BO35162.complete Sequence
1357 bp assembled on 2013-12-04
GenBank Submission: KX798518
> BO35162.complete
GAAGTTATCAGTCGACATGAAGCTAATTTCCACAGTTGTTTACCTGCTGG
TGGCATTCTACAAATTCGCCAAGAAACTCTTAATGGGTTCATTTAACTCG
GCCCCAAAGATCAACAATGTGGACTCCCAGGACGATGGCCTGGTACTGCC
CTCCGGTCTAAGCACCCCGGCTCTCCTCCAGCATGTCCAGCAACTGCGTG
GCGGTGGCATCGAGCAGCCATCGCTGCTCACCCGCGGCTTCCTAAAACCG
CTGCTGGCGGACGAGGATGTAGCCGACGGACTGCGATGCCTCAAGCTGAA
TTCCGTGTCGAGGGTTTGCAGTGCGCCAGTCGAGGGTGATGACATTCGAT
TGCTGCAGTGGAACATCCTATCACAAACTCTCGGGCAGCACAACGATGGA
TTTGTGCGCTGTCCCGAGGAGGCTCTCACCTGGGAGCACCGCAAGTACCT
GATTGTCCAGGAGATTCTGCAGAACCAGCCCGATGTGATTTGTCTGCAAG
AGGTAGACCACTTCAAGTTCCTGCAGACCGTGTTGGGTAGCCAGAACTAC
GCAGGCATCTTCTTCCCGAAACCGGATTCCCCGTGCCTGTACATCGAGCA
GAACAATGGACCCGATGGCTGTGCCATCTTCTACAAGAGGGACAAACTGC
AGCTGCAGGGATACGACACGAGGATCCTGGAAGTGTGGCGGGTGCAGAGC
AACCAGGTGGCCATCGCGGCCCGGCTGCGTATGCGATCCAGTGGTCGGGA
ATTCTGTGTGGCCACCACCCACTTAAAGGCCCGCCATGGCGCCCTTTTGG
CGAAATTACGGAACGAACAGGGACGTGATCTCATTAGGTTTGTGAAGCAG
TTTGCCGGAGATACGCCGCTGCTGCTCTGCGGCGATTTCAATGCCGAACC
GGTGGAGCCCATCTATGCCACGATCTTGGGATGTGATCTCCTCCGCTTGG
GCAGCGCCTATGCCGACGTGAAGCTAGACCGCGAGGAGATACTACATCCC
AACGCGGATGTCGGTGAGTTCGTCGCGAAATCGATGAAACGCGAGCCACC
CTACACCACCTGGAAAATTCGCGAAGAGGGCGAGGAATGTCACACCATCG
ACTACGTCTTTTACACACCCGATCGCCTCAAGATCAAAAACTGTCTAGAC
TTTCCGGCCGGAGAGCAAATTGGCAAGAATCGCACACCCAGCTTCCAATA
TCCATCGGATCACTTTTCCCTGGTGTGTGACTTTGAGCTACTGCCTCCGA
CGGAAAACGGAAAGGAAAGCGGCAGCGGAAGTGGGAGCGATGGTGAAAAT
GAAACGGAAGTGGAGGGCAGCAAGCATGGATCCATTCAAGCAAGCTTTCT
AGACCAT
BO35162.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:41:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cu-RF | 1326 | CG31299-PF | 1..1323 | 17..1339 | 6615 | 100 | Plus |
| cu-RG | 1446 | CG31299-PG | 184..1443 | 80..1339 | 6300 | 100 | Plus |
| cu-RE | 1341 | CG31299-PE | 81..1338 | 82..1339 | 6290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:41:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cu-RF | 1695 | CG31299-RF | 193..1515 | 17..1339 | 6615 | 100 | Plus |
| cu-RG | 1970 | CG31299-RG | 531..1790 | 80..1339 | 6300 | 100 | Plus |
| cu-RH | 1598 | CG31299-RH | 161..1418 | 82..1339 | 6290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:41:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11207549..11208181 | 500..1132 | 3165 | 100 | Plus |
| 3R | 32079331 | 3R | 11206906..11207138 | 82..314 | 1165 | 100 | Plus |
| 3R | 32079331 | 3R | 11208245..11208453 | 1131..1339 | 1045 | 100 | Plus |
| 3R | 32079331 | 3R | 11207360..11207482 | 378..500 | 615 | 100 | Plus |
| 3R | 32079331 | 3R | 11197784..11197848 | 17..81 | 325 | 100 | Plus |
| 3R | 32079331 | 3R | 11207192..11207255 | 314..377 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:41:32 has no hits.
BO35162.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-12-04 10:00:50 Download gff for
BO35162.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cu-RF | 193..1515 | 17..1341 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:20:26 Download gff for
BO35162.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cu-RF | 193..1515 | 17..1341 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:20:26 Download gff for
BO35162.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11197784..11197848 | 17..81 | 100 | -> | Plus |
| 3R | 11206906..11207138 | 82..314 | 100 | -> | Plus |
| 3R | 11207193..11207255 | 315..377 | 100 | -> | Plus |
| 3R | 11207360..11207481 | 378..499 | 100 | -> | Plus |
| 3R | 11207549..11208181 | 500..1132 | 100 | -> | Plus |
| 3R | 11208247..11208453 | 1133..1341 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-12-04 10:00:50 Download gff for
BO35162.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7023506..7023570 | 17..81 | 100 | -> | Plus |
| arm_3R | 7032628..7032860 | 82..314 | 100 | -> | Plus |
| arm_3R | 7032915..7032977 | 315..377 | 100 | -> | Plus |
| arm_3R | 7033082..7033203 | 378..499 | 100 | -> | Plus |
| arm_3R | 7033271..7033903 | 500..1132 | 100 | -> | Plus |
| arm_3R | 7033969..7034175 | 1133..1341 | 99 | | Plus |
BO35162.pep Sequence
Translation from 16 to 1357
> BO35162.pep
MKLISTVVYLLVAFYKFAKKLLMGSFNSAPKINNVDSQDDGLVLPSGLST
PALLQHVQQLRGGGIEQPSLLTRGFLKPLLADEDVADGLRCLKLNSVSRV
CSAPVEGDDIRLLQWNILSQTLGQHNDGFVRCPEEALTWEHRKYLIVQEI
LQNQPDVICLQEVDHFKFLQTVLGSQNYAGIFFPKPDSPCLYIEQNNGPD
GCAIFYKRDKLQLQGYDTRILEVWRVQSNQVAIAARLRMRSSGREFCVAT
THLKARHGALLAKLRNEQGRDLIRFVKQFAGDTPLLLCGDFNAEPVEPIY
ATILGCDLLRLGSAYADVKLDREEILHPNADVGEFVAKSMKREPPYTTWK
IREEGEECHTIDYVFYTPDRLKIKNCLDFPAGEQIGKNRTPSFQYPSDHF
SLVCDFELLPPTENGKESGSGSGSDGENETEVEGSKHGSIQASFLDH
BO35162.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:49:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cu-PF | 441 | CG31299-PF | 1..441 | 1..441 | 2327 | 100 | Plus |
| cu-PE | 446 | CG31299-PE | 1..446 | 1..441 | 2228 | 95.1 | Plus |
| cu-PG | 481 | CG31299-PG | 62..481 | 22..441 | 2227 | 100 | Plus |
| cu-PH | 419 | CG31299-PH | 1..419 | 23..441 | 2223 | 100 | Plus |
| cu-PC | 449 | CG31299-PC | 31..449 | 23..441 | 2223 | 100 | Plus |
