BO35182.complete Sequence
1789 bp assembled on 2014-03-03
GenBank Submission: KX796979
> BO35182.complete
GAAGTTATCAGTCGACATGTACAACCTTATCAAGGGCTCCTTGGCAACAT
ACTGCTGCCTGTGCCTGCTACTGATATTGATTGACCCAGCGGAATCGGGA
CAACTGTCAACGAGATTCAACGTGAGCTTCGCCCAGCTGGATTCCTGCGA
AACCTACTCCGTTCCGAATACGGGCTATGGCTACCGGAGGTTCTACATGC
TGCGCGAGCTGAGCAACAACAACAGGAAGGCCGGAGAGCGGCTGCACTTG
AAATTCTACGTCCTGACCGCCATGGATGCGCACATCCTGCTCTCGGTGAC
GAATCACCCGCGCCCAAATGATCGCGTTTACGAGATCGTGATAGGAGCCG
GCGGAAATACGTTTTCCGCAATCCGGAATGCTATGGGAATGAGGCGGGTG
GCCACGAATCAAGAGCCGAACTTGGTATCGCTGTACGACCCGACGCCAAT
TGAGATTGTCCAAAACCAGAATGGCGAGCTGTTTGTTTACATACCCGGCT
TCAAGAAGGAGCCCCTGCTGCAGTTCATCGATGAAGCACCGCTGGTCATC
AACTATCTGAGTTTCAGCTCCTTTGGTTCCAATACGGCGCGGTGGTTTTA
CGACTGTGGCTTCGATGGTTATGGGTCGGAAATTGCACCGATAGTGAAGG
AGGAAACGAAGACGGAAAAACTGCTAAGCCATCTGAATATCCAGGCGGAA
AATGCAAGCATGCCGGCTAATCTCAGCTCCATATCGTTCCACTTCCAAAC
GCGCTCCCTCGCCTACGAGCAAACCAGTTCCTTGCTTCAGACCCGCATGC
ACATGATGATGCACTGGAGGGATAGTCGTCTTGTCTGGAAACCCGAGGAC
TTCGGCTCGCTGGAATCTTTCGAACATCCTGACCTTCGTATATGGAAGCC
GCATATGAACGTCCTCAACGGCGCCCTGCAATCCATGGGTCAGGTCCTCC
AATCCTATGAGCTGATGGTCTACGCCAACGGAAGCATCACCCTGTACGCT
CAAAACCTCCAGCTGGCCAGTTGGTGTGTGGACAGTGCCCGAAACTGGCC
AAGCGAGCGAGTGACTTGCGACATCGAGCTGGGTCTCAATGGCCAGGAGG
GGCAGGAGAATGTGGCGCTAATCTACGATGATCAGCGCAAGCCGATTGCG
CCCAATGAGCACGTGAACACGCCATCCGGCTGGTCGTTCACGCAAATGTC
CGTGGTGCTGGTGGAGAACGATTCGCAAAGGCGATACAACCCCAAGGGAA
TGATGCAGAAAATGACCGGCGATGTGGCAATTGAGTTCACGCTGCAAAGG
AATCGGAGCTTCTACATGACCGTCTTCTATTTGCCGTTGATTGCCTGCCA
GATGTTCCTGATTTTGTCCTTTGTACTGCGTTCTACTCGTAGGAGTTCCC
TCATTCTCATCGCCTTGCTGATTGCCGCCTGGGGTTTAATGTACATGACG
CGCTACGCCTCTCCGCATTATGTGCCGCCCATGATGACTGCATATAAAGT
CATCATGATGACCACCACCTATTGCTACATTCTGCACATCTGCATTATAT
GGCTGGATCTATATCCACCCAGATCGAAGGCTCCTGGCTGGCTGGTTAGG
GTGATTAACTCCAATGTTCTGCGATGCATTCTGGGATTGAGATTTTCGGA
TTCTACCGACTATTGCGACATTCAGGAGAATCCCTGGCACCATATGGCCA
AGATCCTGAACAACCTGAGTTCAATCTTGGTCATTATAACCTTTGCCATC
GTAGATATTACGAGTGGGTTTGCAAGCTTTCTAGACCAT
BO35182.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:01:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NtR-RA | 1758 | CG6698-PA | 1..1755 | 17..1771 | 8775 | 100 | Plus |
| NtR-RB | 1737 | CG6698-PB | 1..1734 | 17..1771 | 8425 | 98.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:01:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NtR-RA | 1876 | CG6698-RA | 48..1802 | 17..1771 | 8775 | 100 | Plus |
| NtR-RB | 1855 | CG6698-RB | 48..1781 | 17..1771 | 8425 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:01:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22128953..22129485 | 811..1343 | 2665 | 100 | Plus |
| 2R | 25286936 | 2R | 22127855..22128176 | 17..338 | 1610 | 100 | Plus |
| 2R | 25286936 | 2R | 22128693..22128881 | 623..811 | 945 | 100 | Plus |
| 2R | 25286936 | 2R | 22129764..22129930 | 1485..1651 | 835 | 100 | Plus |
| 2R | 25286936 | 2R | 22128473..22128626 | 471..624 | 770 | 100 | Plus |
| 2R | 25286936 | 2R | 22129550..22129691 | 1343..1484 | 710 | 100 | Plus |
| 2R | 25286936 | 2R | 22128281..22128413 | 338..470 | 665 | 100 | Plus |
| 2R | 25286936 | 2R | 22129991..22130110 | 1652..1771 | 600 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 15:01:41 has no hits.
BO35182.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-03-03 17:24:53 Download gff for
BO35182.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NtR-RA | 48..1802 | 17..1773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:29:38 Download gff for
BO35182.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NtR-RA | 48..1802 | 17..1773 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:29:38 Download gff for
BO35182.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22129991..22130110 | 1652..1773 | 98 | | Plus |
| 2R | 22127855..22128176 | 17..338 | 100 | -> | Plus |
| 2R | 22128282..22128413 | 339..470 | 100 | -> | Plus |
| 2R | 22128473..22128625 | 471..623 | 100 | -> | Plus |
| 2R | 22128694..22128881 | 624..811 | 100 | -> | Plus |
| 2R | 22128954..22129485 | 812..1343 | 100 | -> | Plus |
| 2R | 22129551..22129691 | 1344..1484 | 100 | -> | Plus |
| 2R | 22129764..22129930 | 1485..1651 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-03-03 17:24:53 Download gff for
BO35182.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18015360..18015681 | 17..338 | 100 | -> | Plus |
| arm_2R | 18015787..18015918 | 339..470 | 100 | -> | Plus |
| arm_2R | 18015978..18016130 | 471..623 | 100 | -> | Plus |
| arm_2R | 18016199..18016386 | 624..811 | 100 | -> | Plus |
| arm_2R | 18016459..18016990 | 812..1343 | 100 | -> | Plus |
| arm_2R | 18017056..18017196 | 1344..1484 | 100 | -> | Plus |
| arm_2R | 18017269..18017435 | 1485..1651 | 100 | -> | Plus |
| arm_2R | 18017496..18017615 | 1652..1773 | 98 | | Plus |
BO35182.pep Sequence
Translation from 16 to 1789
> BO35182.pep
MYNLIKGSLATYCCLCLLLILIDPAESGQLSTRFNVSFAQLDSCETYSVP
NTGYGYRRFYMLRELSNNNRKAGERLHLKFYVLTAMDAHILLSVTNHPRP
NDRVYEIVIGAGGNTFSAIRNAMGMRRVATNQEPNLVSLYDPTPIEIVQN
QNGELFVYIPGFKKEPLLQFIDEAPLVINYLSFSSFGSNTARWFYDCGFD
GYGSEIAPIVKEETKTEKLLSHLNIQAENASMPANLSSISFHFQTRSLAY
EQTSSLLQTRMHMMMHWRDSRLVWKPEDFGSLESFEHPDLRIWKPHMNVL
NGALQSMGQVLQSYELMVYANGSITLYAQNLQLASWCVDSARNWPSERVT
CDIELGLNGQEGQENVALIYDDQRKPIAPNEHVNTPSGWSFTQMSVVLVE
NDSQRRYNPKGMMQKMTGDVAIEFTLQRNRSFYMTVFYLPLIACQMFLIL
SFVLRSTRRSSLILIALLIAAWGLMYMTRYASPHYVPPMMTAYKVIMMTT
TYCYILHICIIWLDLYPPRSKAPGWLVRVINSNVLRCILGLRFSDSTDYC
DIQENPWHHMAKILNNLSSILVIITFAIVDITSGFASFLDH
BO35182.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:01:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NtR-PA | 585 | CG6698-PA | 1..585 | 1..585 | 3085 | 100 | Plus |
| NtR-PB | 578 | CG6698-PB | 1..578 | 1..585 | 3033 | 98.8 | Plus |
