BO35191.complete Sequence
2512 bp assembled on 2014-03-03
GenBank Submission: KX796683
> BO35191.complete
GAAGTTATCAGTCGACATGTCCCAATCCGCGGGGGACATTCGCAGACCTA
TCAAGTCGCCCCAGATGCAAAACAAAAAAACCCAGACACTAGAGTCTGTC
CATAAGTCACACAAACACACAAAGAAGTGCCAATGTAAATCCAGGAGACA
GGATTCCAAAGTTAGCTCTTGTCAGACGGACATTCATCATCCGGAAAGGG
AGCAGCAAGAAATTCAGCCACTCATGAGAGACCAAAGGAAAGCTAAACAG
CGCCATGAAAAGGATCATCAACTGGAAAGGGAACAGCAAGGAATTCAGCA
ACTCACGAGGGACCAAAGAAAAGCTACAAAGCGCGAAAAGGTGCGCGAGC
AAGAGCGACAGTACACGGCGGCTCAGTTCGAGAAAATTCGGGGCAATAGG
CGGCATGTGAGCAAGGAGAACCAGCAGCCCGAGAACCCTGTAGTAAATCC
CTCCACCGGCGTCACAGCCTCCTCATCAACCACTTCATTAGACGTTGGAT
CCGGTAGTAGACCGCGAGGGGTATTGGATATAGGAATCGAGTTGGTCTGT
TCTCTGGTAAAATCTCGCAGCCTCAGCCAGGGACAGAAGAAAAAACTCGT
CCGTGATATAGCCAGGCGTATCTCCTGTCTGGAACTGACCGAATCCAGCA
CTAGTTCGCGTTCCCTGAGCAGCAGCAGCAAGGAGCAGTTGAAGGTGCCT
ACAGGTTCTCTGCAGCAAGTTGCGGCCACCAATACGAACCAATCCAATGC
GAGAAGCTCATCCAAAGCTGAACGTATTGCTCCACCAGTTCCCGCTCCAC
GAAAGCGAGCAGCTATCGGATCATCTTCGCCACTGCCTGAAAGCGTATCG
TACAGTGGCTCAACCAGTGGCTCAGGCGAGGTGATCACCCAGAAGACAAA
TATACCGAATCGCAATGCCTCAACGGATGCAGATATTGAGCCTTTGGATT
TGCAGGATTGGCTGAATCCCATGACCCTGAGTGAAATAGAGTTCGAAGAG
CGTTTGAAAGGTGGCACGGATTCGGAGCGAAGGAGGCAGCTCCACTGGGT
CAAGACAGAGATTAATCGCATGCAGGAATTTAAAAATCTTTTGGAAAGTA
TCAGTTTGCCCAGCAAGTCGCAGAAGAAAGCAAACACGGAATCTGCGACG
GCTGCGCAGATTCCAAGTTCCATGCGATGTATGGGCGACCAGAAGGAGCG
ACCGGACAAGGAATATCTTCTGCGACAAGAAATGTCAGCTGAAGCAGAGA
GCAAAGAGATGGAAAATTCGGAAACAACAACAACACCGCCGCCCCCAGTG
AGAATTGAATCGGTTGGAGTGAATGTGACCAATTCTGATCCTTCCACACT
GCCAGCACCGCCCCCGACACAACCACCACCACCACCTCCTCACCTTAACC
AGCGGAATCTGCAGAACCGTAAAAAGATGGCCACTCCTTTACTTGTCTCA
GGTAGCTCTACCAGTGGCGGCGGTCGCAGTGAAAGTGTCTGCTCCTTTGT
CCAGCAAAGGCAGCGTCAGTTCTGCGAGCATTATGAGAACGAGCAGCTTG
AAGAGTTTGTATTGCTCCAGAAACAGAAACTTTACCAGCTGCGGAAACAG
CTGAACCAGCAAAAAGATATTTTGATACAGAGGCAGCAACATTGTGGTCA
GCGGACTTACGTTCATCAGCAGCATTGCCCGAGGCGTCAACAGGAAGCAC
AGGATCAGCACGATGAACGAGAGCAATATATGCAGATGCAGTACGCCCAG
GCGGCGGGTGCCTATGCATCCGGCGCGGTTGGGAATGAAGCCATCTACCA
CCAGGTGGTCAACCCTCAGGGAGTAGCTAGCTATGTGCAAGCAACAATGG
TGAGCACAGAGACACAAAATGAAGCAACTGCAACTGGTGGAGCAGGAGGC
TCGTCCATCACCAGATGTGAGACCACCACTCGTCAGTACGATGATGTGGC
ATGTCAGCGGGTGCGAAGGGGGCACAAGGAGACCAGGATGAATGCAGAGC
GTATGCAACGCCAAGTGCGTCCACGTGCTATATCCTATGTCATCCAGTTT
ACGCCGACGGGCAGCAGTGAGGTGATTGAGAAACCTCCCTCCCTGCAGGA
TCAACTGCAGCTGGCTCGTCCCGAATTCTGTGCCAATGCCAAGCAGCGCA
AGGCCATACTTAATGAGATGCAGATGATTCGCAATGCTCGGCGCCAGGAG
CTGGACAATGTTTTGAGCCAGAGTACCAGCATGGAGGCGCTGAACAGGCA
TCTGGAGCAGCTGCCTCCAGCAGCCAATACTCGAGTTAAATTATTTACCA
CCAGGGAAATGAAGGCGATTACCTCCAAACGGTGCAAAAATTTGCCGGAA
GTGTTGGCCGCCCAAAGTCGCCAGGAGGAGGAGCAGAGACGTCGCTCCAA
TCGTTTGATGCGCGATGCTTTCAACAAGCGCCTCAAAAGTCGCGTGGCCA
GCGGAAATATATCGCAGCGTGGTAATCATCTAGAGAAGATCGAAGCAAGC
TTTCTAGACCAT
BO35191.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:02:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12184-RA | 2946 | CG12184-PA | 465..2943 | 16..2494 | 12395 | 100 | Plus |
| CG12184-RC | 2481 | CG12184-PC | 1..2478 | 17..2494 | 12390 | 100 | Plus |
| CG12184-RB | 2964 | CG12184-PB | 465..2961 | 16..2494 | 12180 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:02:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12184-RC | 2876 | CG12184-RC | 102..2580 | 16..2494 | 12395 | 100 | Plus |
| CG12184-RA | 3292 | CG12184-RA | 518..2996 | 16..2494 | 12395 | 100 | Plus |
| CG12184-RB | 3310 | CG12184-RB | 518..3014 | 16..2494 | 12180 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:01:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4628701..4629687 | 1681..695 | 4935 | 100 | Minus |
| X | 23542271 | X | 4632869..4633825 | 1651..695 | 4545 | 98.3 | Minus |
| X | 23542271 | X | 4629740..4630419 | 695..16 | 3400 | 100 | Minus |
| X | 23542271 | X | 4628029..4628627 | 2279..1681 | 2995 | 100 | Minus |
| X | 23542271 | X | 4633878..4634389 | 695..184 | 2230 | 95.7 | Minus |
| X | 23542271 | X | 4632020..4632387 | 2279..1921 | 1595 | 96.2 | Minus |
| X | 23542271 | X | 4627823..4627971 | 2428..2280 | 745 | 100 | Minus |
| X | 23542271 | X | 4631814..4631962 | 2428..2280 | 670 | 96.6 | Minus |
| X | 23542271 | X | 4632488..4632635 | 1916..1769 | 620 | 94.6 | Minus |
| X | 23542271 | X | 4635312..4635412 | 116..16 | 400 | 93.1 | Minus |
| X | 23542271 | X | 4627676..4627743 | 2494..2427 | 340 | 100 | Minus |
| X | 23542271 | X | 4632670..4632747 | 1758..1681 | 330 | 94.9 | Minus |
| X | 23542271 | X | 4634953..4635013 | 181..121 | 275 | 96.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 15:01:59 has no hits.
BO35191.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-03-03 17:25:02 Download gff for
BO35191.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12184-RA | 519..2996 | 17..2496 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:29:47 Download gff for
BO35191.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12184-RA | 519..2996 | 17..2496 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:29:47 Download gff for
BO35191.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4627674..4627741 | 2429..2496 | 97 | <- | Minus |
| X | 4627823..4627971 | 2280..2428 | 100 | <- | Minus |
| X | 4628029..4628626 | 1682..2279 | 100 | <- | Minus |
| X | 4628701..4629686 | 696..1681 | 100 | <- | Minus |
| X | 4629740..4630418 | 17..695 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-03-03 17:25:02 Download gff for
BO35191.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4521707..4521774 | 2429..2496 | 97 | <- | Minus |
| arm_X | 4521856..4522004 | 2280..2428 | 100 | <- | Minus |
| arm_X | 4522062..4522659 | 1682..2279 | 100 | <- | Minus |
| arm_X | 4522734..4523719 | 696..1681 | 100 | <- | Minus |
| arm_X | 4523773..4524451 | 17..695 | 100 | | Minus |
BO35191.pep Sequence
Translation from 16 to 2512
> BO35191.pep
MSQSAGDIRRPIKSPQMQNKKTQTLESVHKSHKHTKKCQCKSRRQDSKVS
SCQTDIHHPEREQQEIQPLMRDQRKAKQRHEKDHQLEREQQGIQQLTRDQ
RKATKREKVREQERQYTAAQFEKIRGNRRHVSKENQQPENPVVNPSTGVT
ASSSTTSLDVGSGSRPRGVLDIGIELVCSLVKSRSLSQGQKKKLVRDIAR
RISCLELTESSTSSRSLSSSSKEQLKVPTGSLQQVAATNTNQSNARSSSK
AERIAPPVPAPRKRAAIGSSSPLPESVSYSGSTSGSGEVITQKTNIPNRN
ASTDADIEPLDLQDWLNPMTLSEIEFEERLKGGTDSERRRQLHWVKTEIN
RMQEFKNLLESISLPSKSQKKANTESATAAQIPSSMRCMGDQKERPDKEY
LLRQEMSAEAESKEMENSETTTTPPPPVRIESVGVNVTNSDPSTLPAPPP
TQPPPPPPHLNQRNLQNRKKMATPLLVSGSSTSGGGRSESVCSFVQQRQR
QFCEHYENEQLEEFVLLQKQKLYQLRKQLNQQKDILIQRQQHCGQRTYVH
QQHCPRRQQEAQDQHDEREQYMQMQYAQAAGAYASGAVGNEAIYHQVVNP
QGVASYVQATMVSTETQNEATATGGAGGSSITRCETTTRQYDDVACQRVR
RGHKETRMNAERMQRQVRPRAISYVIQFTPTGSSEVIEKPPSLQDQLQLA
RPEFCANAKQRKAILNEMQMIRNARRQELDNVLSQSTSMEALNRHLEQLP
PAANTRVKLFTTREMKAITSKRCKNLPEVLAAQSRQEEEQRRRSNRLMRD
AFNKRLKSRVASGNISQRGNHLEKIEASFLDH
BO35191.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:01:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12184-PC | 826 | CG12184-PC | 1..826 | 1..826 | 4215 | 100 | Plus |
| CG12184-PA | 981 | CG12184-PA | 156..981 | 1..826 | 4215 | 100 | Plus |
| CG12184-PB | 987 | CG12184-PB | 156..987 | 1..826 | 4198 | 99.3 | Plus |
| CG12179-PD | 1322 | CG12179-PD | 468..1314 | 20..816 | 3530 | 85 | Plus |
| CG12179-PC | 1322 | CG12179-PC | 468..1314 | 20..816 | 3530 | 85 | Plus |
