Clone BO35218 Report

Search the DGRC for BO35218

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:352
Well:18
Vector:pDNR-Dual
Associated Gene/TranscriptCG3739-RB
Protein status:BO35218.pep: Imported from assembly
Sequenced Size:1489

Clone Sequence Records

BO35218.complete Sequence

1489 bp assembled on 2013-12-04

GenBank Submission: KX795752

> BO35218.complete
GAAGTTATCAGTCGACATGAAGTATACCCTAGTAGTGCTCGCCCTGCTTG
CACCTCTGACTGCAGCAGCTAGTCTGGGTGAACAGAAACCGGAGGCGAAT
GCGTTCGTCAAATCTCTGAGAGAACTGCACCGAGGTCCTCCAGTTGAACC
AATGAAGACCAGGGCTAAGGTGGAGGAGCGCTGGATCACCCAGAAACTAG
ATAACTTCGATGACAGCAACAACGCCACCTGGCAGGATCGAATCTATATC
AACAACAAGTACTTCGTTGATGGCTCTCCCATCTTTATCTACTTGGGCGG
CGAGTGGGCTATCGATCCTAGTGGGATTACCTCTGGACTATGGAAGGACA
TTGCTAAGCAGCACAACGGCTCCCTTCTCTACACTGAACATCGCTTCTTT
GGCCAGAGTATCCCTATAACTCCTCTGTCCACTGAGAATTTGGCCAAATA
CCAGAGCGTGGAGCAGGCCCTGGCTGATGTGATTAACGTGATTGCCACGC
TGAAGCAGGAGGACAAGTACAAGGACTCCAAGGTTGTGGTCTCTGGTTGC
TCCTACTCGGCAACCATGGCCACCTGGATCAGGAAGCTCTATCCGGAAAT
CATCAGGGGCAGCTGGGCCTCGTCTGCACCACTCCTGGCTAAGGTGAACT
TCAAGGACTACATGAAGGTGGTCGGCGAGTCGTACGCTACCCTTGGAGGA
CAATATTGCTATGATCTGATCGATAACGCCACCTCGTACTATGAAAATCT
GTTCGAGATTGGAAATGGCACTCAGGCTGTGAAGGAATTGAACTTGTGCT
CCAACTTTAATGTAAACAGCGAACAAGACCGTTGGCAGATCTTCAGCACT
ATTGCAAACATTTTTGCTGGCATTGCTCAGTACCAAAAACCAGAGAAATA
TGATATACCCACCTACTGCTCGATCCTGAGAGAGTTCAGTGACGATGATT
CTGTTGCTTTGTCCAAGTTCATTAATTGGAAAATCAATGAGCATTCCGGA
GCTTGCCTTAGCACGACCTTTAAGGGAGCTGTTGGCTACTACGAATGGTC
TAAGGAGAACTACCAGGATAGTGACTTGCCCTGGATTTTCCAGACCTGCA
GCGAGTTCGGATGGTTCCAGTCTTCCGGCAGCAGAAGCCAACCCTTTGGA
TCCACTTTTCCGGCCACTCTCTATGAGGACACCTGCGAGGGGGTCTTTGG
AGCGAAGTACGACTCGGCTGGCATCCACGCTAATATCCGCGCAACAAACG
ATGACTTCGGTGGCCTAAACGTTAATGCCACCAACATCTATTTTGTGCAG
GGAGCTCTTGACGGTTGGAGTAAGGTGGGTGCTGGAGTTGCCCAGGGAGC
CACCATTATCCCATACGCCTCCCATTGTCCCGATACTGGATCGATCAGTG
CCAGCGATAGTGCCGAACTGGTGGCCTCCAAGAAAAAGCTGATCAAGCTC
GTGGCCCAATGGCTGGAGGATGCAAGCTTTCTAGACCAT

BO35218.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:42:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG3739-RB 1458 CG3739-PB 1..1455 17..1471 7275 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:42:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG3739-RB 1586 CG3739-RB 17..1471 17..1471 7275 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:42:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19393904..19394371 421..888 2340 100 Plus
3R 32079331 3R 19394673..19395073 1071..1471 2005 100 Plus
3R 32079331 3R 19393376..19393597 17..238 1110 100 Plus
3R 32079331 3R 19394427..19394610 889..1072 920 100 Plus
3R 32079331 3R 19393660..19393841 239..420 910 100 Plus
Blast to na_te.dros performed on 2014-11-28 14:42:32 has no hits.

BO35218.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-12-04 10:01:11 Download gff for BO35218.complete
Subject Subject Range Query Range Percent Splice Strand
CG3739-RB 17..1471 17..1473 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:20:49 Download gff for BO35218.complete
Subject Subject Range Query Range Percent Splice Strand
CG3739-RB 17..1471 17..1473 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:20:49 Download gff for BO35218.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19393376..19393597 17..238 100 -> Plus
3R 19393660..19393841 239..420 100 -> Plus
3R 19393904..19394371 421..888 100 -> Plus
3R 19394427..19394608 889..1070 100 -> Plus
3R 19394673..19395073 1071..1473 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-12-04 10:01:11 Download gff for BO35218.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15219098..15219319 17..238 100 -> Plus
arm_3R 15219382..15219563 239..420 100 -> Plus
arm_3R 15219626..15220093 421..888 100 -> Plus
arm_3R 15220149..15220330 889..1070 100 -> Plus
arm_3R 15220395..15220795 1071..1473 99   Plus

BO35218.pep Sequence

Translation from 16 to 1489

> BO35218.pep
MKYTLVVLALLAPLTAAASLGEQKPEANAFVKSLRELHRGPPVEPMKTRA
KVEERWITQKLDNFDDSNNATWQDRIYINNKYFVDGSPIFIYLGGEWAID
PSGITSGLWKDIAKQHNGSLLYTEHRFFGQSIPITPLSTENLAKYQSVEQ
ALADVINVIATLKQEDKYKDSKVVVSGCSYSATMATWIRKLYPEIIRGSW
ASSAPLLAKVNFKDYMKVVGESYATLGGQYCYDLIDNATSYYENLFEIGN
GTQAVKELNLCSNFNVNSEQDRWQIFSTIANIFAGIAQYQKPEKYDIPTY
CSILREFSDDDSVALSKFINWKINEHSGACLSTTFKGAVGYYEWSKENYQ
DSDLPWIFQTCSEFGWFQSSGSRSQPFGSTFPATLYEDTCEGVFGAKYDS
AGIHANIRATNDDFGGLNVNATNIYFVQGALDGWSKVGAGVAQGATIIPY
ASHCPDTGSISASDSAELVASKKKLIKLVAQWLEDASFLDH

BO35218.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:49:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG3739-PB 485 CG3739-PB 1..485 1..485 2566 100 Plus
CG18493-PA 480 CG18493-PA 6..479 5..483 1199 48.6 Plus
CG3734-PB 473 CG3734-PB 10..473 18..484 948 41.1 Plus
CG3734-PA 473 CG3734-PA 10..473 18..484 948 41.1 Plus
CG9953-PA 508 CG9953-PA 55..501 53..484 555 30.4 Plus