BO35168.complete Sequence
2995 bp assembled on 2014-07-07
GenBank Submission: KX793984
> BO35168.complete
GAAGTTATCAGTCGACATGACGAAAACGACAAAGCCCAAGGAGAAGGCAG
CGGCGGGAGGGGCGGTTATAGGGTCGGGATCGGGATTGGGTTCGGTGACC
AAGGCGGGCGGCGGTAGTCTGCTTTCGAATGCGGCGGACAGTAAGATCCG
CACGGCCAAGTCCAACAACAACAAGCGGCAGGCAGGACGAGCGGCGACAG
CATTAGCAGCTACAACAACAGCATCAGCCTTAGCGGCAACAACAACAGCG
GGAGCAACAGGATCAAATGCAGCAGCGAATGAGACGGAAATAGCGATCGA
AACGGAGAACGGAGAAGCAGCGACGCCGACTGCGGCAGCAACGGCCGCCG
CAGCGAATTTATCGTCACTTGAGTCCGCTCGCTCGCAGGCTCTCACTTCA
GTTGTCAGCGAAACAGCAAGGCAAGCGGTTACCACAGCAAACGCGTCGGC
AACATCAACATCAACAGTTACAGCAGCAACAGAAATAGCAACCGCAACAG
CAAGCGACACAGCAGCAACATCTGAAGCAGCGATCGATGACGATCCAAGT
GCGATAAATACTAACAATAATAATAATAATAGTAAAGCGCAGAACGACGC
GAGTGAAAGTGTTAAAACAAAAGTGATAAGCTACCATCAGTCTGAGGATC
AACAGCAACAGCAGCAGCAACAAGCCCATATCTACGAGCAACAGCAACAG
TTTCTCAGCCAGCAATTAATAAGCCACCATCAGCAGGAACAGCATCAGCA
GGCGCAGCAGCAACAGCATCAGCAGGTGGTGCAGGAGCAACACCAGGCCA
GTTGGCTGGCCTATGACCTGACCAGCGGATCAGCGGCAGCAGCAGCGGCG
GCAGCGGCAGCAGCATCGCATCCCCACCTCTTCGGGCAGTTCTCCTATCC
GCCCAGCCATCATACGCCTACCCAGCTCTACGAGCACTACCCCAGCACGG
ATCCCATAATGCGGAACAACTTTGCGTTCTACAGCGTCTACACCGGAGGC
GGTGGCGGAGTGGGCGTGGGCATGACTAGCCACGAGCATTTGGCAGCGGC
GGCGGCAGCGGCAGCAGCAGTGGCCCAGGGCACCACACCCAACATAGACG
AGGTCATCCAGGACACGCTGAAGGACGAGTGCTTCGAGGATGGCCACAGC
ACCGATTACCATGTGCTGACCTCCGTGTCCGATATGCATACGCTAAAGGA
CTCCAGTCCCTATGCCCTCACCCACGAGCAACTCCACCAGCAGCAGCACC
ATCACCAGCAGCAACTGCATCACCATCAGCAGCAGCAGCAACAACTTTAC
CACCAGCAACAGCAGCAGCAGCAGCAGCAACAACATCATCACCACCACAA
CAACTCCACCAGTTCGGCGGGCGGGGACTCCCCGTCGTCCTCGCACGCAC
TGTCCACCCTGCAGAGCTTCACCCAGCTGACCAGCGCCACCCAGCGTGAT
AGCCTCTCGCCGGAGAATGACGCCTACTTTGCGGCCGCCCAGCTCGGCAG
CAGCTTGCAGAACAGCTCTGTTTATGCTGGCTCGTTGCTTACTCAGACTG
CCAATGGCATTCAGTACGGCATGCAGTCCCCCAACCAAACACAAGCCCAT
CTCCAGCAGCAGCACCATCAGCAGCAGCAGCAACAACATCAGCAACACCA
GCAGCAGCAACTGCAGCAGCAGCAGCAGCAACATCACCACAATCAACACC
AGCACCACAACTCCAGCAGCAGCAGTCCGGGGCCAGCGGGTCTGCACCAC
TCGAGCTCCTCGGCGGCCACGGCGGCAGCGGTGGCTGCGGCAACGGCGGC
GGTCAATGGACACAACAGCTCCTTGGAGGACGGCTACGGATCGCCAAGGA
GCAGCCACAGTGGCGGCGGGGGCGGTGGTACTCTGCCAGCCTTCCAGCGG
ATCGCATACCCCAACAGTGGCTCCGTGGAACGTTACGCTCCGATAACCAA
TTATCGCGGTCAGAACGATACCTGGTTCGATCCGTTAAGCTACGCCACCT
CCTCTTCCGGGCAGGCGCAGTTGGGCGTCGGTGTTGGAGCCGGAGTGGTC
TCGAATGTGATACGGAATGGGCGGGCCATTTCGGCTGCTAATGCAGCAGC
TGCAGCCGCCGCGGATGGAACCACTGGACGCGTAGATCCTGGAACCTTTC
TCTCCGCCTCGGCATCGTTGTCAGCAATGGCCGCTGAATCAGGCGGGGAT
TTCTATAAACCCAACTCATTTAATGTGGGCGGCGGTGGCCGTAGTAAGGC
TAACACGAGTGGTGCCGCCAGCTCCTACTCCTGTCCAGGCTCGAATGCAA
CCTCGGCGGCGACTTCGGCGGTGGCGTCGGGAACGGCAGCAACTGCAGCG
ACGACGCTCGACGAGCACGTTAGTCGCGCCAATTCGAGACGCTTGAGCGC
CTCAAAGCGAGCCGGACTTTCCTGCTCCAACTGCCACACCACCCACACTT
CGTTGTGGCGCCGCAATCCCGCCGGAGAGCCCGTCTGCAATGCATGCGGC
CTGTACTATAAGCTCCACAGTGTCCCACGGCCACTGACCATGAAAAAGGA
CACCATTCAGAAACGCAAGCGCAAGCCGAAAGGAACGAAGAGCGAGAAGT
CCAAGTCAAAGTCAAAGAACGCTTTGAATGCCATCATGGAAAGTGGTTCA
TTGGTGACCAATTGCCATAACGTTGGTGTCGTCCTGGACAGCAGCCAGAT
GGATGTCAATGACGAAATATCTGCAAGCTCAGCAACTGAGCAGCAGCAGC
AACAGCGGCTCCACCAGCGACCACCAGTTGCTGGCCCAACTGCTGCCGAA
CTCCATTACGGCGGCAGCAGCAGCAGCAGCGGCGGCGGCAGCGGCGGCGA
TCAAGACGGAGGCCTTGTCGCTCACCTCCCAGGCCAACTGCTCCACAGCG
TCGGCGGGACTTATGGTCACCTCAACACCGACCACGGCATCGAGCACATT
ATCGTCCCTGAGTCACAGCAACATTATGCAAGCTTTCTAGACCAT
BO35168.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:10:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| srp-RA | 3795 | CG3992-PA | 1..2699 | 17..2715 | 13480 | 100 | Plus |
| srp-RB | 3750 | CG3992-PB | 1..2161 | 17..2177 | 10790 | 100 | Plus |
| srp-RG | 1410 | CG3992-PG | 1..1407 | 1571..2977 | 7035 | 100 | Plus |
| srp-RB | 3750 | CG3992-PB | 2332..2654 | 2393..2715 | 1615 | 100 | Plus |
| srp-RA | 3795 | CG3992-PA | 3162..3425 | 2714..2977 | 1320 | 100 | Plus |
| srp-RB | 3750 | CG3992-PB | 3117..3380 | 2714..2977 | 1320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:10:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| srp-RA | 4459 | CG3992-RA | 86..2785 | 16..2715 | 13485 | 100 | Plus |
| srp-RB | 4414 | CG3992-RB | 86..2247 | 16..2177 | 10795 | 100 | Plus |
| srp-RG | 3377 | CG3992-RG | 968..2429 | 1516..2977 | 7310 | 100 | Plus |
| srp-RB | 4414 | CG3992-RB | 2418..2740 | 2393..2715 | 1615 | 100 | Plus |
| srp-RA | 4459 | CG3992-RA | 3248..3511 | 2714..2977 | 1320 | 100 | Plus |
| srp-RB | 4414 | CG3992-RB | 3203..3466 | 2714..2977 | 1320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:10:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15994225..15995724 | 16..1515 | 7485 | 99.9 | Plus |
| 3R | 32079331 | 3R | 15999322..15999773 | 1512..1963 | 2260 | 100 | Plus |
| 3R | 32079331 | 3R | 16002870..16003133 | 2714..2977 | 1320 | 100 | Plus |
| 3R | 32079331 | 3R | 16001189..16001406 | 2178..2395 | 1090 | 100 | Plus |
| 3R | 32079331 | 3R | 15999843..16000059 | 1961..2177 | 1085 | 100 | Plus |
| 3R | 32079331 | 3R | 16001751..16001916 | 2395..2560 | 830 | 100 | Plus |
| 3R | 32079331 | 3R | 16002167..16002323 | 2558..2714 | 785 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 15:10:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2283..2956 | 126..795 | 453 | 56.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2992 | 163..868 | 445 | 57 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2266..2945 | 167..871 | 430 | 56.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2282..2955 | 1173..1819 | 419 | 57 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2268..2656 | 411..795 | 350 | 59.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2366..2989 | 138..795 | 337 | 56.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..7111 | 163..533 | 336 | 57.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2439..2999 | 163..700 | 323 | 56.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..7090 | 162..533 | 318 | 58 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6941 | 648..867 | 314 | 64 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6531..7182 | 211..859 | 305 | 55.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2323..3012 | 633..1348 | 284 | 54.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2384..2856 | 410..867 | 280 | 57.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2997 | 655..1354 | 275 | 53.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2362..2524 | 633..795 | 266 | 62.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2659 | 410..750 | 263 | 56.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2341..2501 | 633..796 | 263 | 64 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6783..6963 | 633..812 | 263 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2456..3034 | 131..699 | 257 | 54.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6750..6918 | 633..795 | 255 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2352..2846 | 406..889 | 251 | 54.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6766..7446 | 138..796 | 241 | 54.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2365..2552 | 616..802 | 235 | 59.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6860 | 204..342 | 234 | 64.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..6872 | 406..531 | 227 | 65.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2769..2963 | 163..368 | 221 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..7079 | 430..794 | 220 | 56.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2718..2934 | 140..354 | 216 | 58.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..7091 | 471..852 | 216 | 55.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1227 | 412..581 | 216 | 63.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2587..2903 | 184..533 | 215 | 58.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6824 | 422..522 | 215 | 71.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..6900 | 406..526 | 210 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1603 | 207..292 | 205 | 70.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6774..6899 | 2716..2842 | 201 | 66.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1064..1157 | 447..541 | 201 | 71.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6949 | 313..550 | 200 | 57.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2787..2979 | 139..342 | 198 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6924 | 480..702 | 195 | 58.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1049..1174 | 187..303 | 195 | 65.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1071..1165 | 164..257 | 193 | 71.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2446..2549 | 648..750 | 183 | 70.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6819..6952 | 633..772 | 182 | 61.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6437..7002 | 210..774 | 178 | 52.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1046..1136 | 438..531 | 175 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6804..6952 | 633..775 | 172 | 62.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 904..1163 | 477..749 | 160 | 56.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1482..1588 | 128..229 | 153 | 65.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2332..2466 | 2719..2842 | 152 | 63.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2923..3000 | 181..261 | 146 | 66.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1050..1171 | 385..503 | 143 | 59.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6836..6944 | 2730..2845 | 140 | 63.2 | Plus |
| BS | 5142 | BS BS 5142bp | 2016..2105 | 687..776 | 135 | 61.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1525..1598 | 648..724 | 134 | 69.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1077..1144 | 633..700 | 133 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1358..1629 | 430..714 | 130 | 57 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6494..6572 | 2699..2777 | 124 | 65 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 670..728 | 277..219 | 124 | 67.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2792..2938 | 2688..2840 | 121 | 58.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1109..1182 | 632..703 | 121 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1534..1591 | 2719..2775 | 116 | 69 | Plus |
BO35168.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-07 10:51:41 Download gff for
BO35168.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| srp-RA | 87..2782 | 17..2712 | 99 | <- | Plus |
| srp-RA | 3247..3511 | 2713..2979 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:32:53 Download gff for
BO35168.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| srp-RA | 87..2782 | 17..2712 | 99 | <- | Plus |
| srp-RA | 3247..3511 | 2713..2979 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:32:53 Download gff for
BO35168.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15994226..15995724 | 17..1515 | 99 | -> | Plus |
| 3R | 15999326..15999773 | 1516..1963 | 100 | -> | Plus |
| 3R | 15999846..16000059 | 1964..2177 | 100 | -> | Plus |
| 3R | 16001189..16001406 | 2178..2395 | 100 | -> | Plus |
| 3R | 16001752..16001916 | 2396..2560 | 100 | -> | Plus |
| 3R | 16002170..16002323 | 2561..2714 | 100 | -> | Plus |
| 3R | 16002871..16003133 | 2715..2979 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-07 10:51:41 Download gff for
BO35168.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11826911..11827128 | 2178..2395 | 100 | -> | Plus |
| arm_3R | 11827474..11827638 | 2396..2560 | 100 | -> | Plus |
| arm_3R | 11827892..11828045 | 2561..2714 | 100 | -> | Plus |
| arm_3R | 11828593..11828855 | 2715..2979 | 99 | | Plus |
| arm_3R | 11819948..11821446 | 17..1515 | 99 | -> | Plus |
| arm_3R | 11825048..11825495 | 1516..1963 | 100 | -> | Plus |
| arm_3R | 11825568..11825781 | 1964..2177 | 100 | -> | Plus |
BO35168.pep Sequence
Translation from 16 to 2995
> BO35168.pep
MTKTTKPKEKAAAGGAVIGSGSGLGSVTKAGGGSLLSNAADSKIRTAKSN
NNKRQAGRAATALAATTTASALAATTTAGATGSNAAANETEIAIETENGE
AATPTAAATAAAANLSSLESARSQALTSVVSETARQAVTTANASATSTST
VTAATEIATATASDTAATSEAAIDDDPSAINTNNNNNNSKAQNDASESVK
TKVISYHQSEDQQQQQQQQAHIYEQQQQFLSQQLISHHQQEQHQQAQQQQ
HQQVVQEQHQASWLAYDLTSGSAAAAAAAAAAASHPHLFGQFSYPPSHHT
PTQLYEHYPSTDPIMRNNFAFYSVYTGGGGGVGVGMTSHEHLAAAAAAAA
AVAQGTTPNIDEVIQDTLKDECFEDGHSTDYHVLTSVSDMHTLKDSSPYA
LTHEQLHQQQHHHQQQLHHHQQQQQQLYHQQQQQQQQQQHHHHHNNSTSS
AGGDSPSSSHALSTLQSFTQLTSATQRDSLSPENDAYFAAAQLGSSLQNS
SVYAGSLLTQTANGIQYGMQSPNQTQAHLQQQHHQQQQQQHQQHQQQQLQ
QQQQQHHHNQHQHHNSSSSSPGPAGLHHSSSSAATAAAVAAATAAVNGHN
SSLEDGYGSPRSSHSGGGGGGTLPAFQRIAYPNSGSVERYAPITNYRGQN
DTWFDPLSYATSSSGQAQLGVGVGAGVVSNVIRNGRAISAANAAAAAAAD
GTTGRVDPGTFLSASASLSAMAAESGGDFYKPNSFNVGGGGRSKANTSGA
ASSYSCPGSNATSAATSAVASGTAATAATTLDEHVSRANSRRLSASKRAG
LSCSNCHTTHTSLWRRNPAGEPVCNACGLYYKLHSVPRPLTMKKDTIQKR
KRKPKGTKSEKSKSKSKNALNAIMESGSLVTNCHNVGVVLDSSQMDVNDE
ISASSATEQQQQQRLHQRPPVAGPTAAELHYGGSSSSSGGGSGGDQDGGL
VAHLPGQLLHSVGGTYGHLNTDHGIEHIIVPESQQHYASFLDH
BO35168.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:07:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| srp-PA | 1264 | CG3992-PA | 1..948 | 1..942 | 4609 | 95.9 | Plus |
| srp-PB | 1249 | CG3992-PB | 1..933 | 1..942 | 4209 | 89.5 | Plus |
| srp-PG | 469 | CG3992-PG | 1..469 | 519..987 | 2444 | 100 | Plus |
| srp-PF | 746 | CG3992-PF | 1..430 | 519..942 | 1994 | 91.2 | Plus |
| srp-PD | 746 | CG3992-PD | 1..430 | 519..942 | 1994 | 91.2 | Plus |
