BO35160.complete Sequence
718 bp assembled on 2013-12-04
GenBank Submission: KX795482
> BO35160.complete
GAAGTTATCAGTCGACATGTTTGACTATTCGGCTGACAAAGCTCGGGAGA
GTGTGAAGCGGAGTCTGGAGCGGCTCCAGTTGGACAGGGTGGACATACTA
CAGGTTCATGACGTGGACGCGGCACCCAATCTAGACATAGTGCTGAATGA
GACCATACCCGTCCTCGAGGAGTACGTCCAGGCGGGAAAGGCTCGATTCA
TCGGAGTCACCGCCTACGATGTGGACGTGCTGAAGGAGTGTGCCGAGCGG
GGCAAGGGTCGCATTCAGGTGGTGCTCAACTATGCTCGTTACACCCTTTT
AGACAACACCTTGCTGCGCTACATGAAGGACTTCCAGAAAATGGGAGTGG
GCGTTGTCTGTGCGGCCGCTCACTCATTGGGACTCTTGAGAAACGCTGGA
CCACATGCATCGCATCCCGGTAGTCAGGAAATCCTGGCCGTGGCCAAACG
GGGGGCCGAAATCTGCCAGCAGAGGAACGTGGAGCTGGGAAAGCTGGCCA
TGTACTATACGATGCAACTGGATGGGGCGGCCACCTTCCTCATCGGCATC
CCCAACCGAAAGCTGCTGCGGATTAACCTGGACGCGATCTTCGACGGTCT
CACTTCCCACGAACAGGAAGTGCTGCAGTATTTGCGCGAAAACGTCTTTA
CCAAGTCCTACAGTTGGGGATCCACTTTATCCACGGCTAAGTTGTTAAAG
GCAAGCTTTCTAGACCAT
BO35160.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:40:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12224-RC | 687 | CG12224-PC | 1..684 | 17..700 | 3420 | 100 | Plus |
| CG12224-RB | 687 | CG12224-PB | 1..684 | 17..700 | 3420 | 100 | Plus |
| CG3397-RA | 1029 | CG3397-PA | 343..1016 | 17..690 | 2575 | 92.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:40:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12224-RC | 1628 | CG12224-RC | 852..1535 | 17..700 | 3420 | 100 | Plus |
| CG12224-RB | 1109 | CG12224-RB | 333..1016 | 17..700 | 3420 | 100 | Plus |
| CG3397-RA | 1187 | CG3397-RA | 376..1049 | 17..690 | 2575 | 92.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:40:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11981012..11981554 | 642..100 | 2715 | 100 | Minus |
| 3R | 32079331 | 3R | 11983486..11984028 | 642..100 | 2070 | 92.1 | Minus |
| 3R | 32079331 | 3R | 11981604..11981692 | 105..17 | 445 | 100 | Minus |
| 3R | 32079331 | 3R | 11984078..11984166 | 105..17 | 340 | 92.1 | Minus |
| 3R | 32079331 | 3R | 11980797..11980854 | 700..643 | 290 | 100 | Minus |
| 3R | 32079331 | 3R | 11983236..11983283 | 690..643 | 195 | 93.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:40:54 has no hits.
BO35160.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-12-04 10:00:36 Download gff for
BO35160.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12224-RB | 339..1016 | 23..702 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:20:08 Download gff for
BO35160.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12224-RB | 339..1016 | 23..702 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:20:08 Download gff for
BO35160.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11980794..11980854 | 643..702 | 96 | <- | Minus |
| 3R | 11981012..11981550 | 104..642 | 100 | <- | Minus |
| 3R | 11981606..11981686 | 23..103 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-12-04 10:00:36 Download gff for
BO35160.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7806516..7806576 | 643..702 | 96 | <- | Minus |
| arm_3R | 7806734..7807272 | 104..642 | 100 | <- | Minus |
| arm_3R | 7807328..7807408 | 23..103 | 100 | | Minus |
BO35160.pep Sequence
Translation from 16 to 718
> BO35160.pep
MFDYSADKARESVKRSLERLQLDRVDILQVHDVDAAPNLDIVLNETIPVL
EEYVQAGKARFIGVTAYDVDVLKECAERGKGRIQVVLNYARYTLLDNTLL
RYMKDFQKMGVGVVCAAAHSLGLLRNAGPHASHPGSQEILAVAKRGAEIC
QQRNVELGKLAMYYTMQLDGAATFLIGIPNRKLLRINLDAIFDGLTSHEQ
EVLQYLRENVFTKSYSWGSTLSTAKLLKASFLDH
BO35160.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:49:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12224-PC | 228 | CG12224-PC | 1..228 | 1..228 | 1154 | 100 | Plus |
| CG12224-PB | 228 | CG12224-PB | 1..228 | 1..228 | 1154 | 100 | Plus |
| CG3397-PA | 342 | CG3397-PA | 115..342 | 1..228 | 1055 | 90.8 | Plus |
| CG18547-PA | 345 | CG18547-PA | 113..330 | 1..217 | 656 | 58.7 | Plus |
