Clone BO35139 Report

Search the DGRC for BO35139

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:351
Well:39
Vector:pDNR-Dual
Associated Gene/TranscriptCG17734-RC
Protein status:BO35139.pep: Imported from assembly
Sequenced Size:352

Clone Sequence Records

BO35139.complete Sequence

352 bp assembled on 2013-12-04

GenBank Submission: KX799591

> BO35139.complete
GAAGTTATCAGTCGACATGAGTTCCAAGTCCCTTTTCGACAGCGAGGAGG
ATGCCGCTCAGGCCAACAAATTATCCAGGAAAGCAAAGGAATCGCCCTTC
ATGCTTGTGGGTGAGTTTTGCCAATTTCCGGACAGCGAAAGTTTTGCCGC
CGTGACGTCACATGGAAACTTTTGGCTCAGCAGCCAGCTAGATACGCACA
TATCTACACACATTTACGAATGTACATTGCGTGTGCGGCGGGGAAGTCGG
CTAATCTTGACCTTGGCCATGAGTTTAACGTCAATTTGGGGTCACTTTTT
GATGTCACTGTGTGACATAACGGTGAATGCAGTAGCAAGCTTTCTAGACC
AT

BO35139.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:40:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG17734-RC 321 CG17734-PC 1..318 17..334 1590 100 Plus
CG17734-RB 288 CG17734-PB 1..96 17..112 480 100 Plus
CG17734-RA 306 CG17734-PA 1..96 17..112 480 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:40:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG17734-RC 1317 CG17734-RC 125..442 17..334 1590 100 Plus
CG17734-RB 1024 CG17734-RB 125..220 17..112 480 100 Plus
CG17734-RA 764 CG17734-RA 125..220 17..112 480 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:40:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11243558..11243875 334..17 1590 100 Minus
2R 25286936 2R 10420908..10421003 112..17 210 81.2 Minus
Blast to na_te.dros performed on 2014-11-28 14:40:16 has no hits.

BO35139.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-12-04 10:00:22 Download gff for BO35139.complete
Subject Subject Range Query Range Percent Splice Strand
CG17734-RC 125..442 17..336 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:19:54 Download gff for BO35139.complete
Subject Subject Range Query Range Percent Splice Strand
CG17734-RC 125..442 17..336 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:19:54 Download gff for BO35139.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11243555..11243875 17..336 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-12-04 10:00:22 Download gff for BO35139.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7069277..7069597 17..336 99   Minus

BO35139.pep Sequence

Translation from 16 to 352

> BO35139.pep
MSSKSLFDSEEDAAQANKLSRKAKESPFMLVGEFCQFPDSESFAAVTSHG
NFWLSSQLDTHISTHIYECTLRVRRGSRLILTLAMSLTSIWGHFLMSLCD
ITVNAVASFLDH

BO35139.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:48:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG17734-PC 106 CG17734-PC 1..106 1..106 545 100 Plus
CG17734-PB 95 CG17734-PB 1..32 1..32 154 100 Plus
CG17734-PA 101 CG17734-PA 1..32 1..32 154 100 Plus