BO35190.complete Sequence
1939 bp assembled on 2014-03-03
GenBank Submission: KX794527
> BO35190.complete
GAAGTTATCAGTCGACATGGACTCGGCGGAATCCCCCACCAAAACGCAGG
CCGGCGAGGACGAGAACTACAGTCTGCTGTGCCAGGCGCACGAGCAGTTC
AACAACTCGGAGTTTGATCGCTGCTTGGAACTGCTCCAGGAGTTGGAGAC
GCGCGGCGAGAGCAGTGGTCCTGTCCTGCGGCACAACCGGGCGGTGGTCA
GCTACTACAAAACCGGGTGCACCCAACACTCCGTCCTGCTGAAAGAACTG
GAGGCTCTAACCGCCGATGCAGATGCGCCCGGAGACGTGTCCAGCGGGCT
GAGCCTTAAGCAGGGAGCTGCCGCCGCCACTGTTGCTCGTTACAACCGGG
CGGTCATCTATTATCACCGCCATATGTTCGGCACGGCACTGGAGAAACTA
GCACCACTAGTGGCTCGTCTGGAAGCCCTGGAGAAGGCAATGGCAGCGCT
GGTGGCCACACTACAGCTACAGCTGCTGCTGGCCACCAATCAACTAAACC
GAGCCGAGGCCTTTCTGGATTACTTGCAGTACAAGCTTAACCTGGTGGCC
ACAGCGCCTAGCAGCAATGCGGCCGAAGAGGCAGCTGTTGTCGGCACAGC
ACCTCCGTCAGCAGCGACGAACAGTTCAGTGGTGGCCTCACCAGGAGGAG
CAGCTGTGGAGGGAGCTGTGCCCGGTCTGGGCGGTAGTCTGCAGCTCTTG
CAGCTAATAACGCTCGTGCTTAACCGAAAACCGGTGGTTATTCAGGAAGA
CGGCACGCCGGAGTACGCTGCTCTGAAGGCTCAGCAGTACTACATCATGA
AGGATTTTCAGATGGCCGCCAAGCAGCTTATGCGAATCAATAACGAGTGT
ACACAAGCGGGCACTATAACCCCCCAGCTGAGCACGTGCATTGCCAACAA
TATGGGAGTGATACACTTAAGAGTGCGTCACTATGCCATCGCCGCCAAGT
TCTTCCAAAATGCGCTCAACTTTGACCAGCAGCTGGCGCGAAATTTGCGC
CAGAGTACGCTGCAAACCATGAGTTCGGCACGGTCCTGCGAGATCCTTTA
CAACCTCGGTGTGGCCATGTTGCACCTACGACGCCCCAAGGAGGCGTTTC
AGTGCTTTCTGGTTCCCGTTAAGCAATTCCACAGCAATCCACGTCTTTGG
CTGCGCATGGCTGAGGCCTGCATCATGGAGCATGAGGCGAAACTAGTGGA
GGAGGAGCGCCAGTCGCAGTCAGAAACGCCATCAACAAAGCCATACGCTC
CTCAATCGGCGGGAGTTCCAGAGCCCACGCTGGAATTCGCTGTCTTGTGT
CTACGTAGCGCGTTAACGCTTACGCAGCACTACAAGACGAGGTTTCACAT
GGCGGCGGTCTCCTCGGAGGATGTGGAAGCACCCGAACCCAAGGACCCAA
CTCAGGAGAGTTGGCGTCATCCCCAGGACAATAACTTCTGCAATCCCTCG
AAGCCAGTCAGCCTAGAGTCTTTGGAAAACATGATGGCTGCCATATATGC
TGCTCACAGCTTCGTCTCGCTGCGCCTAGGCGATCATGTGACCGCGCTCG
AGATGTCGGAAAAACTGCTGGCCTGTGAACGCTTGTCCGATGCACACAAA
TTGCTAGGTCACATGTACGCTGGCGAGGCGTTGATGCTTATGGACAAGGC
CAGCGAGGCACGCGACCATTTGGACCCTACTTTTGTGGGCACACTAAACG
CCTTCGATTTTGAGACGCGTGACTGGCAACTGAAGTCGGTGGACGCCGCT
CAGAACGTTGTGCGGTATAATCTGGCCGTTGCCATGGCTCTACAGAACGA
CCTGCCTCAAGCTAAAGCACTCCTGGCCAATTTAACTCATTCGCTGGTTG
CCAACAAGGCGCTTGCTTTGCGACGCTTCATGGACCTCAAAATGGGTCCC
GTTCCTGGCGGGACGCCGAGTGCAAGCTTTCTAGACCAT
BO35190.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:01:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Not10-RA | 1908 | CG18616-PA | 1..1905 | 17..1921 | 9525 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:01:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Not10-RA | 2026 | CG18616-RA | 68..1973 | 16..1921 | 9530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:01:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12630878..12631633 | 106..861 | 3780 | 100 | Plus |
| 3R | 32079331 | 3R | 12632235..12632585 | 1249..1599 | 1755 | 100 | Plus |
| 3R | 32079331 | 3R | 12631693..12632021 | 861..1189 | 1645 | 100 | Plus |
| 3R | 32079331 | 3R | 12632651..12632972 | 1600..1921 | 1610 | 100 | Plus |
| 3R | 32079331 | 3R | 12630714..12630803 | 16..105 | 450 | 100 | Plus |
| 3R | 32079331 | 3R | 12632117..12632176 | 1189..1248 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 15:01:55 has no hits.
BO35190.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-03-03 17:24:59 Download gff for
BO35190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18616-RA | 69..1973 | 17..1923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:29:45 Download gff for
BO35190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Not10-RA | 69..1973 | 17..1923 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:29:45 Download gff for
BO35190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12632235..12632585 | 1249..1599 | 100 | -> | Plus |
| 3R | 12632651..12632972 | 1600..1923 | 99 | | Plus |
| 3R | 12630715..12630803 | 17..105 | 100 | -> | Plus |
| 3R | 12630878..12631633 | 106..861 | 100 | -> | Plus |
| 3R | 12631694..12632021 | 862..1189 | 100 | -> | Plus |
| 3R | 12632118..12632176 | 1190..1248 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-03-03 17:24:59 Download gff for
BO35190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8457957..8458307 | 1249..1599 | 100 | -> | Plus |
| arm_3R | 8458373..8458694 | 1600..1923 | 99 | | Plus |
| arm_3R | 8456437..8456525 | 17..105 | 100 | -> | Plus |
| arm_3R | 8456600..8457355 | 106..861 | 100 | -> | Plus |
| arm_3R | 8457416..8457743 | 862..1189 | 100 | -> | Plus |
| arm_3R | 8457840..8457898 | 1190..1248 | 100 | -> | Plus |
BO35190.pep Sequence
Translation from 16 to 1939
> BO35190.pep
MDSAESPTKTQAGEDENYSLLCQAHEQFNNSEFDRCLELLQELETRGESS
GPVLRHNRAVVSYYKTGCTQHSVLLKELEALTADADAPGDVSSGLSLKQG
AAAATVARYNRAVIYYHRHMFGTALEKLAPLVARLEALEKAMAALVATLQ
LQLLLATNQLNRAEAFLDYLQYKLNLVATAPSSNAAEEAAVVGTAPPSAA
TNSSVVASPGGAAVEGAVPGLGGSLQLLQLITLVLNRKPVVIQEDGTPEY
AALKAQQYYIMKDFQMAAKQLMRINNECTQAGTITPQLSTCIANNMGVIH
LRVRHYAIAAKFFQNALNFDQQLARNLRQSTLQTMSSARSCEILYNLGVA
MLHLRRPKEAFQCFLVPVKQFHSNPRLWLRMAEACIMEHEAKLVEEERQS
QSETPSTKPYAPQSAGVPEPTLEFAVLCLRSALTLTQHYKTRFHMAAVSS
EDVEAPEPKDPTQESWRHPQDNNFCNPSKPVSLESLENMMAAIYAAHSFV
SLRLGDHVTALEMSEKLLACERLSDAHKLLGHMYAGEALMLMDKASEARD
HLDPTFVGTLNAFDFETRDWQLKSVDAAQNVVRYNLAVAMALQNDLPQAK
ALLANLTHSLVANKALALRRFMDLKMGPVPGGTPSASFLDH
BO35190.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:01:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Not10-PA | 635 | CG18616-PA | 1..635 | 1..635 | 3229 | 100 | Plus |
