Clone BO35176 Report

Search the DGRC for BO35176

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:351
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptCG8079-RD
Protein status:BO35176.pep: Imported from assembly
Sequenced Size:784

Clone Sequence Records

BO35176.complete Sequence

784 bp assembled on 2013-12-04

GenBank Submission: KX796728

> BO35176.complete
GAAGTTATCAGTCGACATGTCGTTACCGGCTGAAGAGGAGGATTTGGCGG
ACACTGTCGCCAAGTACGATTCCATCGAATTGAAGAGCATACAGGACCTG
GAAACCTGCGAGCAGCAACAACTACTGCAGTACGTCGAAAAGCTGCACGG
GATTATCCGCAAATACGACACCAAACTGGCGTCCTATAAACAAAAACTCC
TACACTACGTAAGCCGGGAAGAAAAGGTTTCGTGTGACAAAGCCAGCCAA
GCAACTGAATCGGAATTACAAGAATGCCAGTATTCCATGGAAAACGATGA
GGATACTAACAAAAAAGACCAGCCCAACGATTTATCGGCGACGGACGCCT
TCAGTTTTGTGGACGAAATGAGGCAGGCAGCCAAGCACGCCGAAAACCTG
AACAACTTCGTTTACGAGCACACCTCTGGCATGTACTACGATCCCAAGAC
GGGATACTACTATAACGCGGAGTACGGGCTGTACTACGATGGTAACAACG
GCTGCTACTACAGCTATGATCACGCCAAAGACTCGTACGAGTTCCACTCT
CAGGCCCAGGTACAGCCTTTGAGCGACTGCGCCTATAGTAGTCTTTTAGC
GGGGTTTCACAAACTCCGCATAGACCGAATGCGTAGCAATGCATTAGGTA
AGAGTCAAGGTCCAGAATGTGCGATAAAAACGCGGATTTCTTTTCTTAAC
TTGGTTGCAGGCGAACGATGCGGCCAAACCGGAATCGGAGGACGAGGATT
TGGAGGTGCAGTTCGAGCAAGCTTTCTAGACCAT

BO35176.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:42:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG8079-RD 753 CG8079-PD 1..750 17..766 3750 100 Plus
CG8079-RE 690 CG8079-PE 1..632 17..648 3160 100 Plus
CG8079-RC 1506 CG8079-PC 1..631 17..647 3155 100 Plus
CG8079-RE 690 CG8079-PE 630..687 709..766 290 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:42:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG8079-RD 2159 CG8079-RD 86..835 17..766 3750 100 Plus
CG8079-RE 2096 CG8079-RE 86..717 17..648 3160 100 Plus
CG8079-RC 2838 CG8079-RC 86..716 17..647 3155 100 Plus
CG8079-RE 2096 CG8079-RE 715..772 709..766 290 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:41:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15221896..15222099 563..766 1020 100 Plus
2R 25286936 2R 15218464..15218657 17..210 970 100 Plus
2R 25286936 2R 15221429..15221566 333..470 690 100 Plus
2R 25286936 2R 15218713..15218836 209..332 620 100 Plus
2R 25286936 2R 15221727..15221823 469..565 485 100 Plus
Blast to na_te.dros performed on 2014-11-28 14:42:00 has no hits.

BO35176.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-12-04 10:00:59 Download gff for BO35176.complete
Subject Subject Range Query Range Percent Splice Strand
CG8079-RD 86..835 17..768 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:20:38 Download gff for BO35176.complete
Subject Subject Range Query Range Percent Splice Strand
CG8079-RD 86..835 17..768 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:20:38 Download gff for BO35176.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15218464..15218655 17..208 100 -> Plus
2R 15218713..15218836 209..332 100 -> Plus
2R 15221429..15221565 333..469 100 -> Plus
2R 15221728..15221823 470..565 100 -> Plus
2R 15221899..15222099 566..768 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-12-04 10:00:59 Download gff for BO35176.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11105969..11106160 17..208 100 -> Plus
arm_2R 11106218..11106341 209..332 100 -> Plus
arm_2R 11108934..11109070 333..469 100 -> Plus
arm_2R 11109233..11109328 470..565 100 -> Plus
arm_2R 11109404..11109604 566..768 99   Plus

BO35176.pep Sequence

Translation from 16 to 784

> BO35176.pep
MSLPAEEEDLADTVAKYDSIELKSIQDLETCEQQQLLQYVEKLHGIIRKY
DTKLASYKQKLLHYVSREEKVSCDKASQATESELQECQYSMENDEDTNKK
DQPNDLSATDAFSFVDEMRQAAKHAENLNNFVYEHTSGMYYDPKTGYYYN
AEYGLYYDGNNGCYYSYDHAKDSYEFHSQAQVQPLSDCAYSSLLAGFHKL
RIDRMRSNALGKSQGPECAIKTRISFLNLVAGERCGQTGIGGRGFGGAVR
ASFLDH

BO35176.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:49:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG8079-PD 250 CG8079-PD 1..250 1..250 1323 100 Plus
CG8079-PE 229 CG8079-PE 1..229 1..250 1185 91.6 Plus
CG8079-PC 501 CG8079-PC 1..210 1..210 1112 100 Plus
CG8079-PA 601 CG8079-PA 1..183 1..183 974 100 Plus
CG8079-PB 599 CG8079-PB 1..181 1..181 965 100 Plus