BO35140.complete Sequence
1225 bp assembled on 2013-12-04
GenBank Submission: KX799625
> BO35140.complete
GAAGTTATCAGTCGACATGGTCGTGCACAAGAACTCTTTTGTTATCAAAA
TGGGTTCCCTGGAGAAGCTGAAACAATTGAGACTGATACACCTGTGCATC
GCGCTCACCTTCTTTACCAGCGGGCTGTGCATCAACTTTATCCAGCTGCT
GATGCACGTCTTTATCAAGCCCATAGACAAGCGACTCTTCCGCAAGTTGA
TGTACTATGCCTGCTATTCGCTTTACTCCCAACTTATCTTCGTGTCCGAT
TGGTATGCCGGCAGCAAGATGACTGTCTACATGGACAAGGAGGACTTCGA
GAAGCATGCCGGCAAGGAACACGTCCTTCTGATCATGAACCATAAATACG
AGATCGATTGGCTCAACGGCTGGATGATCTGCGAAAAGTTGGGCGTGCTG
GGCAACTGCAAGGCCTATGCGAAGAAGGCAATCCGCTACGTGCCCATCAT
CGGCTGGGGCTGGTGGCTGGCCGAGTTCGTCTTCCTCAATCGAAACTTCG
ACCAGGACAAGACCATCATCACCGAACAGCTCAAGGTGGTCTTCTCCTAT
CCCGATCCCACCTGGCTTTTGCTCAACGCCGAGGGCACTCGCTTCACTCC
CGCCAAGCACGAGGCATCCGTAAAATTCGCCCAGGAGAGGGGCATGACGG
TGCTGAAGCACCATTTGATCCCGCGCACCAAGGGATTCACCGCCAGCTTG
GCACCCATCCGCGGTCTCTGTCCGGTAATCTACGACATTAATCTAGCGTA
CAGGCCCACAGATAAGACCCCCGCCACAATGCTGAGTTTGCTGCATGGAA
AGAGCGTGGAACCGCACCTGCTGATGAGGCGTATTCCACTGGAACAGGTT
CCGGAGGATGAGAAGGAGGCGGCCGCCTGGCTGCAGAACCTGTTCGTGGA
GAAGGACAAGATCATCGATAGCTTCCTGGAGACGGGCAGCTTCTTTAAGA
CGTCCGGCATAAAGGAGGTTCCGGCATATGTGAATAAACGCCGGCTGTGC
TCACTCGTGAACTTTGTCTGCTGGGCGGTATTCTCTCTGTCCTGCATTTT
CTACTACGTGATCACATCCCTGCTGGCGGCCAACTGGACGGCCTTTATCA
CCGCACTTTCCGTCCTGGGACTTTTTTACTGGCTCATGGGTCAGGCCATC
AACAAGACGCAGATCAGCAAGGCATCTAATTATGGATCCTCCAAGTCGGT
CGCAAAGGCAAGCTTTCTAGACCAT
BO35140.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:40:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4729-RE | 1194 | CG4729-PE | 1..1191 | 17..1207 | 5955 | 100 | Plus |
CG4729-RB | 1161 | CG4729-PB | 1..1158 | 50..1207 | 5790 | 100 | Plus |
CG4729-RC | 1161 | CG4729-PC | 1..1158 | 50..1207 | 5790 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:40:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4729-RE | 1849 | CG4729-RE | 355..1546 | 16..1207 | 5960 | 100 | Plus |
CG4729-RC | 1676 | CG4729-RC | 209..1373 | 43..1207 | 5825 | 100 | Plus |
CG4729-RB | 1672 | CG4729-RB | 206..1369 | 44..1207 | 5820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:40:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16383331..16383866 | 766..231 | 2680 | 100 | Minus |
3L | 28110227 | 3L | 16382382..16382741 | 1124..765 | 1800 | 100 | Minus |
3L | 28110227 | 3L | 16383927..16384113 | 230..44 | 935 | 100 | Minus |
3L | 28110227 | 3L | 16379722..16380156 | 744..310 | 540 | 74.9 | Minus |
3L | 28110227 | 3L | 16382075..16382157 | 1207..1125 | 415 | 100 | Minus |
3L | 28110227 | 3L | 16379425..16379558 | 969..836 | 325 | 82.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:40:22 has no hits.
BO35140.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-12-04 10:00:24 Download gff for
BO35140.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4729-RE | 356..1546 | 17..1209 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:19:55 Download gff for
BO35140.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4729-RE | 356..1546 | 17..1209 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:19:55 Download gff for
BO35140.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16382073..16382157 | 1125..1209 | 97 | <- | Minus |
3L | 16382382..16382739 | 767..1124 | 100 | <- | Minus |
3L | 16383331..16383866 | 231..766 | 100 | <- | Minus |
3L | 16383927..16384113 | 44..230 | 100 | <- | Minus |
3L | 16385428..16385454 | 17..43 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-12-04 10:00:24 Download gff for
BO35140.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16375173..16375257 | 1125..1209 | 97 | <- | Minus |
arm_3L | 16375482..16375839 | 767..1124 | 100 | <- | Minus |
arm_3L | 16376431..16376966 | 231..766 | 100 | <- | Minus |
arm_3L | 16377027..16377213 | 44..230 | 100 | <- | Minus |
arm_3L | 16378528..16378554 | 17..43 | 100 | | Minus |
BO35140.pep Sequence
Translation from 16 to 1225
> BO35140.pep
MVVHKNSFVIKMGSLEKLKQLRLIHLCIALTFFTSGLCINFIQLLMHVFI
KPIDKRLFRKLMYYACYSLYSQLIFVSDWYAGSKMTVYMDKEDFEKHAGK
EHVLLIMNHKYEIDWLNGWMICEKLGVLGNCKAYAKKAIRYVPIIGWGWW
LAEFVFLNRNFDQDKTIITEQLKVVFSYPDPTWLLLNAEGTRFTPAKHEA
SVKFAQERGMTVLKHHLIPRTKGFTASLAPIRGLCPVIYDINLAYRPTDK
TPATMLSLLHGKSVEPHLLMRRIPLEQVPEDEKEAAAWLQNLFVEKDKII
DSFLETGSFFKTSGIKEVPAYVNKRRLCSLVNFVCWAVFSLSCIFYYVIT
SLLAANWTAFITALSVLGLFYWLMGQAINKTQISKASNYGSSKSVAKASF
LDH
BO35140.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:48:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4729-PE | 397 | CG4729-PE | 1..397 | 1..397 | 2098 | 100 | Plus |
CG4729-PB | 386 | CG4729-PB | 1..386 | 12..397 | 2043 | 100 | Plus |
CG4729-PC | 386 | CG4729-PC | 1..386 | 12..397 | 2043 | 100 | Plus |
CG4729-PA | 386 | CG4729-PA | 1..386 | 12..397 | 2043 | 100 | Plus |
CG4753-PC | 380 | CG4753-PC | 10..376 | 26..392 | 1268 | 62.7 | Plus |