BO35144.complete Sequence
1180 bp assembled on 2013-12-04
GenBank Submission: KX798252
> BO35144.complete
GAAGTTATCAGTCGACATGATGAAGTTTTCATTGCTTTTTCTGCTGGCCT
GGAGCTGTGTGTTTCTGGGAAGCACGGGTTCTCTAAATCGGATTGGGAAT
TCTGATATAGGCTTTAAATCCTTGGAGGAGCTAGTCTTGATTAGAAAGAC
TTTGGCTGCACAGGCACTAAAGCTAAGGGGCTTGGAGATAAATCTGCATC
GCGTGCTCAGCAAGGTGGTGTTACTCGCCGATGCAGTTGTGCAAGTACCT
GGAAGATACTCCTCCAAAGAAGATCCCCTTGCCGTTCTATCTGAACGTCT
AAATTTGTTGCTGGAGCGACTGAACCAGGAAGAAAGAATATCTACGAATT
TGCTGGAACTCAAAGAGTGGTCAACTAAAGTGTGCCAAGAACCTTCCCCA
AGCCAGACCTTACCAAAGGAACTTACTGAAGAAAAGGACGAGCCGAAAGT
GGACTTTTACCAGCCCGCCAAATCCGATTGCCATGAGCTTGACGAAGGTG
TCCGGGTGGATGGCGTCTATAGGTTTCTGGTTCCGGAGCGCAATGAAGTC
CAGCGTGATTTGTACGAGCGTTATTGCGCCTTCGCCACCGACGGCCCCGC
CTGGACAGTGATCCAGAGTAGAGGCGGCTCCTTCGATCCGCACGAAAATT
TCAATCGCAGCTGGGACGAGTATCGCGCGGGTTTTGGTAACTTATCCCGA
GACTTCTGGTTTGGCAACGAGTTCGCGCACAAGATTCTCTACCGCGACGA
TCATGAGCTGAGAATTGAGCTGCAGGAGGCAGGGGAACCGCTGGATTGGG
CGGAGTATCCACTCTTCTGGCTAGACAGCGAGAGTTATAACTATCAGCTT
TCGGTGGCTGGTGAATTCCGTGGTTCACTACCGGACGCTCTGGAGCAGCA
CAATCGGATGGATTTCAGCACTTACGATCGGCGAAGGAACCACGCGAAAT
CGGCAGATTCCACCTGTGGCGAGGATTACGGTGGTGGCTGGTGGTTTGAT
CGCTGCACACAGTGCAATCTGAATGGAGAACATGGTGTCCACCAGAGAGC
AAGTCCAGCCATTATCTGGATGAACTGGCGGACCGGGACCGATAAACCGA
AGAGCTCGCGGATGATGATTCGACCCGTAAATCCCACTCCGGGCGATAAC
TCTGATGGGGATGCAAGCTTTCTAGACCAT
BO35144.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:40:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9593-RB | 1149 | CG9593-PB | 1..1146 | 17..1162 | 5730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:40:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9593-RB | 1270 | CG9593-RB | 3..1153 | 12..1162 | 5740 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:40:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15802826..15803536 | 452..1162 | 3555 | 100 | Plus |
| 3R | 32079331 | 3R | 15802339..15802769 | 22..452 | 2155 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 14:40:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Stalker4 | 7359 | Stalker4 STALKER4 7359bp | 2604..2657 | 80..27 | 117 | 68.5 | Minus |
| Stalker | 7256 | Stalker STALKER 7256bp | 2498..2551 | 80..27 | 117 | 68.5 | Minus |
BO35144.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-12-04 10:00:30 Download gff for
BO35144.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9593-RB | 8..1153 | 17..1164 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:20:03 Download gff for
BO35144.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9593-RB | 8..1153 | 17..1164 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:20:03 Download gff for
BO35144.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15802334..15802769 | 17..452 | 99 | -> | Plus |
| 3R | 15802827..15803536 | 453..1164 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-12-04 10:00:30 Download gff for
BO35144.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11628056..11628491 | 17..452 | 99 | -> | Plus |
| arm_3R | 11628549..11629258 | 453..1164 | 99 | | Plus |
BO35144.pep Sequence
Translation from 16 to 1180
> BO35144.pep
MMKFSLLFLLAWSCVFLGSTGSLNRIGNSDIGFKSLEELVLIRKTLAAQA
LKLRGLEINLHRVLSKVVLLADAVVQVPGRYSSKEDPLAVLSERLNLLLE
RLNQEERISTNLLELKEWSTKVCQEPSPSQTLPKELTEEKDEPKVDFYQP
AKSDCHELDEGVRVDGVYRFLVPERNEVQRDLYERYCAFATDGPAWTVIQ
SRGGSFDPHENFNRSWDEYRAGFGNLSRDFWFGNEFAHKILYRDDHELRI
ELQEAGEPLDWAEYPLFWLDSESYNYQLSVAGEFRGSLPDALEQHNRMDF
STYDRRRNHAKSADSTCGEDYGGGWWFDRCTQCNLNGEHGVHQRASPAII
WMNWRTGTDKPKSSRMMIRPVNPTPGDNSDGDASFLDH
BO35144.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:49:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9593-PB | 382 | CG9593-PB | 1..382 | 1..382 | 2055 | 100 | Plus |
| CG8642-PB | 429 | CG8642-PB | 138..412 | 84..370 | 336 | 29.3 | Plus |
| CG30281-PA | 291 | CG30281-PA | 51..273 | 134..370 | 312 | 34.3 | Plus |
| CG30280-PB | 272 | CG30280-PB | 75..262 | 183..370 | 310 | 32.6 | Plus |
| CG5550-PA | 246 | CG5550-PA | 28..245 | 144..370 | 294 | 31.5 | Plus |
