Clone BO35140 Report

Search the DGRC for BO35140

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:351
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptCG4729-RE
Protein status:BO35140.pep: Imported from assembly
Sequenced Size:1225

Clone Sequence Records

BO35140.complete Sequence

1225 bp assembled on 2013-12-04

GenBank Submission: KX799625

> BO35140.complete
GAAGTTATCAGTCGACATGGTCGTGCACAAGAACTCTTTTGTTATCAAAA
TGGGTTCCCTGGAGAAGCTGAAACAATTGAGACTGATACACCTGTGCATC
GCGCTCACCTTCTTTACCAGCGGGCTGTGCATCAACTTTATCCAGCTGCT
GATGCACGTCTTTATCAAGCCCATAGACAAGCGACTCTTCCGCAAGTTGA
TGTACTATGCCTGCTATTCGCTTTACTCCCAACTTATCTTCGTGTCCGAT
TGGTATGCCGGCAGCAAGATGACTGTCTACATGGACAAGGAGGACTTCGA
GAAGCATGCCGGCAAGGAACACGTCCTTCTGATCATGAACCATAAATACG
AGATCGATTGGCTCAACGGCTGGATGATCTGCGAAAAGTTGGGCGTGCTG
GGCAACTGCAAGGCCTATGCGAAGAAGGCAATCCGCTACGTGCCCATCAT
CGGCTGGGGCTGGTGGCTGGCCGAGTTCGTCTTCCTCAATCGAAACTTCG
ACCAGGACAAGACCATCATCACCGAACAGCTCAAGGTGGTCTTCTCCTAT
CCCGATCCCACCTGGCTTTTGCTCAACGCCGAGGGCACTCGCTTCACTCC
CGCCAAGCACGAGGCATCCGTAAAATTCGCCCAGGAGAGGGGCATGACGG
TGCTGAAGCACCATTTGATCCCGCGCACCAAGGGATTCACCGCCAGCTTG
GCACCCATCCGCGGTCTCTGTCCGGTAATCTACGACATTAATCTAGCGTA
CAGGCCCACAGATAAGACCCCCGCCACAATGCTGAGTTTGCTGCATGGAA
AGAGCGTGGAACCGCACCTGCTGATGAGGCGTATTCCACTGGAACAGGTT
CCGGAGGATGAGAAGGAGGCGGCCGCCTGGCTGCAGAACCTGTTCGTGGA
GAAGGACAAGATCATCGATAGCTTCCTGGAGACGGGCAGCTTCTTTAAGA
CGTCCGGCATAAAGGAGGTTCCGGCATATGTGAATAAACGCCGGCTGTGC
TCACTCGTGAACTTTGTCTGCTGGGCGGTATTCTCTCTGTCCTGCATTTT
CTACTACGTGATCACATCCCTGCTGGCGGCCAACTGGACGGCCTTTATCA
CCGCACTTTCCGTCCTGGGACTTTTTTACTGGCTCATGGGTCAGGCCATC
AACAAGACGCAGATCAGCAAGGCATCTAATTATGGATCCTCCAAGTCGGT
CGCAAAGGCAAGCTTTCTAGACCAT

BO35140.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:40:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG4729-RE 1194 CG4729-PE 1..1191 17..1207 5955 100 Plus
CG4729-RB 1161 CG4729-PB 1..1158 50..1207 5790 100 Plus
CG4729-RC 1161 CG4729-PC 1..1158 50..1207 5790 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:40:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG4729-RE 1849 CG4729-RE 355..1546 16..1207 5960 100 Plus
CG4729-RC 1676 CG4729-RC 209..1373 43..1207 5825 100 Plus
CG4729-RB 1672 CG4729-RB 206..1369 44..1207 5820 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:40:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16383331..16383866 766..231 2680 100 Minus
3L 28110227 3L 16382382..16382741 1124..765 1800 100 Minus
3L 28110227 3L 16383927..16384113 230..44 935 100 Minus
3L 28110227 3L 16379722..16380156 744..310 540 74.9 Minus
3L 28110227 3L 16382075..16382157 1207..1125 415 100 Minus
3L 28110227 3L 16379425..16379558 969..836 325 82.8 Minus
Blast to na_te.dros performed on 2014-11-28 14:40:22 has no hits.

BO35140.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-12-04 10:00:24 Download gff for BO35140.complete
Subject Subject Range Query Range Percent Splice Strand
CG4729-RE 356..1546 17..1209 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:19:55 Download gff for BO35140.complete
Subject Subject Range Query Range Percent Splice Strand
CG4729-RE 356..1546 17..1209 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:19:55 Download gff for BO35140.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16382073..16382157 1125..1209 97 <- Minus
3L 16382382..16382739 767..1124 100 <- Minus
3L 16383331..16383866 231..766 100 <- Minus
3L 16383927..16384113 44..230 100 <- Minus
3L 16385428..16385454 17..43 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-12-04 10:00:24 Download gff for BO35140.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16375173..16375257 1125..1209 97 <- Minus
arm_3L 16375482..16375839 767..1124 100 <- Minus
arm_3L 16376431..16376966 231..766 100 <- Minus
arm_3L 16377027..16377213 44..230 100 <- Minus
arm_3L 16378528..16378554 17..43 100   Minus

BO35140.pep Sequence

Translation from 16 to 1225

> BO35140.pep
MVVHKNSFVIKMGSLEKLKQLRLIHLCIALTFFTSGLCINFIQLLMHVFI
KPIDKRLFRKLMYYACYSLYSQLIFVSDWYAGSKMTVYMDKEDFEKHAGK
EHVLLIMNHKYEIDWLNGWMICEKLGVLGNCKAYAKKAIRYVPIIGWGWW
LAEFVFLNRNFDQDKTIITEQLKVVFSYPDPTWLLLNAEGTRFTPAKHEA
SVKFAQERGMTVLKHHLIPRTKGFTASLAPIRGLCPVIYDINLAYRPTDK
TPATMLSLLHGKSVEPHLLMRRIPLEQVPEDEKEAAAWLQNLFVEKDKII
DSFLETGSFFKTSGIKEVPAYVNKRRLCSLVNFVCWAVFSLSCIFYYVIT
SLLAANWTAFITALSVLGLFYWLMGQAINKTQISKASNYGSSKSVAKASF
LDH

BO35140.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:48:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG4729-PE 397 CG4729-PE 1..397 1..397 2098 100 Plus
CG4729-PB 386 CG4729-PB 1..386 12..397 2043 100 Plus
CG4729-PC 386 CG4729-PC 1..386 12..397 2043 100 Plus
CG4729-PA 386 CG4729-PA 1..386 12..397 2043 100 Plus
CG4753-PC 380 CG4753-PC 10..376 26..392 1268 62.7 Plus