BO35137.complete Sequence
1084 bp assembled on 2013-12-04
GenBank Submission: KX797540
> BO35137.complete
GAAGTTATCAGTCGACATGGAGAACACCACAATGCTGGCTAATATTAGCC
TAAATGCAACCAGAAATGAGGAGAATATCACCTCATTCTTCACCGACGAA
GAGTGGCTGGCCATCAATGGCACTTTGCCGTGGATAGTGGGATTCTTCTT
CGGCGTCATCGCCATCACGGGATTCTTCGGCAACCTGCTGGTCATCCTGG
TGGTGGTCTTCAACAACAACATGCGCTCCACCACCAACCTGATGATTGTC
AATCTGGCTGCCGCTGATCTGATGTTCGTAATCCTCTGCATTCCCTTCAC
GGCCACCGATTACATGGTGTACTACTGGCCATATGGAAGGTTCTGGTGCC
GCAGTGTCCAGTACCTGATTGTGGTGACCGCCTTCGCCTCCATTTACACG
CTGGTGCTGATGTCCATCGATCGGTTCCTGGCGGTGGTTCATCCCATTCG
CTCGCGGATGATGAGGACGGAGAACATTACCCTGATTGCCATCGTGACTC
TGTGGATCGTGGTGCTGGTCGTTTCGGTGCCAGTGGCCTTCACCCACGAC
GTGGTGGTGGATTACGATGCAAAGAAGAACATCACCTACGGCATGTGCAC
CTTCACGACGAACGACTTCCTTGGTCCGCGCACCTACCAGGTCACCTTCT
TCATCAGCTCCTACCTGCTGCCCCTGATGATCATCAGCGGTCTCTACATG
CGCATGATCATGCGGCTCTGGCGCCAGGGAACCGGCGTCCGCATGTCCAA
GGAGTCGCAGCGCGGTCGCAAGCGGGTCACCCGACTCGTCGTCGTGGTGG
TCATCGCCTTCGCCTCGCTCTGGCTGCCTGTCCAGCTCATCCTGCTGCTC
AAGTCACTGGATGTCATCGAGACGAACACCCTCACCAAGCTAGTCATCCA
GGTCACCGCCCAGACTCTGGCCTACAGCAGCTCGTGTATCAATCCGCTGC
TCTACGCCTTCCTCTCCGAGAATTTCCGGAAGGCCTTCTACAAGGGCTTG
CAATCCAATAGACTTGGTATGTGGACAACGACGCATCAGGATGTGAGTTC
AGAGAAAACTACCTATGCAAGCTTTCTAGACCAT
BO35137.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:40:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AstA-R2-RB | 1053 | CG10001-PB | 1..1050 | 17..1066 | 5250 | 100 | Plus |
| AstA-R2-RC | 1074 | CG10001-PC | 1..979 | 17..995 | 4895 | 100 | Plus |
| AstA-R2-RA | 1074 | CG10001-PA | 1..979 | 17..995 | 4895 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:40:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AstA-R2-RB | 2077 | CG10001-RB | 756..1807 | 15..1066 | 5260 | 100 | Plus |
| AstA-R2-RC | 1994 | CG10001-RC | 756..1736 | 15..995 | 4905 | 100 | Plus |
| AstA-R2-RA | 2273 | CG10001-RA | 756..1736 | 15..995 | 4905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:40:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28743484..28744027 | 558..15 | 2720 | 100 | Minus |
| 3R | 32079331 | 3R | 28740706..28740985 | 835..556 | 1400 | 100 | Minus |
| 3R | 32079331 | 3R | 28740471..28740633 | 995..833 | 815 | 100 | Minus |
| 3R | 32079331 | 3R | 28738601..28738674 | 1066..993 | 370 | 100 | Minus |
| X | 23542271 | X | 3655852..3655904 | 393..445 | 190 | 90.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:40:06 has no hits.
BO35137.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-12-04 10:00:18 Download gff for
BO35137.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AR-2-RB | 758..1807 | 17..1068 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:19:51 Download gff for
BO35137.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AstA-R2-RB | 758..1807 | 17..1068 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:19:51 Download gff for
BO35137.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28740472..28740630 | 836..994 | 100 | <- | Minus |
| 3R | 28740706..28740984 | 557..835 | 100 | <- | Minus |
| 3R | 28738599..28738672 | 995..1068 | 97 | <- | Minus |
| 3R | 28743486..28744025 | 17..556 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-12-04 10:00:18 Download gff for
BO35137.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24566194..24566352 | 836..994 | 100 | <- | Minus |
| arm_3R | 24566428..24566706 | 557..835 | 100 | <- | Minus |
| arm_3R | 24564321..24564394 | 995..1068 | 97 | <- | Minus |
| arm_3R | 24569208..24569747 | 17..556 | 100 | | Minus |
BO35137.pep Sequence
Translation from 16 to 1084
> BO35137.pep
MENTTMLANISLNATRNEENITSFFTDEEWLAINGTLPWIVGFFFGVIAI
TGFFGNLLVILVVVFNNNMRSTTNLMIVNLAAADLMFVILCIPFTATDYM
VYYWPYGRFWCRSVQYLIVVTAFASIYTLVLMSIDRFLAVVHPIRSRMMR
TENITLIAIVTLWIVVLVVSVPVAFTHDVVVDYDAKKNITYGMCTFTTND
FLGPRTYQVTFFISSYLLPLMIISGLYMRMIMRLWRQGTGVRMSKESQRG
RKRVTRLVVVVVIAFASLWLPVQLILLLKSLDVIETNTLTKLVIQVTAQT
LAYSSSCINPLLYAFLSENFRKAFYKGLQSNRLGMWTTTHQDVSSEKTTY
ASFLDH
BO35137.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:48:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AstA-R2-PB | 350 | CG10001-PB | 1..350 | 1..350 | 1788 | 100 | Plus |
| AstA-R2-PC | 357 | CG10001-PC | 1..339 | 1..338 | 1661 | 97.1 | Plus |
| AstA-R2-PA | 357 | CG10001-PA | 1..339 | 1..338 | 1661 | 97.1 | Plus |
| AstA-R1-PD | 394 | CG2872-PD | 63..360 | 27..326 | 791 | 51 | Plus |
| AstA-R1-PB | 394 | CG2872-PB | 63..360 | 27..326 | 791 | 51 | Plus |
