BO35148.complete Sequence
760 bp assembled on 2013-12-04
GenBank Submission: KX795707
> BO35148.complete
GAAGTTATCAGTCGACATGGTGAAACTAATTGCTAGCCTGCTCCTGTTGG
CCGTGGTGGCCCAGGCCTATGGAGATTTCAAGTCCAAGCAAGAAAGCAAG
AGTTTCGTGAGAGAGCTTCAAAGGGAGCGAGAAGAGCATCAACTAAAAGA
AAAACAAAACCTAAGCCATGAAGGTCAAGACCAAGAGTGCAAAGGCTCCC
TGGCTGTTCCTGAGATTACCAAGGACTGGGTGGACATGAAGGATGCCTGC
ATAAAGGGCATGCGCAATCAGATCCAGGAGGAGATCAACGCCTCCTACCA
GTACTTGGCCATGGGCGCCTACTTCTCCCGCGACACCGTCAACCGCCCTG
GATTCGCCGAGCACTTCTTCAAGGCCGCCAAGGAGGAACGTGAGCACGGA
TCCAAGCTGGTGGAGTACCTGTCCATGCGCGGTCAACTGACCGAGGGAGT
CAGCGATCTGATCAATGTGCCGACTGTGGCCAAGCAGGAGTGGACCGATG
GTGCCGCCGCCCTGTCCGACGCCCTCGACCTGGAGATCAAGGTGACCAAG
TCCATCCGCAAGCTGATCCAGACCTGCGAGAACAAGCCCTACAACCACTA
CCACCTGGTGGACTACCTGACCGGTGTCTATCTGGAGGAGCAGCTCCACG
GACAGCGCGAGCTCGCCGGCAAGCTGACCACTCTCAAGAAGATGATGGAC
ACCAACGGCGAACTGGGCGAGTTCCTGTTCGACAAGACCCTGGCAAGCTT
TCTAGACCAT
BO35148.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:40:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fer1HCH-RG | 729 | CG2216-PG | 1..726 | 17..742 | 3630 | 100 | Plus |
| Fer1HCH-RF | 729 | CG2216-PF | 1..726 | 17..742 | 3630 | 100 | Plus |
| Fer1HCH-RI | 738 | CG2216-PI | 1..735 | 17..742 | 3505 | 98.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:40:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fer1HCH-RG | 1246 | CG2216-RG | 107..832 | 17..742 | 3630 | 100 | Plus |
| Fer1HCH-RF | 981 | CG2216-RF | 71..796 | 17..742 | 3630 | 100 | Plus |
| Fer1HCH-RI | 1009 | CG2216-RI | 90..824 | 17..742 | 3505 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:40:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30386319..30386598 | 472..193 | 1400 | 100 | Minus |
| 3R | 32079331 | 3R | 30385987..30386257 | 742..472 | 1355 | 100 | Minus |
| 3R | 32079331 | 3R | 30386717..30386828 | 195..84 | 560 | 100 | Minus |
| 3R | 32079331 | 3R | 30387464..30387530 | 83..17 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:40:02 has no hits.
BO35148.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-12-04 10:00:17 Download gff for
BO35148.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer1HCH-RF | 71..796 | 17..744 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:19:49 Download gff for
BO35148.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer1HCH-RF | 71..796 | 17..744 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:19:49 Download gff for
BO35148.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30385985..30386256 | 473..744 | 99 | <- | Minus |
| 3R | 30386319..30386596 | 195..472 | 100 | <- | Minus |
| 3R | 30386718..30386828 | 84..194 | 100 | <- | Minus |
| 3R | 30387464..30387530 | 17..83 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-12-04 10:00:17 Download gff for
BO35148.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26211707..26211978 | 473..744 | 99 | <- | Minus |
| arm_3R | 26212041..26212318 | 195..472 | 100 | <- | Minus |
| arm_3R | 26212440..26212550 | 84..194 | 100 | <- | Minus |
| arm_3R | 26213186..26213252 | 17..83 | 100 | | Minus |
BO35148.pep Sequence
Translation from 16 to 760
> BO35148.pep
MVKLIASLLLLAVVAQAYGDFKSKQESKSFVRELQREREEHQLKEKQNLS
HEGQDQECKGSLAVPEITKDWVDMKDACIKGMRNQIQEEINASYQYLAMG
AYFSRDTVNRPGFAEHFFKAAKEEREHGSKLVEYLSMRGQLTEGVSDLIN
VPTVAKQEWTDGAAALSDALDLEIKVTKSIRKLIQTCENKPYNHYHLVDY
LTGVYLEEQLHGQRELAGKLTTLKKMMDTNGELGEFLFDKTLASFLDH
BO35148.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:48:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fer1HCH-PG | 242 | CG2216-PG | 1..242 | 1..242 | 1243 | 100 | Plus |
| Fer1HCH-PF | 242 | CG2216-PF | 1..242 | 1..242 | 1243 | 100 | Plus |
| Fer1HCH-PI | 245 | CG2216-PI | 1..245 | 1..242 | 1229 | 98.8 | Plus |
| Fer1HCH-PD | 205 | CG2216-PD | 1..205 | 1..242 | 997 | 84.3 | Plus |
| Fer1HCH-PC | 205 | CG2216-PC | 1..205 | 1..242 | 997 | 84.3 | Plus |
