Clone BO35194 Report

Search the DGRC for BO35194

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:351
Well:94
Vector:pDNR-Dual
Associated Gene/TranscriptninaG-RB
Protein status:BO35194.pep: Imported from assembly
Sequenced Size:1777

Clone Sequence Records

BO35194.complete Sequence

1777 bp assembled on 2014-03-03

GenBank Submission: KX797149

> BO35194.complete
GAAGTTATCAGTCGACATGGGCATGAAATTCCAAAAGATCCTGGTTTTGG
CTGGTATTGTAATAGGATTCCTCTCCATCATCGTTGTCCTGGCCGGCACG
CTGCTTAAGAACTCCGTACCCAATGTCTTGGCACCAGTGGAGCGGCACTT
TGCATTTGACTACGTGATTGTGGGTGGTGGAACTGGAGGCAGCACACTTA
CCTCGCTACTGGCCAAAAACAGCAATGGGAGTGTTCTTCTCATCGAGGCA
GGTGGTCAGTTTGGCCTCCTGAGTCGGATTCCCTTGCTGACCACCTTTCA
GCAGAAGGGCATCAATGACTGGTCGTTCCTTTCTGTGCCACAGAAACACT
CCTCCAGAGGTCTCATTGAACGAAGGCAGTGCCTCCCGAGGGGCAAAGGA
CTGGGTGGATCCGCCAATCTGAACTACATGCTGCACTTCGATGGTCATGG
ACCGGATTTTGATTCCTGGCGGGATCACCACAATCTTAGCGATTGGAGCT
GGGCCCAAATGAGATCTTTTATGGCTGCCGCCAAGCCCAAGAACCCAGAC
ATGCTCGAAATTCCCCGTCGCTACTCCAAATTAACTGAAGCTTTGGAGGA
AGCGCAGGCGCAGTTTGCCTACAAGGATTGGATCTTTAGACGCTCATTGT
ATAATATTAGGAATGGTTTGCGTCATTCGGTGGTACAGCAGTTCCTTAAC
CCGGTCATACATCACTCCAATCTGCGCCTGCTGCCGGATGCTTTGGTGAA
ACGGATTCAACTTGCCCCAAGTCCGTTCCTCCAAGCCACCTCGATTCTCG
TGGGGATTAAGGACGAGGAGAACAGGGAGAAAGAATTTAGCATCGAGCTC
CTGATGGCATCTGGAATTGGAGACGTGTCCGCCCTGAAGAAACTTGGTAT
TCCCGCTCAGCATAGCTTGCCTTTGGTGGGCCACAACCTGCACGACCACT
TTAATCTTCCGCTTTTCGTATCGATGGGAGTCACTGGACCCACACTAAAC
CAGAACACTCTCTTGAATCCCATGACCTTGATCAACTACCTGAGCTCTGG
TTCGGGACCCTTGGGGAACTTTGGAGTGCTGGGAAATGTAGTCAGCTATG
GAGGATTGGGAGCCCCGCCCTACGGCATCACCTTCTTTGGAGCCGGCGCC
ATCGACGAGTCTGCTCTGATGTCCATATCAAATTTCAAAGGTCCAGCATT
CCGGGCGCTCTTTCCACGCTATTACAATTCCTCGCAGGAGGGATTCGTGG
TCATCTCCAGCTGCCTGCAACCAAAGTCGCGTGGATCTGTGGGACTCCTT
AACAGACACATGCGAAGGAATCCCCTAATAGATCCAAACTATCTTAGCAG
CGAAGAGGACGTGGCCTGCACCATTTCCGCCATTCGAAGTGCAGTCGAGC
TGGTCAACTCTACTGCCTTTGCTGCACTGCATCCCCGCATCCATTGGCCG
CGCGTGCAGGAGTGCTCCAACTTTGGTCCCTTCGAGCGAGATTTCTTCGA
CAACCGTCCATCGGATCAATACCTGGAGTGTCTGATGCGGCACGTTGGCT
TGGGATCCCATCATCCGGGTGGAACATGCGCCCTCGGCAGCGTTGTGGAC
TCGCAATTAAGATTAAAAGGGGTATCCAATGTGCGGGTGGTAGATGCTAG
TGTACTACCCCGTCCGATCTCGGGAAATCCCAACTCGGTGGTGGTGGCCA
TCGCGTTGAGAGCCGCCTCTTGGATTCTGAAGAGCGAACTGCAGGCCGGT
GATTCGAAAGCAAGCTTTCTAGACCAT

BO35194.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:01:51
Subject Length Description Subject Range Query Range Score Percent Strand
ninaG-RB 1746 CG6728-PB 1..1743 17..1759 8715 100 Plus
ninaG-RA 1794 CG6728-PA 878..1791 846..1759 4570 100 Plus
ninaG-RA 1794 CG6728-PA 1..831 17..847 4155 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:01:52
Subject Length Description Subject Range Query Range Score Percent Strand
ninaG-RB 1889 CG6728-RB 33..1776 16..1759 8720 100 Plus
ninaG-RA 1937 CG6728-RA 911..1824 846..1759 4570 100 Plus
ninaG-RA 1937 CG6728-RA 33..864 16..847 4160 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:01:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11420699..11421376 847..170 3390 100 Minus
3R 32079331 3R 11420099..11420652 1399..846 2770 100 Minus
3R 32079331 3R 11419835..11420048 1611..1398 1070 100 Minus
3R 32079331 3R 11421455..11421589 170..36 675 100 Minus
3R 32079331 3R 11419489..11419596 1759..1652 540 100 Minus
3R 32079331 3R 11419739..11419781 1652..1610 215 100 Minus
Blast to na_te.dros performed on 2014-11-28 15:01:50 has no hits.

BO35194.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-03-03 17:24:57 Download gff for BO35194.complete
Subject Subject Range Query Range Percent Splice Strand
ninaG-RB 34..1776 17..1761 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:29:43 Download gff for BO35194.complete
Subject Subject Range Query Range Percent Splice Strand
ninaG-RB 34..1776 17..1761 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:29:43 Download gff for BO35194.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11419486..11419595 1653..1761 98 <- Minus
3R 11419739..11419779 1612..1652 100 <- Minus
3R 11419835..11420046 1400..1611 100 <- Minus
3R 11420099..11420650 848..1399 100 <- Minus
3R 11420699..11421375 171..847 100 <- Minus
3R 11421455..11421589 36..170 100 <- Minus
3R 11421642..11421660 17..35 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2014-03-03 17:24:57 Download gff for BO35194.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7245208..7245317 1653..1761 98 <- Minus
arm_3R 7245461..7245501 1612..1652 100 <- Minus
arm_3R 7245557..7245768 1400..1611 100 <- Minus
arm_3R 7245821..7246372 848..1399 100 <- Minus
arm_3R 7246421..7247097 171..847 100 <- Minus
arm_3R 7247177..7247311 36..170 100 <- Minus
arm_3R 7247364..7247382 17..35 100   Minus

BO35194.pep Sequence

Translation from 16 to 1777

> BO35194.pep
MGMKFQKILVLAGIVIGFLSIIVVLAGTLLKNSVPNVLAPVERHFAFDYV
IVGGGTGGSTLTSLLAKNSNGSVLLIEAGGQFGLLSRIPLLTTFQQKGIN
DWSFLSVPQKHSSRGLIERRQCLPRGKGLGGSANLNYMLHFDGHGPDFDS
WRDHHNLSDWSWAQMRSFMAAAKPKNPDMLEIPRRYSKLTEALEEAQAQF
AYKDWIFRRSLYNIRNGLRHSVVQQFLNPVIHHSNLRLLPDALVKRIQLA
PSPFLQATSILVGIKDEENREKEFSIELLMASGIGDVSALKKLGIPAQHS
LPLVGHNLHDHFNLPLFVSMGVTGPTLNQNTLLNPMTLINYLSSGSGPLG
NFGVLGNVVSYGGLGAPPYGITFFGAGAIDESALMSISNFKGPAFRALFP
RYYNSSQEGFVVISSCLQPKSRGSVGLLNRHMRRNPLIDPNYLSSEEDVA
CTISAIRSAVELVNSTAFAALHPRIHWPRVQECSNFGPFERDFFDNRPSD
QYLECLMRHVGLGSHHPGGTCALGSVVDSQLRLKGVSNVRVVDASVLPRP
ISGNPNSVVVAIALRAASWILKSELQAGDSKASFLDH

BO35194.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:01:04
Subject Length Description Subject Range Query Range Score Percent Strand
ninaG-PB 581 CG6728-PB 1..581 1..581 3015 100 Plus
ninaG-PA 597 CG6728-PA 1..597 1..581 2988 97.3 Plus
CG6142-PA 616 CG6142-PA 1..603 3..570 574 27.8 Plus
CG9522-PA 616 CG9522-PA 51..611 47..570 498 29.2 Plus
CG9521-PA 621 CG9521-PA 47..613 30..570 490 28.1 Plus