BO35141.complete Sequence
685 bp assembled on 2013-12-04
GenBank Submission: KX799751
> BO35141.complete
GAAGTTATCAGTCGACATGCGCGCCGTTTACGACTTGTTGCTGAGCAACG
CCTTTGATCCCAGAATGGTACTACAAAACCACAACACTGTGGTGGCCCGT
TCCACCTTGACGCCGAACAGCAGCAGCCAGAACTTTGGCTCCCAACATCC
AGCTGGAACGCCCAATGGATCCGGAACCGGACGTAGTCCCCTGAACGCCG
GACCCAGCACCCAACGTCCCATTATCGACCTGTTGGTGGCCATGGTGGCC
GTGCCGGTGCTTATCCTCTGCGCCCTGCAGTTGGAGAAGAATCTGCGGGA
CAATAGCGTGGAGTCTCGCTGGTTGGTTTTCGCCCTGGGCATCGGGATGC
TGGTGATCAGCGTGATCATCTGCGGTTATGTCACGCACCGCATGGGCGTC
TGCATTTGGGCGGGACCCATCGACGAGGCGGGAAACAGGGCCACCAATGG
AGCCATGCCACATATCAACTCCCAGAACGATGTGCTGCGCATTGTCGACT
CACTGCCGCCAAGTTACGAAAGCGTGGTCAAGTTCGAGCTACCGCCGCCG
ACCTACGAATGCCTGGTCATCAGCTGGGGTCGGTCGAAGGATCTGGAGCC
GGCACAGACCTCAGCCAAGCGAGGAGCTGGTGGATCCAACTCCCCGCCCG
GGTCCACCCTGCACATCGCAAGCTTTCTAGACCAT
BO35141.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:40:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13004-RD | 654 | CG13004-PD | 1..651 | 17..667 | 3255 | 100 | Plus |
| CG13004-RB | 606 | CG13004-PB | 1..603 | 65..667 | 3015 | 100 | Plus |
| CG13004-RC | 606 | CG13004-PC | 1..603 | 65..667 | 3015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:40:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13004-RD | 2321 | CG13004-RD | 945..1600 | 12..667 | 3265 | 99.8 | Plus |
| CG13004-RC | 936 | CG13004-RC | 42..651 | 58..667 | 3050 | 100 | Plus |
| CG13004-RA | 1392 | CG13004-RA | 62..671 | 58..667 | 3050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:40:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16827676..16828081 | 463..58 | 2030 | 100 | Minus |
| X | 23542271 | X | 16827402..16827605 | 667..464 | 1020 | 100 | Minus |
| X | 23542271 | X | 16829040..16829091 | 63..12 | 245 | 98.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:40:27 has no hits.
BO35141.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-12-04 10:00:26 Download gff for
BO35141.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13004-RD | 504..1154 | 17..669 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:19:57 Download gff for
BO35141.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13004-RD | 950..1600 | 17..669 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:19:57 Download gff for
BO35141.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16827400..16827605 | 464..669 | 99 | <- | Minus |
| X | 16827676..16828075 | 64..463 | 100 | <- | Minus |
| X | 16829040..16829086 | 17..63 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-12-04 10:00:26 Download gff for
BO35141.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16721433..16721638 | 464..669 | 99 | <- | Minus |
| arm_X | 16721709..16722108 | 64..463 | 100 | <- | Minus |
| arm_X | 16723073..16723119 | 17..63 | 100 | | Minus |
BO35141.pep Sequence
Translation from 16 to 685
> BO35141.pep
MRAVYDLLLSNAFDPRMVLQNHNTVVARSTLTPNSSSQNFGSQHPAGTPN
GSGTGRSPLNAGPSTQRPIIDLLVAMVAVPVLILCALQLEKNLRDNSVES
RWLVFALGIGMLVISVIICGYVTHRMGVCIWAGPIDEAGNRATNGAMPHI
NSQNDVLRIVDSLPPSYESVVKFELPPPTYECLVISWGRSKDLEPAQTSA
KRGAGGSNSPPGSTLHIASFLDH
BO35141.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:49:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13004-PD | 217 | CG13004-PD | 1..217 | 1..217 | 1130 | 100 | Plus |
| CG13004-PB | 201 | CG13004-PB | 1..201 | 17..217 | 1049 | 100 | Plus |
| CG13004-PC | 201 | CG13004-PC | 1..201 | 17..217 | 1049 | 100 | Plus |
| CG13004-PA | 201 | CG13004-PA | 1..201 | 17..217 | 1049 | 100 | Plus |
