Clone BO35165 Report

Search the DGRC for BO35165

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:351
Well:65
Vector:pDNR-Dual
Associated Gene/Transcriptspin-RA
Protein status:BO35165.pep: Imported from assembly
Sequenced Size:1849

Clone Sequence Records

BO35165.complete Sequence

1849 bp assembled on 2014-03-03

GenBank Submission: KX796902

> BO35165.complete
GAAGTTATCAGTCGACATGTCGCTGAAACACCAGAAGCAATCCTACCAAC
CGCTCCCAACGGCGGCCGCCATGGACAATCCGGCGATGATCCAGAGCAGC
GGTAGCAGTGGGAGCAGCTCCTCTGAGGAGGGCGGGAGTCGTGAGGATGT
GGCCAATCTATCGCCGCTCGGACTGCCTACGACCTACTCGTCACAGCAAT
TGATGCCCTCGGATACGGACAGCATGGAGGAGGAGCGGCACCGACTGCGT
CCCCACCACCATCACCACCACCCACTGGGCGAGCACCACCACATCCCGGG
CATACCACCATCCGCCGTCGTGCCATCGCGTCTCTCCAGCGTGGGCAGAT
CGCAGTGGTTCACCGTTACCGTGCTATGCTTCGTCAACCTCATCAACTAC
ATGGATCGCTTTACGATCGCAGGAGTTCTCACAGATGTCCGAAATGATTT
CGATATTGGCAATGATAGTGCCGGACTTCTCCAGACGGTCTTCGTTATCT
CGTACATGGTATGCGCCCCCATCTTCGGCTATCTGGGCGATCGTTACTCC
CGCCCCTGGATAATGGCGGTGGGCGTGGGTCTGTGGAGCACCACCACCCT
ACTGGGGTCGTTCATGAAGCAGTTTGGATGGTTCATCGCCTTCAGAGCGC
TGGTCGGGATCGGCGAGGCATCGTACAGTACCATCGCACCGACGATTATC
TCGGATCTGTTCGTGCACGACATGCGCTCCAAGATGCTGGCACTGTTCTA
CTTTGCCATACCCGTGGGATCCGGTCTGGGATACATTGTGGGATCCAAGA
CAGCGCACCTGGCCAACGATTGGCGCTGGGCTCTGAGGGTCACGCCCATT
CTGGGCATTGTGGCAGTTTTCCTCATTTTGCTGATCAAGGATCCGGTGCG
GGGTCACAGCGAGGGATCGCACAATTTGGAGGCCACTACCTACAAGCAGG
ACATCAAGGCGTTGGTCAGGAACCGTTCCTTCATGCTCTCCACGGCTGGA
TTCACGTGCGTTGCCTTCGTGGCCGGAGCACTGGCCTGGTGGGGACCTTC
CTTCATCTATCTAGGCATGAAGATGCAGCCCGGCAACGAGAACATTGTCC
AGGACGATGTTGCGTTCAACTTCGGAGTCATCACCATGTTGGCGGGCCTG
CTGGGCGTGCCGCTGGGCTCGTTCCTGTCCCAGTACCTGGTTAAGCGTTA
TCCCACGGCGGATCCGGTAATCTGCGCCTTTGGGCTGCTCGTGAGTGCGC
CGCTGCTGACGGGCGCCTGTCTCTTGGTCAACAGCAATTCGGTTGGCACC
TATGCACTCATATTTTTCGGGCAGTTAGCTTTAAATTTGAATTGGGCAAT
TGTTGCGGACATACTGCTGTATGTGGTGGTTCCCACGCGACGTTCAACAG
CCGAGGCCTTCCAAATCCTCATCTCACACGCACTCGGTGATGCCGGCAGT
CCGTATTTGGTTGGAGCAATCTCCGAGGCCATCATGAAACACCTGCACAA
GAACCCCAGCGACTCTGGACTGACCACCGAGCTGCGAAGCATGTCCCAAG
TGGCAGGTTCCGCGATCAGTAATGCCACCCAGGTGATCGCGGAAGCCACC
ACCAGTTTGATGGAAACAGCACGCTCGTCAGCCTCTCAGGAATACTCTGA
TGTGGAGCAATTCGAGGGACTGCAATATGCGCTCTTCTCCACCAGTTTTG
TGGAGGTGCTGGGCGGCATTTTCTTCATATTCACCGCCTGCTTTATCATC
AAAGACAAGTACAATGCCACACGAGGACTGCAAGATGCCACGGCTCAGCA
ACAGCAGCGGGATGAGCGCGGTCAGATTGCCGCAAGCTTTCTAGACCAT

BO35165.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:01:33
Subject Length Description Subject Range Query Range Score Percent Strand
spin-RA 1818 CG8428-PA 1..1815 17..1831 9075 100 Plus
spin-RD 1893 CG8428-PD 1..1768 17..1784 8840 100 Plus
spin-RB 1893 CG8428-PB 1..1167 17..1183 5475 97.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:01:34
Subject Length Description Subject Range Query Range Score Percent Strand
spin-RA 3007 CG8428-RA 397..2211 17..1831 9075 100 Plus
spin-RD 3394 CG8428-RD 397..2164 17..1784 8840 100 Plus
spin-RB 3394 CG8428-RB 397..1563 17..1183 5475 97.9 Plus
spin-RD 3394 CG8428-RD 2360..2407 1784..1831 240 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:01:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16125377..16125783 17..423 2035 100 Plus
2R 25286936 2R 16131539..16131899 420..780 1805 100 Plus
2R 25286936 2R 16132308..16132635 780..1107 1640 100 Plus
2R 25286936 2R 16133422..16133683 1108..1369 1310 100 Plus
2R 25286936 2R 16136187..16136360 1469..1642 870 100 Plus
2R 25286936 2R 16136425..16136566 1643..1784 710 100 Plus
2R 25286936 2R 16136026..16136125 1369..1468 500 100 Plus
2R 25286936 2R 16137203..16137251 1783..1831 245 100 Plus
Blast to na_te.dros performed on 2014-11-28 15:01:32 has no hits.

BO35165.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-03-03 17:24:50 Download gff for BO35165.complete
Subject Subject Range Query Range Percent Splice Strand
spin-RA 397..2211 17..1833 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:29:33 Download gff for BO35165.complete
Subject Subject Range Query Range Percent Splice Strand
spin-RA 397..2211 17..1833 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:29:33 Download gff for BO35165.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16136187..16136360 1469..1642 100 -> Plus
2R 16136425..16136566 1643..1784 100 -> Plus
2R 16137205..16137251 1785..1833 95   Plus
2R 16133422..16133683 1108..1369 100 -> Plus
2R 16136027..16136125 1370..1468 100 -> Plus
2R 16125377..16125782 17..422 100 -> Plus
2R 16131542..16131899 423..780 100 -> Plus
2R 16132309..16132635 781..1107 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2014-03-03 17:24:50 Download gff for BO35165.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12023930..12024071 1643..1784 100 -> Plus
arm_2R 12024710..12024756 1785..1833 95   Plus
arm_2R 12020927..12021188 1108..1369 100 -> Plus
arm_2R 12023532..12023630 1370..1468 100 -> Plus
arm_2R 12023692..12023865 1469..1642 100 -> Plus
arm_2R 12012882..12013287 17..422 100 -> Plus
arm_2R 12019047..12019404 423..780 100 -> Plus
arm_2R 12019814..12020140 781..1107 100 -> Plus

BO35165.pep Sequence

Translation from 16 to 1849

> BO35165.pep
MSLKHQKQSYQPLPTAAAMDNPAMIQSSGSSGSSSSEEGGSREDVANLSP
LGLPTTYSSQQLMPSDTDSMEEERHRLRPHHHHHHPLGEHHHIPGIPPSA
VVPSRLSSVGRSQWFTVTVLCFVNLINYMDRFTIAGVLTDVRNDFDIGND
SAGLLQTVFVISYMVCAPIFGYLGDRYSRPWIMAVGVGLWSTTTLLGSFM
KQFGWFIAFRALVGIGEASYSTIAPTIISDLFVHDMRSKMLALFYFAIPV
GSGLGYIVGSKTAHLANDWRWALRVTPILGIVAVFLILLIKDPVRGHSEG
SHNLEATTYKQDIKALVRNRSFMLSTAGFTCVAFVAGALAWWGPSFIYLG
MKMQPGNENIVQDDVAFNFGVITMLAGLLGVPLGSFLSQYLVKRYPTADP
VICAFGLLVSAPLLTGACLLVNSNSVGTYALIFFGQLALNLNWAIVADIL
LYVVVPTRRSTAEAFQILISHALGDAGSPYLVGAISEAIMKHLHKNPSDS
GLTTELRSMSQVAGSAISNATQVIAEATTSLMETARSSASQEYSDVEQFE
GLQYALFSTSFVEVLGGIFFIFTACFIIKDKYNATRGLQDATAQQQQRDE
RGQIAASFLDH

BO35165.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:00:55
Subject Length Description Subject Range Query Range Score Percent Strand
spin-PA 605 CG8428-PA 1..605 1..605 3113 100 Plus
spin-PD 630 CG8428-PD 1..598 1..598 3036 98.8 Plus
spin-PC 605 CG8428-PC 1..605 1..605 2906 92.9 Plus
spin-PB 630 CG8428-PB 1..598 1..598 2829 91.6 Plus
spin-PE 402 CG8428-PE 1..365 1..365 1918 99.7 Plus