BO35172.complete Sequence
1855 bp assembled on 2014-07-18
GenBank Submission: KX795415
> BO35172.complete
GAAGTTATCAGTCGACATGGGATCGCGTATCAAAAATGACGTGAAGAAGC
TCTTCGAGTTCTGGTGCGAGGTCACGCCGACGCCGGGATTAGAGAGGGGC
ACGAGTTCCAGGAGCGGCGGGCCAGCTGTTCCCGCCGGCGTGATCGTGGA
GAGCTTCCCCGAGGGATTCCGCGACCAGGAGGTGCTCACCGGCATCCCAT
CGTTTGCCTTTCCCTGCGACACAACAAGCACCTCGGTGCAGACATATTCC
TTTGTGCACACCACTGGCGATTCGAAATGGCGCTTCGGCTTCTGTCGACA
GGATCCGCGGACGAACACGGCCATGGTGCTGATAACCTACCTGCCGTGGC
ACGACACCTTCCTAAAGCTGCTGCCCGTGCTCGCCGAGCTGAGGCGGACG
GATCCCAATGGGTTTCGCACCTTCCTCTCCGAGGCCTACAACCAGGGTAT
CCCGGATTGTGGCGGCAGCCTTAAAGTCTATTACAGCGCAGGCCAGAGTC
ACTTCACCTTCGAACGCCCACTGCAGTTCCAGTTGCCCAGCATGCCAGAA
AATCACAACTTGAATTTGTACTACAACTTCGTGGAGCCCAAGGAGATGAT
TGCCGTGTTCGCTGCGATGCTGGCCGAGCGTCGAATAATCTTCACGTCGA
GACACCTGGACAGGCTATCCTCATGCATCCAGGCGGCCAACGCATTCCTA
TATCCCATGGTCTGGCAGCACATCTTTATACCCGTGCTGCCGTGGGAGTT
CAAAGACTACCTGGGTGCGCCCATGCCATATCTGATTGGTGTGCCAGAAC
CAGTGCTCGAAACCGTCACCAGTGATGAGCTGGGTGAAGTTGTGATTCTG
AACTGTGATACGAAAATATTCGAAAGCCCATTCGACGATGTGCACAATCT
GCCAACGGAGATTGTGTCACAGCTGAAGAAGCATCTGAATCACACACATG
ACCACATCGGCGACCGCATCTCGAAGATCTTCCTAAACGCACTGGTGCAG
CTCATCGGTGGCTACCGGGACGCTGTGGAGTACCACGAGAACAGCAAGAC
GTTTAATTCCCAAAAATTCATTGAATCTCGGCCGGCGCACCTGCGCCCCT
TTCTTGCCAAAATGATGGATCTACAGATCTTTGCGCAGTTCATTGACGAT
CGCCTAACGATGCTCAACAGCGGACTCGGCTTCTCGGACGAGTTCGAGCT
GGAGACGGTGCGCTATGCGGAAAAGAAGAAGCGCGGTCGAAACTACGCCA
TCATGAAGAACCTTAAGGACAAGGTTAAGGAGGGCTCGCGGGGCATGAAG
ACCGCCTATAAGGGATTCAAGACAAAGCTGCGCGAGAACGGAAACCAGTT
TGGTGGCACGCACTTCCACTTTGGACTTGGCTCCCCGAATCATTCGGATC
GTCCTGACGGCACCAGCGGAGGATACGTTCGTGGTGGCAAGGCCATCGGG
GCTGCACACCACTCGGCGCCCAGTTCTCCAGTGACCAGCAAGCGTCTTGA
TGGAATTGCCTCCGTCACGGGAAGCAGCGGCAGCGGTGGATCCGGCGCCA
GGGAGCCGCGGGAGTTCCTGCGACGCGGTCCCGTCCCGCTGGCCATGTCT
AGCTCGAGCAGCCACATTCAGCCGAACGGCCATGCGTACGGTGCGAGTGC
TGGTGCTCATTATGGTCATCATCTCGCTGCGTCTCCTGCTGTTAGCTCGG
CGAGCTCGCTCTGCTCATCTTCGGAGATGAACCTGTCGCAGGAACTGCAG
AACCATCCGCTTTTCAAGACGCCGGCAGTGGACCGCAGCGTAAGTAATCT
GGTGCGGGCGTACGAGCTTCGGCTACAGCAGCTCCAGGCAAGCTTTCTAG
ACCAT
BO35172.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:14:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18659-RF | 1824 | CG18659-PF | 1..1821 | 17..1837 | 9105 | 100 | Plus |
| CG18659-RC | 2694 | CG18659-PC | 1..1773 | 17..1789 | 8865 | 100 | Plus |
| CG18659-RI | 2721 | CG18659-PI | 1..1257 | 17..1273 | 6285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:14:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18659-RF | 3816 | CG18659-RF | 390..2215 | 12..1837 | 9115 | 99.9 | Plus |
| CG18659-RC | 3486 | CG18659-RC | 390..2167 | 12..1789 | 8875 | 99.9 | Plus |
| CG18659-RI | 3513 | CG18659-RI | 390..1651 | 12..1273 | 6295 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:14:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9125503..9126068 | 1837..1272 | 2830 | 100 | Minus |
| 2R | 25286936 | 2R | 9127417..9127877 | 1275..815 | 2305 | 100 | Minus |
| 2R | 25286936 | 2R | 9128371..9128643 | 499..227 | 1365 | 100 | Minus |
| 2R | 25286936 | 2R | 9127935..9128197 | 816..554 | 1315 | 100 | Minus |
| 2R | 25286936 | 2R | 9131164..9131358 | 228..34 | 975 | 100 | Minus |
| 2R | 25286936 | 2R | 9128257..9128310 | 553..500 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 15:14:24 has no hits.
BO35172.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-18 11:09:26 Download gff for
BO35172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18659-RF | 395..2215 | 17..1839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:34:25 Download gff for
BO35172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18659-RF | 395..2215 | 17..1839 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:34:25 Download gff for
BO35172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9127937..9128197 | 554..814 | 100 | <- | Minus |
| 2R | 9128257..9128310 | 500..553 | 100 | <- | Minus |
| 2R | 9128371..9128641 | 229..499 | 100 | <- | Minus |
| 2R | 9131164..9131358 | 34..228 | 100 | <- | Minus |
| 2R | 9131483..9131499 | 17..33 | 100 | | Minus |
| 2R | 9125501..9126066 | 1274..1839 | 99 | <- | Minus |
| 2R | 9127419..9127877 | 815..1273 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-18 11:09:26 Download gff for
BO35172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5013006..5013571 | 1274..1839 | 99 | <- | Minus |
| arm_2R | 5014924..5015382 | 815..1273 | 100 | <- | Minus |
| arm_2R | 5015442..5015702 | 554..814 | 100 | <- | Minus |
| arm_2R | 5015762..5015815 | 500..553 | 100 | <- | Minus |
| arm_2R | 5015876..5016146 | 229..499 | 100 | <- | Minus |
| arm_2R | 5018669..5018863 | 34..228 | 100 | <- | Minus |
| arm_2R | 5018988..5019004 | 17..33 | 100 | | Minus |
BO35172.pep Sequence
Translation from 16 to 1855
> BO35172.pep
MGSRIKNDVKKLFEFWCEVTPTPGLERGTSSRSGGPAVPAGVIVESFPEG
FRDQEVLTGIPSFAFPCDTTSTSVQTYSFVHTTGDSKWRFGFCRQDPRTN
TAMVLITYLPWHDTFLKLLPVLAELRRTDPNGFRTFLSEAYNQGIPDCGG
SLKVYYSAGQSHFTFERPLQFQLPSMPENHNLNLYYNFVEPKEMIAVFAA
MLAERRIIFTSRHLDRLSSCIQAANAFLYPMVWQHIFIPVLPWEFKDYLG
APMPYLIGVPEPVLETVTSDELGEVVILNCDTKIFESPFDDVHNLPTEIV
SQLKKHLNHTHDHIGDRISKIFLNALVQLIGGYRDAVEYHENSKTFNSQK
FIESRPAHLRPFLAKMMDLQIFAQFIDDRLTMLNSGLGFSDEFELETVRY
AEKKKRGRNYAIMKNLKDKVKEGSRGMKTAYKGFKTKLRENGNQFGGTHF
HFGLGSPNHSDRPDGTSGGYVRGGKAIGAAHHSAPSSPVTSKRLDGIASV
TGSSGSGGSGAREPREFLRRGPVPLAMSSSSSHIQPNGHAYGASAGAHYG
HHLAASPAVSSASSLCSSSEMNLSQELQNHPLFKTPAVDRSVSNLVRAYE
LRLQQLQASFLDH
BO35172.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:10:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18659-PF | 607 | CG18659-PF | 1..607 | 1..607 | 3205 | 100 | Plus |
| CG18659-PC | 897 | CG18659-PC | 1..592 | 1..592 | 3131 | 99.8 | Plus |
| CG18659-PI | 906 | CG18659-PI | 1..603 | 1..592 | 3109 | 98 | Plus |
| CG18659-PA | 908 | CG18659-PA | 1..603 | 1..592 | 3109 | 98 | Plus |
| CG18659-PD | 749 | CG18659-PD | 1..602 | 1..591 | 3108 | 98.2 | Plus |
