGGCACATGGTGAACAAGGTGGAGCTGCCCAGCTACAACGATCGCTA
CAACGACTACAACGAATGGTGGGCTGTTGCCTGCGGCTGGGGAGGCACCT
ATGACGGCAGCCCACTGCCCGACTACCTGCAGTGTGTCGATCTCCAGATC
ATCCACAACTCCGAGTGCTCCGGATACTATGGAAGCGTGGGAGACAACAT
CCTCTGTGTCAGGACTCCCGACGGCAAGTCCACCTGCGGTGGTGACTCCG
GCGGCCCCCTGGTCACCCATGACGGTACCAAGCTTGTGGGGGTCACCAAC
TTTGGTTCCGTCGCCGGCTGCCAGTCGGGTGCTCCCGCTGGATTCCAGCG
TGTCACCTACCACCTGGACTGGATTCGCGACCATACCGGCATTGCTTACT
ACGCAAGCTTTCTAGACCAT
BO35136.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:39:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jon66Cii-RA | 789 | CG7170-PA | 1..786 | 17..802 | 3930 | 100 | Plus |
Jon66Ci-RA | 783 | CG7118-PA | 101..780 | 126..802 | 2145 | 88.3 | Plus |
Jon25Biii-RA | 777 | CG8871-PA | 101..776 | 126..801 | 1730 | 83.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:39:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jon66Cii-RA | 830 | CG7170-RA | 2..789 | 15..802 | 3940 | 100 | Plus |
Jon66Ci-RA | 838 | CG7118-RA | 119..798 | 126..802 | 2145 | 88.3 | Plus |
Jon25Biii-RA | 827 | CG8871-RA | 120..795 | 126..801 | 1730 | 83.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:39:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8392861..8393648 | 802..15 | 3940 | 100 | Minus |
3L | 28110227 | 3L | 8391658..8392337 | 126..802 | 2145 | 88.3 | Plus |
2L | 23513712 | 2L | 4949973..4950648 | 801..126 | 1730 | 83.7 | Minus |
3R | 32079331 | 3R | 30487110..30487524 | 792..375 | 540 | 75.8 | Minus |
3R | 32079331 | 3R | 30489367..30489781 | 375..792 | 510 | 75.4 | Plus |
3R | 32079331 | 3R | 29923787..29924214 | 805..375 | 500 | 74.9 | Minus |
3R | 32079331 | 3R | 29922615..29923042 | 375..805 | 485 | 74.7 | Plus |
2L | 23513712 | 2L | 4954326..4954758 | 802..367 | 430 | 74.3 | Minus |
2L | 23513712 | 2L | 4954815..4955009 | 328..140 | 400 | 81.5 | Minus |
2R | 25286936 | 2R | 8691843..8691968 | 367..492 | 315 | 83.3 | Plus |
3L | 28110227 | 3L | 6053938..6054145 | 492..285 | 290 | 76 | Minus |
3R | 32079331 | 3R | 29924350..29924523 | 260..93 | 280 | 78.7 | Minus |
3L | 28110227 | 3L | 6052750..6052857 | 367..474 | 270 | 83.3 | Plus |
3R | 32079331 | 3R | 29922306..29922479 | 93..260 | 265 | 78.2 | Plus |
2L | 23513712 | 2L | 4952294..4952469 | 792..617 | 250 | 76.1 | Minus |
2L | 23513712 | 2L | 4952785..4952996 | 328..126 | 245 | 75.5 | Minus |
3R | 32079331 | 3R | 30489090..30489231 | 125..260 | 225 | 78.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:39:40 has no hits.
BO35136.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-12-04 10:00:08 Download gff for
BO35136.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon66Cii-RA | 4..789 | 17..804 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:19:39 Download gff for
BO35136.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon66Cii-RA | 4..789 | 17..804 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:19:39 Download gff for
BO35136.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8392859..8393646 | 17..804 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-12-04 10:00:08 Download gff for
BO35136.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8385959..8386746 | 17..804 | 99 | | Minus |
BO35136.pep Sequence
Translation from 16 to 820
> BO35136.pep
MKAFIAILALAVASASGATMPRLATEKLTPVHTKDMQGRITNGYPAEEGK
APYTVGLGFSGGWWCGGSIIAHDWVLTAEHCIGDADSVTVYFGATWRTNA
QFTHWVGNGNFIKHSSADIALIRIPHVDFWHMVNKVELPSYNDRYNDYNE
WWAVACGWGGTYDGSPLPDYLQCVDLQIIHNSECSGYYGSVGDNILCVRT
PDGKSTCGGDSGGPLVTHDGTKLVGVTNFGSVAGCQSGAPAGFQRVTYHL
DWIRDHTGIAYYASFLDH
BO35136.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:48:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jon66Cii-PA | 262 | CG7170-PA | 1..262 | 1..262 | 1464 | 100 | Plus |
Jon66Ci-PA | 260 | CG7118-PA | 1..260 | 1..262 | 1198 | 82.2 | Plus |
Jon25Biii-PA | 258 | CG8871-PA | 1..258 | 1..261 | 1192 | 83.5 | Plus |
Jon99Ciii-PB | 265 | CG31362-PB | 1..265 | 1..261 | 926 | 65.6 | Plus |
Jon99Ciii-PA | 265 | CG31362-PA | 1..265 | 1..261 | 926 | 65.6 | Plus |