BO35176.complete Sequence
784 bp assembled on 2013-12-04
GenBank Submission: KX796728
> BO35176.complete
GAAGTTATCAGTCGACATGTCGTTACCGGCTGAAGAGGAGGATTTGGCGG
ACACTGTCGCCAAGTACGATTCCATCGAATTGAAGAGCATACAGGACCTG
GAAACCTGCGAGCAGCAACAACTACTGCAGTACGTCGAAAAGCTGCACGG
GATTATCCGCAAATACGACACCAAACTGGCGTCCTATAAACAAAAACTCC
TACACTACGTAAGCCGGGAAGAAAAGGTTTCGTGTGACAAAGCCAGCCAA
GCAACTGAATCGGAATTACAAGAATGCCAGTATTCCATGGAAAACGATGA
GGATACTAACAAAAAAGACCAGCCCAACGATTTATCGGCGACGGACGCCT
TCAGTTTTGTGGACGAAATGAGGCAGGCAGCCAAGCACGCCGAAAACCTG
AACAACTTCGTTTACGAGCACACCTCTGGCATGTACTACGATCCCAAGAC
GGGATACTACTATAACGCGGAGTACGGGCTGTACTACGATGGTAACAACG
GCTGCTACTACAGCTATGATCACGCCAAAGACTCGTACGAGTTCCACTCT
CAGGCCCAGGTACAGCCTTTGAGCGACTGCGCCTATAGTAGTCTTTTAGC
GGGGTTTCACAAACTCCGCATAGACCGAATGCGTAGCAATGCATTAGGTA
AGAGTCAAGGTCCAGAATGTGCGATAAAAACGCGGATTTCTTTTCTTAAC
TTGGTTGCAGGCGAACGATGCGGCCAAACCGGAATCGGAGGACGAGGATT
TGGAGGTGCAGTTCGAGCAAGCTTTCTAGACCAT
BO35176.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:42:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8079-RD | 753 | CG8079-PD | 1..750 | 17..766 | 3750 | 100 | Plus |
CG8079-RE | 690 | CG8079-PE | 1..632 | 17..648 | 3160 | 100 | Plus |
CG8079-RC | 1506 | CG8079-PC | 1..631 | 17..647 | 3155 | 100 | Plus |
CG8079-RE | 690 | CG8079-PE | 630..687 | 709..766 | 290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:42:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8079-RD | 2159 | CG8079-RD | 86..835 | 17..766 | 3750 | 100 | Plus |
CG8079-RE | 2096 | CG8079-RE | 86..717 | 17..648 | 3160 | 100 | Plus |
CG8079-RC | 2838 | CG8079-RC | 86..716 | 17..647 | 3155 | 100 | Plus |
CG8079-RE | 2096 | CG8079-RE | 715..772 | 709..766 | 290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:41:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15221896..15222099 | 563..766 | 1020 | 100 | Plus |
2R | 25286936 | 2R | 15218464..15218657 | 17..210 | 970 | 100 | Plus |
2R | 25286936 | 2R | 15221429..15221566 | 333..470 | 690 | 100 | Plus |
2R | 25286936 | 2R | 15218713..15218836 | 209..332 | 620 | 100 | Plus |
2R | 25286936 | 2R | 15221727..15221823 | 469..565 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:42:00 has no hits.
BO35176.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-12-04 10:00:59 Download gff for
BO35176.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8079-RD | 86..835 | 17..768 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:20:38 Download gff for
BO35176.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8079-RD | 86..835 | 17..768 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:20:38 Download gff for
BO35176.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15218464..15218655 | 17..208 | 100 | -> | Plus |
2R | 15218713..15218836 | 209..332 | 100 | -> | Plus |
2R | 15221429..15221565 | 333..469 | 100 | -> | Plus |
2R | 15221728..15221823 | 470..565 | 100 | -> | Plus |
2R | 15221899..15222099 | 566..768 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-12-04 10:00:59 Download gff for
BO35176.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11105969..11106160 | 17..208 | 100 | -> | Plus |
arm_2R | 11106218..11106341 | 209..332 | 100 | -> | Plus |
arm_2R | 11108934..11109070 | 333..469 | 100 | -> | Plus |
arm_2R | 11109233..11109328 | 470..565 | 100 | -> | Plus |
arm_2R | 11109404..11109604 | 566..768 | 99 | | Plus |
BO35176.pep Sequence
Translation from 16 to 784
> BO35176.pep
MSLPAEEEDLADTVAKYDSIELKSIQDLETCEQQQLLQYVEKLHGIIRKY
DTKLASYKQKLLHYVSREEKVSCDKASQATESELQECQYSMENDEDTNKK
DQPNDLSATDAFSFVDEMRQAAKHAENLNNFVYEHTSGMYYDPKTGYYYN
AEYGLYYDGNNGCYYSYDHAKDSYEFHSQAQVQPLSDCAYSSLLAGFHKL
RIDRMRSNALGKSQGPECAIKTRISFLNLVAGERCGQTGIGGRGFGGAVR
ASFLDH
BO35176.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:49:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8079-PD | 250 | CG8079-PD | 1..250 | 1..250 | 1323 | 100 | Plus |
CG8079-PE | 229 | CG8079-PE | 1..229 | 1..250 | 1185 | 91.6 | Plus |
CG8079-PC | 501 | CG8079-PC | 1..210 | 1..210 | 1112 | 100 | Plus |
CG8079-PA | 601 | CG8079-PA | 1..183 | 1..183 | 974 | 100 | Plus |
CG8079-PB | 599 | CG8079-PB | 1..181 | 1..181 | 965 | 100 | Plus |