BO35169.complete Sequence
2956 bp assembled on 2014-03-03
GenBank Submission: KX798746
> BO35169.complete
GAAGTTATCAGTCGACATGTTTGAGCGCTTCCGACTGAACAACCTGACTA
GAACCTTTCGCCTGCGAGGAGGCGGCCCAGAACTGGCGCGCGACAAGAAG
ACCCCGCAACGGCAGCAATGCGTCACCGTCCTATTCCTAGATGACATCAC
GCACACCTTTCGGATCGAGAAACGTGCGAAAGGCTCTGAACTCCTGGATC
AGGTCTTTCAGTATCTCGAGTTATCCGAAAGGGACTACTTTGGCCTACTA
TTTCCACAGAAGCCAGGTGACGTCGTGAGATGGGTTGATGCTCAGAAGCA
GTTTAAGAAGCAATGCAGCAGCGTTTCCCTCGACAACGATGCCGTACCAT
TATTAGAGTTTAGGGTTAAGTTTTTTGTAAGCGATCCCAGCCGACTGCAG
GAGGAGTTCACACGCTACCAGTTCTATCTGCAGATCAAGCGCAACATTCT
ACTGGGCAAGCTGCCCTGCTCCAGCAACACCCAGTGCCTGCTTGCCAGCT
ACACTGTGCAATCCGAGTTGGGTGACTTTAACGCATTAGAACACCAGCCG
GGCTATCTGAGCGGAATGCAGCTGCTCTGCGACCAGACAACGGAGGCGGA
GCGGAAGGTTGGAGAACTGCACAAGTTGCACCGTGGGCAGCTACCGGCGG
ACGCGGAGTACAACTACCTGGAGCACGCTAAGCGATTGGAGCTATACGGG
ATTGACCTGCACAGGGCCACCGACTCCAACGGCAAGGAGCTGCAGCTGGG
CGTATCGGCCGTCGGACTGCTCGTCTTCCAGCATTCATTGCGCGTGAACA
CTTTCTCGTGGAGCAAGATGGTCAAGGTGTCGTTCAAGCGTAAGGACTTC
TTCATCCAGTTGCGCCGCGAGCCCAGCGAGAACTACGATACTTTGCTGGG
CTTTGGGATGAGCAGCCACAAGCACGCCAAGGCGCTGTGGAAGTCCTGCG
TGGAGCACCACAGCTTCTTCCGCCTAAAGCGACCACACCGCCTCTCACGC
TTCCTCAATATCAGTTTGGGTAGCAAGTTTTACTACTCTGGACGCACAGA
GCTACAGGCTGTGCAGGAGTCCAAACAGCGTGGTCGCATTCACAAGGTAT
TTGTGCGCTCGCCGAGCAAGCGGCTTCTGGGAGCCGCCGGCGGTGTGGGA
ACGTCAGGCTCCTCGGGCGGTACGCCTATGCAGCAGCACAGCGGCTCCGA
GAGCGCCAATTCCCACAACAACGGAAAGCCAGCCGGCGCAGGAACCATAC
TGACCATTACAAAGACAAGCCGCCCGCACGATAACAAGGTCACCTCCAAG
GAGGCCGATTCCATGCCGCGCAAGGCGTGGGAGCAGCAGAGCGACGAGTA
TGACATTCAGCTCGACGTCGGTTTTATTGAACAGTGCACCCGACGCTTCG
AGTCTGCATCCCCGTCGCCCATGCCGCCCGCCTACAGCTCCGGCCAGCAC
AGTCCAATTCTACTGCCAACAACCATCGCGGACGCCGTGGGTCATCAGCA
GCCGGAAAGCGGCAGCGACCTCATCACCATTCGTTTGCAGGCCGACGAGC
AGGGACGCTATGGTTTCAACGTGAAGGGTGGAGTGGATTTGAGCCTGCCC
GTTCAGGTGTCAAAAGTGGTACCCCATACGCCCGCTGATCGTTGCACTCC
GCGAGTCTGCGAGGGCGACGAGGTACTCATGATTAATGGCCGGGATGTGC
ACGGCCTGCGTCACGAGCAGGTGGTGGCCATGATTCGTGATTGCCGTCAT
CAAGCCAGCGGCGAATTGCTACTGACGGTGCGGCCCCAGCGCTCGGCCCC
TCTGCTCCTTGAGGAGGAGCCGTTGTACCAGTACGTCCCGGAGAGCGATG
AGATCGGATCACACTCTAATCTGCTCGATGGGGATGCTTTGTTTACCCAG
AGCCTGCTGCTGCTCAGCGATGGCTTGGCGTCTGGCGCCCTGTTGGCGCA
GTATGAGCTCATGTACAGGAAGAACCCGGATCTGGCCATTACTGAGGCTC
GGAAGCCGGCGAACGCGCCCAAAAACCGATACCGAGACATATCACCATAT
GACTGCACCCGGGTATCTCTGGTCAACTCGCTCACAGGCGACTACATCAA
CGCCAACTACGTAAACATGGAGATTCCCGGCGGAGCGGTAAACCGATATA
TTGCCACCCAGGGACCTCTGGCCAGCACCACGACGGACTTTTGGCGCATG
GTACAGCAAGAGAGCAGTCATCTCCTGGTGATGCTAACGACCGTAATGGA
GTCTGGTCGCCAGAAATGCCATCAGTATTGGCCGGTGACGGGTGAGGAGC
TTCAGCTGGCGGAGGGATTCTCGGTGCGATGCCTTAGCGAGAAACCGGAC
GAGACAGGTAGTTTTGTCTTCCGCGAGTTTGTTCTGAAGGACAAGCACGA
GCAGCGACACATCCACCACATGCAGTACTTGGCCTGGCCAGATCACTGTG
TGCCCTCCGATCCTAATCTTTTCCTAGAGTTTACGGAGCGGGTGCGTGCC
GCTCGAAACCGCACGCTCCTTCAGGAGATCGAGGAGAGTCTGAAGCAGGT
GCGCCTGATGGATGCCGATGCGGATGCCGACGAGAACGGCGGACTGATGC
GCGAGCGCAAGTGTGCGGCCAGCAACGGAGCCACTCCTGAGGACGAGACG
CCGGTCTCGACAAGCGTGCATCAGTGCATCAGTGCAGCCAATCCACCTGT
GATTGTCCACTGCTCGGCGGGAATAGGACGTACTGGAGTGCTCATACTGA
TGGACACTGCGCTGGCTTTGATGGAGGCTCGAGAACCGGTGTATCCGTTG
GACATTGTGCGCACCATGCGCGATCAGCGTGCCTGCATGGTGCAGAATGT
GAGCCAGTACCGCTTCGTGTGCGAGTGCATCTGCGCCGCCTACATGAAGA
TCTCACGCAGCAGTGCGGCCATTAACGACGACGAGGATGCAAGCTTTCTA
GACCAT
BO35169.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:01:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ptpmeg-RK | 2925 | CG1228-PK | 1..2922 | 17..2938 | 14610 | 100 | Plus |
Ptpmeg-RJ | 2925 | CG1228-PJ | 1..2922 | 17..2938 | 14610 | 100 | Plus |
Ptpmeg-RI | 2925 | CG1228-PI | 1..2922 | 17..2938 | 14610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:01:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ptpmeg-RK | 4079 | CG1228-RK | 631..3553 | 16..2938 | 14615 | 100 | Plus |
Ptpmeg-RJ | 4028 | CG1228-RJ | 580..3502 | 16..2938 | 14615 | 100 | Plus |
Ptpmeg-RI | 3596 | CG1228-RI | 459..3381 | 16..2938 | 14615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:01:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 352838..353687 | 513..1362 | 4250 | 100 | Plus |
3L | 28110227 | 3L | 353761..354446 | 1363..2048 | 3430 | 100 | Plus |
3L | 28110227 | 3L | 354500..355127 | 2049..2676 | 3140 | 100 | Plus |
3L | 28110227 | 3L | 355199..355376 | 2674..2851 | 890 | 100 | Plus |
3L | 28110227 | 3L | 351625..351778 | 16..169 | 770 | 100 | Plus |
3L | 28110227 | 3L | 352624..352771 | 365..512 | 725 | 99.3 | Plus |
3L | 28110227 | 3L | 352298..352407 | 168..277 | 550 | 100 | Plus |
3L | 28110227 | 3L | 352475..352568 | 277..370 | 470 | 100 | Plus |
3L | 28110227 | 3L | 355437..355524 | 2851..2938 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 15:01:37 has no hits.
BO35169.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-03-03 17:24:51 Download gff for
BO35169.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ptpmeg-RI | 466..3381 | 23..2940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:29:35 Download gff for
BO35169.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ptpmeg-RI | 466..3381 | 23..2940 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:29:35 Download gff for
BO35169.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 351632..351778 | 23..169 | 100 | -> | Plus |
3L | 352300..352407 | 170..277 | 100 | -> | Plus |
3L | 352476..352568 | 278..370 | 100 | -> | Plus |
3L | 352630..352771 | 371..512 | 100 | -> | Plus |
3L | 352838..353687 | 513..1362 | 100 | -> | Plus |
3L | 353761..354446 | 1363..2048 | 100 | -> | Plus |
3L | 354500..355124 | 2049..2673 | 100 | -> | Plus |
3L | 355199..355376 | 2674..2851 | 100 | -> | Plus |
3L | 355438..355524 | 2852..2940 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-03-03 17:24:51 Download gff for
BO35169.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 351632..351778 | 23..169 | 100 | -> | Plus |
arm_3L | 352300..352407 | 170..277 | 100 | -> | Plus |
arm_3L | 352476..352568 | 278..370 | 100 | -> | Plus |
arm_3L | 352630..352771 | 371..512 | 100 | -> | Plus |
arm_3L | 352838..353687 | 513..1362 | 100 | -> | Plus |
arm_3L | 353761..354446 | 1363..2048 | 100 | -> | Plus |
arm_3L | 354500..355124 | 2049..2673 | 100 | -> | Plus |
arm_3L | 355199..355376 | 2674..2851 | 100 | -> | Plus |
arm_3L | 355438..355524 | 2852..2940 | 97 | | Plus |
BO35169.pep Sequence
Translation from 16 to 2956
> BO35169.pep
MFERFRLNNLTRTFRLRGGGPELARDKKTPQRQQCVTVLFLDDITHTFRI
EKRAKGSELLDQVFQYLELSERDYFGLLFPQKPGDVVRWVDAQKQFKKQC
SSVSLDNDAVPLLEFRVKFFVSDPSRLQEEFTRYQFYLQIKRNILLGKLP
CSSNTQCLLASYTVQSELGDFNALEHQPGYLSGMQLLCDQTTEAERKVGE
LHKLHRGQLPADAEYNYLEHAKRLELYGIDLHRATDSNGKELQLGVSAVG
LLVFQHSLRVNTFSWSKMVKVSFKRKDFFIQLRREPSENYDTLLGFGMSS
HKHAKALWKSCVEHHSFFRLKRPHRLSRFLNISLGSKFYYSGRTELQAVQ
ESKQRGRIHKVFVRSPSKRLLGAAGGVGTSGSSGGTPMQQHSGSESANSH
NNGKPAGAGTILTITKTSRPHDNKVTSKEADSMPRKAWEQQSDEYDIQLD
VGFIEQCTRRFESASPSPMPPAYSSGQHSPILLPTTIADAVGHQQPESGS
DLITIRLQADEQGRYGFNVKGGVDLSLPVQVSKVVPHTPADRCTPRVCEG
DEVLMINGRDVHGLRHEQVVAMIRDCRHQASGELLLTVRPQRSAPLLLEE
EPLYQYVPESDEIGSHSNLLDGDALFTQSLLLLSDGLASGALLAQYELMY
RKNPDLAITEARKPANAPKNRYRDISPYDCTRVSLVNSLTGDYINANYVN
MEIPGGAVNRYIATQGPLASTTTDFWRMVQQESSHLLVMLTTVMESGRQK
CHQYWPVTGEELQLAEGFSVRCLSEKPDETGSFVFREFVLKDKHEQRHIH
HMQYLAWPDHCVPSDPNLFLEFTERVRAARNRTLLQEIEESLKQVRLMDA
DADADENGGLMRERKCAASNGATPEDETPVSTSVHQCISAANPPVIVHCS
AGIGRTGVLILMDTALALMEAREPVYPLDIVRTMRDQRACMVQNVSQYRF
VCECICAAYMKISRSSAAINDDEDASFLDH
BO35169.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:00:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ptpmeg-PK | 974 | CG1228-PK | 1..974 | 1..974 | 5090 | 100 | Plus |
Ptpmeg-PJ | 974 | CG1228-PJ | 1..974 | 1..974 | 5090 | 100 | Plus |
Ptpmeg-PI | 974 | CG1228-PI | 1..974 | 1..974 | 5090 | 100 | Plus |
Ptpmeg-PH | 974 | CG1228-PH | 1..974 | 1..974 | 5090 | 100 | Plus |
Ptpmeg-PG | 974 | CG1228-PG | 1..974 | 1..974 | 5090 | 100 | Plus |