Clone BO35171 Report

Search the DGRC for BO35171

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:351
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptAdar-RD
Protein status:BO35171.pep: Imported from assembly
Sequenced Size:1210

Clone Sequence Records

BO35171.complete Sequence

1210 bp assembled on 2013-12-04

GenBank Submission: KX799555

> BO35171.complete
GAAGTTATCAGTCGACATGTTAAACAGCGCTAATAACAATTCTCCCCAGC
ACCCGGTGAGTGCACCATCCGATATCAACATGAATGGCTATAACCGAAAA
TTGCCACAAAAACGTGGCTATGAGATGCCAAAATACTCTGATCCAAAAAA
GAAAATGTGCAAGGAGCGCATTCCCCAGCCGAAGAACACGGTGGCCATGC
TGAATGAGCTAAGACATGGACTGATTTACAAATTGGAGTCACAGACTGGT
CCGGTACACGCACCTCTATTCACGATATCCGTGGAGGTCGATGGACAGAA
ATACTTGGGCCAGGGCCGTAGTAAAAAAGTTGCACGCATCGAAGCAGCAG
CAACTGCACTGCGCAGCTTTATACAGTTTAAGGATGGAGCAGTTCTGTCG
CCTCTGAAGCCGGCGGGCAACTTGGACTTTACCAGCGATGAACATCTTGA
AAATGGTATTGAAAATTTGTCCAGTTCAAAAATGTTTGAGATCATTCAGA
CGATGTTGACTGAAAAGCTATCCAACCCTACCTCGCTTGAACAACCCACG
TTTTGCATGAGTCAGAATGTCAGCAAAAGTGCTATTACTGTTGACGGTCA
GAAGAAGGTTCCAGATAAGGGTCCTGTCATGCTCCTCTACGAATTATTTA
ATGACGTTAATTTCGAATGCATTAATATTGACGGCGCCCAGAACAATTGT
CGCTTCAAAATGACCGTCACAATCAACGAAAAGAAGTTCGATGGAACAGG
TCCTTCCAAAAAGACGGCGAAAAATGCGGCAGCTAAGGCGGCACTTGCTT
CGTTATGCAATATTTCCTACAGTCCAATGGTGGTGCCACAGAAGAACGTA
CCCCTGCCAATCGACGACAAGTCGTCATCGATGGAGTTGCCTCAGATACA
CGCGGATACGATTGGTCGGTTGGTCTTAGAAAAGTTCATGGAAGTAATCA
AGGGCCAGGAGGCTTACTCGCGTCGAAAGGTATTAGCGGGCATTGTAATG
ACTGAAAACATGAATTTTTGTGAAGCCAAAGTTATTTCAGTTTCGACGGG
CACCAAGTGTGTCAGCGGTGAGCATATGAGTGTGAACGGAGCTGTCCTAA
ATGATTCCCATGCTGAAATAGTCTCCAGGCGTTGTCTTCTCAAATATTTA
TATGCACAGCTGGACCTTCAGTGCAATCAGGGTATAGTTGTTGCAAGCTT
TCTAGACCAT

BO35171.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:41:23
Subject Length Description Subject Range Query Range Score Percent Strand
Adar-RD 1179 CG12598-PD 1..1176 17..1192 5880 100 Plus
Adar-RK 1179 CG12598-PK 1..1176 17..1192 5880 100 Plus
Adar-RN 2010 CG12598-PN 1..1165 17..1181 5825 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:41:25
Subject Length Description Subject Range Query Range Score Percent Strand
Adar-RD 2042 CG12598-RD 502..1678 16..1192 5885 100 Plus
Adar-RK 2073 CG12598-RK 551..1727 16..1192 5885 100 Plus
Adar-RN 6823 CG12598-RN 502..1667 16..1181 5830 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:41:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1780329..1780613 748..1032 1425 100 Plus
X 23542271 X 1779088..1779369 285..566 1410 100 Plus
X 23542271 X 1780062..1780246 567..751 925 100 Plus
X 23542271 X 1780675..1780836 1031..1192 810 100 Plus
X 23542271 X 1778814..1778962 140..288 745 100 Plus
X 23542271 X 1778612..1778699 53..140 440 100 Plus
X 23542271 X 1775702..1775738 16..52 185 100 Plus
Blast to na_te.dros performed on 2014-11-28 14:41:22 has no hits.

BO35171.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-12-04 10:00:46 Download gff for BO35171.complete
Subject Subject Range Query Range Percent Splice Strand
Adar-RK 557..1727 22..1194 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:20:21 Download gff for BO35171.complete
Subject Subject Range Query Range Percent Splice Strand
Adar-RK 557..1727 22..1194 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:20:21 Download gff for BO35171.complete
Subject Subject Range Query Range Percent Splice Strand
X 1780331..1780611 750..1030 100 -> Plus
X 1780675..1780836 1031..1194 98   Plus
X 1780062..1780244 567..749 100 -> Plus
X 1775708..1775738 22..52 100 -> Plus
X 1778612..1778699 53..140 100 -> Plus
X 1778815..1778960 141..286 100 -> Plus
X 1779090..1779369 287..566 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-12-04 10:00:46 Download gff for BO35171.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1672848..1672993 141..286 100 -> Plus
arm_X 1669741..1669771 22..52 100 -> Plus
arm_X 1672645..1672732 53..140 100 -> Plus
arm_X 1673123..1673402 287..566 100 -> Plus
arm_X 1674095..1674277 567..749 100 -> Plus
arm_X 1674364..1674644 750..1030 100 -> Plus
arm_X 1674708..1674869 1031..1194 98   Plus

BO35171.pep Sequence

Translation from 16 to 1210

> BO35171.pep
MLNSANNNSPQHPVSAPSDINMNGYNRKLPQKRGYEMPKYSDPKKKMCKE
RIPQPKNTVAMLNELRHGLIYKLESQTGPVHAPLFTISVEVDGQKYLGQG
RSKKVARIEAAATALRSFIQFKDGAVLSPLKPAGNLDFTSDEHLENGIEN
LSSSKMFEIIQTMLTEKLSNPTSLEQPTFCMSQNVSKSAITVDGQKKVPD
KGPVMLLYELFNDVNFECINIDGAQNNCRFKMTVTINEKKFDGTGPSKKT
AKNAAAKAALASLCNISYSPMVVPQKNVPLPIDDKSSSMELPQIHADTIG
RLVLEKFMEVIKGQEAYSRRKVLAGIVMTENMNFCEAKVISVSTGTKCVS
GEHMSVNGAVLNDSHAEIVSRRCLLKYLYAQLDLQCNQGIVVASFLDH

BO35171.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:49:19
Subject Length Description Subject Range Query Range Score Percent Strand
Adar-PD 392 CG12598-PD 1..392 1..392 2016 100 Plus
Adar-PK 392 CG12598-PK 1..392 1..392 2016 100 Plus
Adar-PN 669 CG12598-PN 1..394 1..394 1999 98.7 Plus
Adar-PJ 389 CG12598-PJ 8..389 11..392 1961 99.7 Plus
Adar-PH 665 CG12598-PH 9..390 13..394 1934 98.7 Plus