BO35192.complete Sequence
2422 bp assembled on 2014-03-03
GenBank Submission: KX799064
> BO35192.complete
GAAGTTATCAGTCGACATGGGCAACGAGGAATCCTCCCCGGGAGGCAGCC
CCCGCCTCTCCTCGGGCTACACTTCTTCTATACACCAGGATCGAGATTTC
AGTGCCAAGATCCAAACAACGGAGTTTGACCTCGGTCAAGCGGGATTTAC
CGATTCCGGCGAGGAACGGGAGATCGTTTACCTAAAGGAAGAGGTCAAGA
GTCTGCGTAGCCAACTGAAAGAGCTAAATGCCCGGCACTACGAAGCCATG
GAAACAGCAGACTCACACTGGGTAGATCTGGAGCAGCAGTACAAGGAGCG
CGAGGAGGCCCAACAGGCCAAGGAGGCCAGTCTCAAGCAGAAGATAGCCC
AACTGCAAGATTGCCTCCGGGAGGATTCCCGAGCGGCGACCGAAAAGATC
CAGCAGCTGGAGGAGGGGGAACTGTCATTGAAGTCCTGCCTGGTCCGCAT
GACCAAGGAGCATCGCGACCTGCTCACCGAGAATCGCACTCTGCAGTGCA
GCTTGGAGAGTCTAATGGCCAAAATGGAAAAGGAGGCGGAACACAAGATG
CCCCTAACAGAGGCTCTAGAAAACGAGAGGCGCAAAACCCAGGCACTGAT
GGATGACCTTATCTTTGCCAAGAAGGTGCAGCAGAACACCGAGGATCAGT
TGAGGCAGGAGACGGATGCTTTGCGCACCCAGATCTTCAACATCAAAAAG
GATTACCTGCACATCGAGGTCACAAATGGCGAGCTGAAAGAGGAGGTGGG
CACGCTGGAGAACAAAATCCGCCAGATGGAGAACCAAATGAGGGATTCGG
AGGAGCGGGCGCGCTGCCTGGAGGACGAGCTGCGAACCAAGGACGAACAA
TGCCAGCTCTTGGAACGCAAACTGGGCGTTATGCCCGAGGGCTACAGCCT
GGCCGATGAACTCCATGATAGTCCTGCGAAGCGGGCCAAGAAGGATGAGG
TACCGAGCCTCCAGGCTGCCAGCCAGGGACTGGGCGTGGCCCTACTCGAT
CTCGAGGGTCGTGATTTTGGTCTACCACTGCACAAGGACTTCCAAGCAAT
TGCCTGCAGTGTAAAGCAACTGGCGGATACCCTTCTCTCACAGAGTCCGT
CCGAGGTGAGTCTCCAAAGCAAAGAGCCCGCCAAGCCAGCTGGTTCGGAA
CCCGAAGGCTCCAGTTGGGCTACGGTCCAGGATGCCTCCTCAGAAAAAAT
ACCTGAGACAGGACTATCAACTGTGACTAGTCTAGAATGCCAGGGAAATC
AAGAAACTCAAGATAATCAGGTCATTCAAGAAAATCCGGGAAGTCTAGAA
AGTCAAGTCGATTCAGAATATCTGGAAAGTCAAGAAAGAAATCTCGTTAG
CAGCAAGAAATCTAGTTATGTTAGTGTCGTGACATCCTCATGCCGGTCAA
TAGTACGGGAATTAGCTGGGGGATCTGCCCAAAAATCTGAACTACACCTT
GGTGAATCAGACAGCAGGGCGAATCCGCAGATAATTCGACCAACAGATGA
GCAAGAGAAGAAGATCACCGCGGTGCCCTATTCCATGAGACAGATGTTCA
ACGAGGTTTGTTCTGTGGATCAGCAGCACGAACCCGAGCTCAAAAAGAAA
AGCAAAAAGCGAGCAAAGAATAAGAAGGAGAAGCATCCAAGACCAAACAG
TCACCAGCGAAAAATACAGCGTTTCCTCTTCCGTCACATTTACCGTCCAC
GTACGCTCAATCGAACTCTGGGTTTCCCTCTTCAAAAGAGCCTCTCCTGC
AGTAGTTTCCACTCTCTGTTGTCAGTTCACTCGGTTCACTCGGCCAGATC
CGGAATTTCCCTGCACTCCCTTCACGCTGAAGTTGTTAATCTTAATTGGG
AATCTCTGGCCAGCGTGTCATTTGTACAAACGGACGAGGTGAAAACCCTG
GAGGAGGAGGTTCAGGTCACGACACAGTGCAATGAAAAGGAGATGCAAGT
TCAACCAGAGACGATTGAGTGTGGAACACAGGTCGATGTGGGTGTGGAGC
AACGACTGCTCCTGATGCCTCTGAGAACCAGGTGCTTCGTGGATTTGATT
CAGGGCGCCGTGGACGGATACCTCGATGTTGCCGCATTCCGGACCCGTCT
TCTTCACTTATGGGAGGGCGGAGAGGATTTCCGTGAGCATCTTGAATTTT
TGCAAGACATGTGGATTGAAAAGAGTACTCAGAAGACGCAGGAGAGCTAT
GAAGGATTTGTGGCTGCTCTGGACTGTGTCCATAACCTAAAGTTGGCCCT
TAAGCCTGCATCTTCGGCGCTTTTGCAACAAATCGAGCAGCGAATCCACA
CAAGACTTCTGCTCTTCCATAACCACAAGGCGGAATCGGAGTTCTGCTGC
ACTGTCTACATTCCCGTGGAGAGGAGCAATTCCACCTTGTTCAGAGCTAA
GAAAGCAAGCTTTCTAGACCAT
BO35192.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:02:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pif1A-RI | 2391 | CG42599-PI | 1..2388 | 17..2404 | 11940 | 100 | Plus |
| Pif1A-RA | 2640 | CG42599-PA | 1537..2625 | 17..1105 | 5445 | 100 | Plus |
| Pif1A-RH | 3795 | CG42599-PH | 2692..3780 | 17..1105 | 5445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:02:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pif1A-RI | 3253 | CG42599-RI | 826..3213 | 17..2404 | 11940 | 100 | Plus |
| Pif1A-RA | 6324 | CG42599-RA | 1769..2857 | 17..1105 | 5445 | 100 | Plus |
| Pif1A-RH | 7694 | CG42599-RH | 3139..4227 | 17..1105 | 5445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:02:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8780987..8782386 | 2404..1005 | 7000 | 100 | Minus |
| 3R | 32079331 | 3R | 8782441..8783431 | 1007..17 | 4955 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 15:02:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hobo | 2959 | hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). | 1863..1917 | 1252..1306 | 140 | 72.7 | Plus |
BO35192.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-03-03 17:25:04 Download gff for
BO35192.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pif1A-RI | 826..3213 | 17..2406 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:29:50 Download gff for
BO35192.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pif1A-RI | 826..3213 | 17..2406 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:29:50 Download gff for
BO35192.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8780985..8782384 | 1007..2406 | 99 | <- | Minus |
| 3R | 8782442..8783431 | 17..1006 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-03-03 17:25:04 Download gff for
BO35192.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4606707..4608106 | 1007..2406 | 99 | <- | Minus |
| arm_3R | 4608164..4609153 | 17..1006 | 100 | | Minus |
BO35192.pep Sequence
Translation from 16 to 2422
> BO35192.pep
MGNEESSPGGSPRLSSGYTSSIHQDRDFSAKIQTTEFDLGQAGFTDSGEE
REIVYLKEEVKSLRSQLKELNARHYEAMETADSHWVDLEQQYKEREEAQQ
AKEASLKQKIAQLQDCLREDSRAATEKIQQLEEGELSLKSCLVRMTKEHR
DLLTENRTLQCSLESLMAKMEKEAEHKMPLTEALENERRKTQALMDDLIF
AKKVQQNTEDQLRQETDALRTQIFNIKKDYLHIEVTNGELKEEVGTLENK
IRQMENQMRDSEERARCLEDELRTKDEQCQLLERKLGVMPEGYSLADELH
DSPAKRAKKDEVPSLQAASQGLGVALLDLEGRDFGLPLHKDFQAIACSVK
QLADTLLSQSPSEVSLQSKEPAKPAGSEPEGSSWATVQDASSEKIPETGL
STVTSLECQGNQETQDNQVIQENPGSLESQVDSEYLESQERNLVSSKKSS
YVSVVTSSCRSIVRELAGGSAQKSELHLGESDSRANPQIIRPTDEQEKKI
TAVPYSMRQMFNEVCSVDQQHEPELKKKSKKRAKNKKEKHPRPNSHQRKI
QRFLFRHIYRPRTLNRTLGFPLQKSLSCSSFHSLLSVHSVHSARSGISLH
SLHAEVVNLNWESLASVSFVQTDEVKTLEEEVQVTTQCNEKEMQVQPETI
ECGTQVDVGVEQRLLLMPLRTRCFVDLIQGAVDGYLDVAAFRTRLLHLWE
GGEDFREHLEFLQDMWIEKSTQKTQESYEGFVAALDCVHNLKLALKPASS
ALLQQIEQRIHTRLLLFHNHKAESEFCCTVYIPVERSNSTLFRAKKASFL
DH
BO35192.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:01:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pif1A-PI | 796 | CG42599-PI | 1..796 | 1..796 | 4054 | 100 | Plus |
| Pif1A-PA | 879 | CG33719-PA | 513..875 | 1..363 | 1832 | 100 | Plus |
| Pif1A-PG | 1226 | CG42599-PG | 860..1222 | 1..363 | 1832 | 100 | Plus |
| Pif1A-PH | 1264 | CG42599-PH | 898..1260 | 1..363 | 1832 | 100 | Plus |
