BO35232.complete Sequence
1723 bp assembled on 2013-12-04
GenBank Submission: KX795265
> BO35232.complete
GAAGTTATCAGTCGACATGTCTCTCCAGTTGAACGGCGGCAGTGACATCA
GCAGCAGTGGCACCTCCAGCAGCAGCAGCAACAACAAGGAGTCGTCCCCC
AGGACCACCAGGACGCCCAGGACACCGCAGACACCGCAGACGCCACAAAC
GCCGGCCAGCGGAGTAGCTGCATCTGTGGCAGAGACGCCACACAGCTGCA
TTCGGCAGGGCAACTGCGTCAAGGCCAACCAGGTTAAACTTTCCACGCTG
CACGAGTCCAAGATTTCTCCGAGGACTCCGCCCGTTACACCGGACTCACC
CAGTACCTATCTGGACGATGATATAGACTCGATGTACTCGTTCGCTACCA
CCACTTCGGGTCGCTCCACGATGTCCTGCGAGCATCCCTATGTGGCCAGG
AACGGCACCACCTTCAGTGGTCGCAAGATGAAGTACGTCGTGCATTGCTC
CAACTATGCGGGTCAGGTGGGACCCGATTATCTGACGCCCACGCAGCGGG
CACAGCGCCAGATCCGGCGGCTCAAGGAGCTGCTGTGCATCGCGCGACAG
GATCTGGAGCAGAAGGATACGGAGCTGCTGCGTCTGACGCGCGAGGTGGT
GGAGCTGCGCCTGTTCAAGGCATCGCTCAGTTCGCCGGAGGAGCGTTCGG
CCTCCTCCGATGCGGTCACCGTGCGTGAGGCGGAGCTGAAGACCTCGCAG
GATGTCTCGCCCATCGTCGACATGGTGGACGAGGGCAACGCAAAGGGCAG
TCCACGCCATCTAAGCCGCCAGCAGCAGCAGCAGGCGAACCACTCACTGC
AGGCCATGCAGATGTCGGCGGAGATGCAAAGCTCCTACGCGGACTCCGGC
CATTTCGAGGACCTAACCATGTCGTCGGTGCACTCGAAGGACTCGCAGAC
GCAGAGCGAGGCATGCGGCACAGCCACGCCCGATGGAGAAGCGGATGTGG
GATGCGGAGCCGGCGGTGATTCCGCCAGCAATCTGGAGAACTACGAGCTG
CAGCGACAGGAACTGATAAGCATGTACGAGCATCGGATCGAGGAGCTCAT
TCGGAGTCAGGACAGCGCCACTAGCGATCTGAAGCGATCCCACAACGACA
AGGTGGAGGCGCTGCTCCAGAAGCTGGCCGAGTGCAATACCAGGTACTCG
GACATGGTGCCCGACTATGAGCAGGCCAAGCAGCGCATCCGTGAGCTGGA
GAAGCAGCTGGAGGATTTGCAGCGCAAGCTGATCGAGCACGAGGAGAAGC
AGAACAAGATGTACCTGCACATGTACCAGCAGGGACAGGAGGCGGAGCGC
ATTTCTCGAGCGGATCAGGCACTGGATTTGGCACAGCGTCAACCGGAGAG
CAAGGTGTCGATCAATGAGCTACTGCATCAGTTGCAGAGCACGCAGGACG
AGTTGGAGAACATACGCACCATTTATCGCCGCCTGCTGGAAGCCCAGAAG
AATCGCACCCATGTGGATCCGGAGGTGACGCTGCAGTTCCTCAAGAGCGC
TATCTTCTACTTCCTCACGGACAAGGAGAACTCCCAGGGCCATCTGCAGG
CCATCGAGAGCATACTCGAGTTCACCGATGCCGAGAAGCAGAAGATCAGC
GCCGCCAATCGAACGCCAAAATTGCACGCCAAAATGAGCAAAACGATGTC
TACGATTTTGGTTCGCGCTAAATTGCATTGTTTTCAGCTAATTGGCTGGC
GGCATGCAAGCTTTCTAGACCAT
BO35232.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:42:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| qtc-RN | 1692 | CG14039-PN | 1..1689 | 17..1705 | 8430 | 99.9 | Plus |
| qtc-RM | 1788 | CG14039-PM | 100..1785 | 20..1705 | 8415 | 99.9 | Plus |
| qtc-RG | 1608 | CG14039-PG | 1..1604 | 17..1620 | 8005 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:42:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| qtc-RN | 1890 | CG14039-RN | 58..1746 | 17..1705 | 8430 | 99.9 | Plus |
| qtc-RM | 1948 | CG14039-RM | 157..1842 | 20..1705 | 8415 | 99.9 | Plus |
| qtc-RG | 2262 | CG14039-RG | 208..1811 | 17..1620 | 8005 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:42:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5067307..5068228 | 398..1319 | 4595 | 99.9 | Plus |
| 2L | 23513712 | 2L | 5066869..5067250 | 19..400 | 1910 | 100 | Plus |
| 2L | 23513712 | 2L | 5070097..5070299 | 1418..1620 | 1015 | 100 | Plus |
| 2L | 23513712 | 2L | 5068293..5068394 | 1316..1417 | 510 | 100 | Plus |
| 2L | 23513712 | 2L | 5070353..5070437 | 1621..1705 | 425 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 14:42:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2806..2985 | 32..214 | 222 | 60.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6700..6901 | 13..222 | 183 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6792..6902 | 32..140 | 171 | 65.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6807..6923 | 32..152 | 164 | 64.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6738..6917 | 32..214 | 159 | 58.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6771..6936 | 32..190 | 156 | 59.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2344..2399 | 32..87 | 154 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6901 | 50..228 | 154 | 58.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6759..6924 | 32..197 | 154 | 58.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1103..1156 | 37..90 | 153 | 75.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2291..2492 | 35..231 | 148 | 59.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6843..7037 | 32..232 | 144 | 55.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1039..1161 | 24..145 | 143 | 61.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1083..1137 | 32..86 | 140 | 72.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2439..2492 | 34..87 | 135 | 72.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2754..2967 | 23..229 | 134 | 56.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2419..2474 | 32..87 | 127 | 69.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2488 | 40..200 | 127 | 57.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2611..2808 | 32..229 | 127 | 56.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1533..1573 | 46..86 | 124 | 78 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 8617..8672 | 41..95 | 124 | 71.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2385..2426 | 46..87 | 120 | 76.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1072..1128 | 36..86 | 119 | 71.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2461..2540 | 32..110 | 118 | 62.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2599..2650 | 32..86 | 115 | 70.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6872..6944 | 40..109 | 115 | 64.4 | Plus |
BO35232.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-12-04 10:01:12 Download gff for
BO35232.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qtc-RN | 58..1746 | 17..1707 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:20:50 Download gff for
BO35232.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qtc-RN | 58..1746 | 17..1707 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:20:50 Download gff for
BO35232.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5066868..5067249 | 17..399 | 99 | -> | Plus |
| 2L | 5067309..5068227 | 400..1318 | 99 | -> | Plus |
| 2L | 5068296..5068394 | 1319..1417 | 100 | -> | Plus |
| 2L | 5070097..5070299 | 1418..1620 | 100 | -> | Plus |
| 2L | 5070353..5070437 | 1621..1707 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-12-04 10:01:12 Download gff for
BO35232.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5066868..5067249 | 17..399 | 99 | -> | Plus |
| arm_2L | 5067309..5068227 | 400..1318 | 99 | -> | Plus |
| arm_2L | 5068296..5068394 | 1319..1417 | 100 | -> | Plus |
| arm_2L | 5070097..5070299 | 1418..1620 | 100 | -> | Plus |
| arm_2L | 5070353..5070437 | 1621..1707 | 97 | | Plus |
BO35232.pep Sequence
Translation from 16 to 1723
> BO35232.pep
MSLQLNGGSDISSSGTSSSSSNNKESSPRTTRTPRTPQTPQTPQTPASGV
AASVAETPHSCIRQGNCVKANQVKLSTLHESKISPRTPPVTPDSPSTYLD
DDIDSMYSFATTTSGRSTMSCEHPYVARNGTTFSGRKMKYVVHCSNYAGQ
VGPDYLTPTQRAQRQIRRLKELLCIARQDLEQKDTELLRLTREVVELRLF
KASLSSPEERSASSDAVTVREAELKTSQDVSPIVDMVDEGNAKGSPRHLS
RQQQQQANHSLQAMQMSAEMQSSYADSGHFEDLTMSSVHSKDSQTQSEAC
GTATPDGEADVGCGAGGDSASNLENYELQRQELISMYEHRIEELIRSQDS
ATSDLKRSHNDKVEALLQKLAECNTRYSDMVPDYEQAKQRIRELEKQLED
LQRKLIEHEEKQNKMYLHMYQQGQEAERISRADQALDLAQRQPESKVSIN
ELLHQLQSTQDELENIRTIYRRLLEAQKNRTHVDPEVTLQFLKSAIFYFL
TDKENSQGHLQAIESILEFTDAEKQKISAANRTPKLHAKMSKTMSTILVR
AKLHCFQLIGWRHASFLDH
BO35232.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:49:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| qtc-PN | 563 | CG14039-PN | 1..563 | 1..563 | 2867 | 100 | Plus |
| qtc-PM | 595 | CG14039-PM | 34..595 | 2..563 | 2862 | 100 | Plus |
| qtc-PK | 594 | CG14039-PK | 1..594 | 1..563 | 2825 | 94.8 | Plus |
| qtc-PJ | 626 | CG14039-PJ | 34..626 | 2..563 | 2820 | 94.8 | Plus |
| qtc-PG | 535 | CG14039-PG | 1..535 | 1..535 | 2717 | 100 | Plus |
