BO35187.complete Sequence
850 bp assembled on 2013-12-04
GenBank Submission: KX794924
> BO35187.complete
GAAGTTATCAGTCGACATGAAGGTTTTTGCTGTCTTGGTCTTGGCAATTG
CCACAGTTTCTGCTGATATCCTGCGCCAGGACACTCCAGTACATCCCCGT
GATAGCTCAGCTGTTCCGTCCATAGATGGTCGCATTACCAATGGAAACAA
GGCAGCTGCTAACCAGTTTCCCTACCAGGTGGGACTCAGTTTTAAAAGCT
CGGCTGGCAGTTGGTGGTGCGGTGGTTCAATAATAGCGAATACATGGGTA
CTAACTGCTGCTCATTGCACCAAAGGAGCCTCTTCCGTGACCATCTACTA
TGGGTCCACCGTTCGCACTAGTGCCAAACTGAAGAAAAAGGTCTCCAGCT
CCAAGTTTGTGCAGCATGCCGGCTACAATGCGGCTACTTTGCGCAACGAC
ATCTCCCTGATCAAGACTCCATCCGTCACTTTTACGGTTTCCATAAATAA
GATTGCCCTGCCCGCCATCGCCAGCAGCTACTCCACCTACGCCGGACAGA
CTGCAGTGGCTTCCGGATGGGGCAGGACCTCCGATTCCAGCATTGCCGTC
GCCACGAACCTTCAATACGCACAATTTCAGGTCATTACCAATGCTGTGTG
TCAGAAGACCTTTGGGTCATCTGTGGTCACCAGTGGAGTTATCTGCGTGG
AGTCCATCAACAAGAAGTCGACCTGTCAGGGCGATTCTGGCGGTCCGTTG
GCTTTGAACAATAGACTAATTGGTGTGACCTCGTTTGTGTCCTCCAAGGG
ATGTGAGAAAAATGCGCCTGCTGGTTTCACCCGCGTCACCAGCTATCTGG
ATTGGATCAAGAACCAGTCCGGTGTGTTTTATGCAAGCTTTCTAGACCAT
BO35187.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:42:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10477-RB | 819 | CG10477-PB | 1..816 | 17..832 | 4080 | 100 | Plus |
| CG10477-RA | 819 | CG10477-PA | 1..816 | 17..832 | 4080 | 100 | Plus |
| yip7-RA | 813 | CG6457-PA | 112..506 | 128..522 | 475 | 74.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:42:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10477-RB | 1039 | CG10477-RB | 7..822 | 17..832 | 4080 | 100 | Plus |
| CG10477-RA | 1361 | CG10477-RA | 7..822 | 17..832 | 4080 | 100 | Plus |
| yip7-RA | 904 | CG6457-RA | 139..533 | 128..522 | 475 | 74.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:42:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6033738..6034294 | 832..276 | 2785 | 100 | Minus |
| 3L | 28110227 | 3L | 6034346..6034605 | 276..17 | 1300 | 100 | Minus |
| 3L | 28110227 | 3L | 6035674..6035804 | 392..522 | 265 | 80.2 | Plus |
| 3L | 28110227 | 3L | 6035354..6035497 | 128..271 | 240 | 77.8 | Plus |
| 3L | 28110227 | 3L | 6050888..6051030 | 128..270 | 220 | 76.9 | Plus |
Blast to na_te.dros performed 2014-11-28 14:42:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Penelope | 4158 | Dvir\Penelope DV49102 4158bp Derived from U49102 (Rel. 69, Last updated, Version 4). | 1007..1052 | 648..603 | 113 | 71.7 | Minus |
| Penelope | 804 | Penelope 804bp Derived from AF418572 (AF418572) (Rel. 70, Last updated, Version 3). | 562..607 | 648..603 | 113 | 71.7 | Minus |
BO35187.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-12-04 10:01:04 Download gff for
BO35187.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10477-RA | 7..822 | 17..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:20:42 Download gff for
BO35187.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10477-RA | 7..822 | 17..834 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:20:42 Download gff for
BO35187.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6033734..6034293 | 277..834 | 99 | <- | Minus |
| 3L | 6034346..6034605 | 17..276 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-12-04 10:01:04 Download gff for
BO35187.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6026834..6027393 | 277..834 | 99 | <- | Minus |
| arm_3L | 6027446..6027705 | 17..276 | 100 | | Minus |
BO35187.pep Sequence
Translation from 16 to 850
> BO35187.pep
MKVFAVLVLAIATVSADILRQDTPVHPRDSSAVPSIDGRITNGNKAAANQ
FPYQVGLSFKSSAGSWWCGGSIIANTWVLTAAHCTKGASSVTIYYGSTVR
TSAKLKKKVSSSKFVQHAGYNAATLRNDISLIKTPSVTFTVSINKIALPA
IASSYSTYAGQTAVASGWGRTSDSSIAVATNLQYAQFQVITNAVCQKTFG
SSVVTSGVICVESINKKSTCQGDSGGPLALNNRLIGVTSFVSSKGCEKNA
PAGFTRVTSYLDWIKNQSGVFYASFLDH
BO35187.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:49:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10477-PB | 272 | CG10477-PB | 1..272 | 1..272 | 1385 | 100 | Plus |
| CG10477-PA | 272 | CG10477-PA | 1..272 | 1..272 | 1385 | 100 | Plus |
| Jon65Aiii-PA | 274 | CG6483-PA | 1..274 | 1..272 | 972 | 67.5 | Plus |
| yip7-PA | 270 | CG6457-PA | 1..270 | 1..270 | 950 | 66.7 | Plus |
| Jon65Aiv-PA | 271 | CG6467-PA | 4..271 | 6..270 | 767 | 56 | Plus |
