BO35235.complete Sequence
3442 bp assembled on 2014-07-17
GenBank Submission: KX794188
> BO35235.complete
GAAGTTATCAGTCGACATGGTACGTCAGCAGAAGACCAGCAAGTCCACAA
GCTTATCGAAGCCCACTCCAATTGCCCAGAAGCCCAAGCCAATTGCCCAG
AAGCACACTCACGGCAATAAGTACCACTACCAGCAACGGAATAAGCAGCC
GAATCATCAGCCGGATCAAGAAATAGGAAGAGCAGCTAAGTGTGAGAATC
AGGCTATAGCCGAGCATAAACAAGATCTAACGGGCATCATAACCCAAGAG
CTGTTTGAAAGTTTCAATAATATTCAAGGTCCGTTTTCGGAAAACCTGCA
GGTTTTCAACAAAAATCCAGAATATATCACAAGGCGAAAGAAAGAGCTTA
AGAAAGAAGACGATCTAGATCGTGGTCAAATAACGAAGGAAGTCGCTAGG
GAAAAACAGAAGGAAAAAGAAACCCGCGATCGGGCTGTGACGGAAACGAT
CTTCGTAACAATTGAGAACAAAAAGGCACCAGTCATGAATGGACATGGAC
CAAGGCACGTTAAAGTGGCTAACGGACAAGACAAACACAATGACGGCAAA
CCTCCGCTGCGTGCCATACTGGGCAACAGTGCTTCGCAGCGCCAGCAAGA
TACAAGCACCGTCTATCACAGCCCTGAATCCTCATTCAAGCGGCCACGTC
ATCCGCGAGTAATGTACCCTGGTCACCAGCGCACCACGGGCGTCTCTGTG
AATCACAGATTGAAAGTAACGCCGCAATCGGATGCACCCACGCCAGCGGT
AGCGCCCATCACGCCGCCAGCTTCGCCGGAATACGCTCAAACGACAACCG
CCGCTAAAGCGACGTACAAAGAAGATATCCACGGAGGTCAAGGTGAAACA
GGCAATGTCGTTACAAATCCAAAAGTTAAGGTGCCACTTAAATTCGATCC
CTCACTTGATCCCGTCTCCACGCTCAACTTCTATTGCGCGGCAAATGACT
TTGAGAAACCTGCATACAACATATTCAACAAGCTACGGAACCTACATTGT
TCAGTGCAAATCGCTGGCGATGTTTACAGTAGCTATCCGCAGGAGTTCAC
CGATAAGGAGACAGCATACCAACGCACAGCACAGATCGCCATCCAGCGCA
TCATGCATGCCCAGTCACACCAAAAGCTTTCTGCTTGCACATTTAGCGAT
GTGGAGTTTATCGATGGATTGTACAAGGAGCTGTTAAAGCACCCACATGG
CATATTGGGTCACAAGCTGGAGGATTGGTACGGCAGCACCTTCCGGCAAC
ATCTGCCCAGTCATTGGTACGATTTGATCGTGAAGTCAAATAAAATTCGT
GTTGAGCACGGCATTGATCCAAGGATCATATTGTTTGCCAACGATCCTGG
TTCATCGGAGCCGGACCGCACCAGCATAACCACCCTGCCACAGATGGTGC
TGCCGTGGCAGTCAAGCGAAGGAGGATCGCACGACTGGAACATGTTCATC
AGCTTCTGCGACTCCACCAAGATAGTGTGGGCTCGGATGATCGATCAGAT
CGCAAACTTTGAGGAACTGACGAAGCATATTGGACGCCAAATGGAGTCTC
CGCATTTCCGACAAAAGGTCTCTAAACCTTACGCTCAGGAAGTCTATTTA
GTGGAGATGCCCGATGGCTGGAATCGTGTTCGTGCAATTTCTGTGGATGA
GGAGACCCGCTCGGGCCGTTATCACTTTATCGACTTTGGCGATGTGGCAA
TGTTTCATTCAGAAGATCTCTTCCACTGTCCACCGCAGTTCTTGGCGCTC
CCGGCCCAGGCCGTGTGCCTCAGCATGTATGCGTTGGATAAGTTCGAGGA
TCATCCGCACGCTCTGCAGGTTTTAACAAAGGAGCTGGACGGCCAGACGG
TTGTGGCCCATGTGCTCACCACGGAGAAGCAGTTCCTGGAACTGGGTGGA
TCTGCCCAGGGTGTGGTGGAGAACGGTAAGCGTCGGGCGTGCTTGGTGGC
CACGCTGTACGACACCTCAACGGCTGAGGACATTCATCTGAACGATCTGG
TTGCGAAAAGAATAACGAAGTGCACGCCGGCACCATCGCTGAGTGATGAA
AAGAAGATCGGCAAGACCACGCCCATTCTTGTGTCTCACATCAACGATGA
TGGTGATCTAATGGTGCTGCTACGCAATGATGACCTTAAGTTTGTGGAGC
GCAGTATTGCGCAAACTGTGGCTGATTTGGGCGAGCAGGACCGAGTGAGC
TATTCGGATCTGCTCCACGACCGCCATATATTCGTGTGCGACGAGACTGT
CGATGGCGTCAAGCAGTGGTTCCGCGGGCGACTGGTCACCAGACCACTGA
ATCCGGACGAAGAGTCCTTCGATGTCTACTACGTGGACGATGGACGGCAG
CGTAAGGCGCACATCTCTAATATCTACCGCCTGGAGGCAAACAACAGAGC
TCTGGCTACGTTCCCGCCACAGGCGATACCCGTTCGCCTGCACGACGTTC
CAGAGATCGGAGGTCATATGCTTCATCGCCTGCGTGGTCTGATACCTTGG
CGCACCGAAGCTCTCCTGAAGGTTGTGGCCATGGATGGTGGTAAGCCTCT
GGTAAACGTATTCATCCGCGAGGATCCGGAGTCCATGTATATGTGCGTGA
ACATTGGCCTTCGCCTGGAGCTCGAGATGGCTAGCTCCATTCATCCGGAG
AAGTATGATCATACGCTCCTGAGCTCCAATGTCCAGCTGCCCAGACGCGG
TAGCTTCAGCTCCGTGTTCTCGAATCAGAGCAGCAGCAGCGACCTTGTCG
CTACCACTCCCCCGGTGACGCCAGAGAAGAAACCATCCGCAAGATCGACC
GGCAGCACCTTTTCGTCTCTCATGCTCAAGGATTACGAGGCTATTCCGGC
AGTGGGTGCCTATTTCGAGGTGCGCGTTGCCCTCTCCGTCAATCCCGGTC
ACTTTGCGGTGCAACCGTACAAATACTATAACCAGCTGCAGACTTTGATG
AAGAATTTACAAGAGCATTGCCAAAAGACGGCAGCCAAGGGAGTGCAGCC
TTCACAACTGGCCATTGGAGAGGCCTACGCTGCCCCTGACTCCGAAGGCG
TATATCATCGCGTAAGTATTCACAAGATTTACGATGAGATTATACACGTG
CGTTTCGTCGACGTGGGCGACGATGGAGTAATTGCCTGTGATCAACTGAA
AACTCTAAATCCGGAGTTAAGAAAGCTGCCCAAGATGGCATTGCCAGCAC
AACTTTATGGCATACAACTGACTGATGTAGTATGGAGCAAGGAGAACTGC
GTCCGATTCCGGGAACTGTCGCTGGGTCAGAAGTTTATTGGCATTGTGCG
GCGAATGACTAAACAAAAGGATGGCGGACGAGCGCTGTGCCTGGAGCTGG
TGGACACCTCCACGCCGAAAGATATTAAGCTGCACGAGATTCTCATCAAT
GAGAAGCACGCACAGCCAGCAACAGCAAGCTTTCTAGACCAT
BO35235.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:13:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8920-RF | 3411 | CG8920-PF | 1..3408 | 17..3424 | 17040 | 100 | Plus |
| CG8920-RB | 3669 | CG8920-PB | 259..3666 | 17..3424 | 17040 | 100 | Plus |
| CG8920-RD | 2898 | CG8920-PD | 259..2880 | 17..2638 | 13110 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:13:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8920-RF | 3753 | CG8920-RF | 183..3590 | 17..3424 | 17040 | 100 | Plus |
| CG8920-RB | 4005 | CG8920-RB | 435..3842 | 17..3424 | 17040 | 100 | Plus |
| CG8920-RD | 3272 | CG8920-RD | 435..3056 | 17..2638 | 13110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:13:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20321726..20324224 | 17..2515 | 12495 | 100 | Plus |
| 2R | 25286936 | 2R | 20324846..20325123 | 2633..2910 | 1390 | 100 | Plus |
| 2R | 25286936 | 2R | 20325595..20325810 | 3209..3424 | 1080 | 100 | Plus |
| 2R | 25286936 | 2R | 20325178..20325330 | 2908..3060 | 765 | 100 | Plus |
| 2R | 25286936 | 2R | 20325388..20325540 | 3060..3212 | 765 | 100 | Plus |
| 2R | 25286936 | 2R | 20324293..20324411 | 2516..2634 | 595 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 15:13:41 has no hits.
BO35235.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-17 10:54:32 Download gff for
BO35235.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8920-RB | 435..3842 | 17..3426 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:34:10 Download gff for
BO35235.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8920-RB | 435..3842 | 17..3426 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:34:10 Download gff for
BO35235.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20324848..20325121 | 2635..2908 | 100 | -> | Plus |
| 2R | 20325179..20325330 | 2909..3060 | 100 | -> | Plus |
| 2R | 20321726..20324224 | 17..2515 | 100 | -> | Plus |
| 2R | 20324293..20324411 | 2516..2634 | 100 | -> | Plus |
| 2R | 20325389..20325537 | 3061..3209 | 100 | -> | Plus |
| 2R | 20325596..20325810 | 3210..3426 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-17 10:54:32 Download gff for
BO35235.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16209231..16211729 | 17..2515 | 100 | -> | Plus |
| arm_2R | 16211798..16211916 | 2516..2634 | 100 | -> | Plus |
| arm_2R | 16212353..16212626 | 2635..2908 | 100 | -> | Plus |
| arm_2R | 16212684..16212835 | 2909..3060 | 100 | -> | Plus |
| arm_2R | 16212894..16213042 | 3061..3209 | 100 | -> | Plus |
| arm_2R | 16213101..16213315 | 3210..3426 | 99 | | Plus |
BO35235.pep Sequence
Translation from 16 to 3442
> BO35235.pep
MVRQQKTSKSTSLSKPTPIAQKPKPIAQKHTHGNKYHYQQRNKQPNHQPD
QEIGRAAKCENQAIAEHKQDLTGIITQELFESFNNIQGPFSENLQVFNKN
PEYITRRKKELKKEDDLDRGQITKEVAREKQKEKETRDRAVTETIFVTIE
NKKAPVMNGHGPRHVKVANGQDKHNDGKPPLRAILGNSASQRQQDTSTVY
HSPESSFKRPRHPRVMYPGHQRTTGVSVNHRLKVTPQSDAPTPAVAPITP
PASPEYAQTTTAAKATYKEDIHGGQGETGNVVTNPKVKVPLKFDPSLDPV
STLNFYCAANDFEKPAYNIFNKLRNLHCSVQIAGDVYSSYPQEFTDKETA
YQRTAQIAIQRIMHAQSHQKLSACTFSDVEFIDGLYKELLKHPHGILGHK
LEDWYGSTFRQHLPSHWYDLIVKSNKIRVEHGIDPRIILFANDPGSSEPD
RTSITTLPQMVLPWQSSEGGSHDWNMFISFCDSTKIVWARMIDQIANFEE
LTKHIGRQMESPHFRQKVSKPYAQEVYLVEMPDGWNRVRAISVDEETRSG
RYHFIDFGDVAMFHSEDLFHCPPQFLALPAQAVCLSMYALDKFEDHPHAL
QVLTKELDGQTVVAHVLTTEKQFLELGGSAQGVVENGKRRACLVATLYDT
STAEDIHLNDLVAKRITKCTPAPSLSDEKKIGKTTPILVSHINDDGDLMV
LLRNDDLKFVERSIAQTVADLGEQDRVSYSDLLHDRHIFVCDETVDGVKQ
WFRGRLVTRPLNPDEESFDVYYVDDGRQRKAHISNIYRLEANNRALATFP
PQAIPVRLHDVPEIGGHMLHRLRGLIPWRTEALLKVVAMDGGKPLVNVFI
REDPESMYMCVNIGLRLELEMASSIHPEKYDHTLLSSNVQLPRRGSFSSV
FSNQSSSSDLVATTPPVTPEKKPSARSTGSTFSSLMLKDYEAIPAVGAYF
EVRVALSVNPGHFAVQPYKYYNQLQTLMKNLQEHCQKTAAKGVQPSQLAI
GEAYAAPDSEGVYHRVSIHKIYDEIIHVRFVDVGDDGVIACDQLKTLNPE
LRKLPKMALPAQLYGIQLTDVVWSKENCVRFRELSLGQKFIGIVRRMTKQ
KDGGRALCLELVDTSTPKDIKLHEILINEKHAQPATASFLDH
BO35235.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:10:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8920-PF | 1136 | CG8920-PF | 1..1136 | 1..1136 | 5981 | 100 | Plus |
| CG8920-PB | 1222 | CG8920-PB | 87..1222 | 1..1136 | 5981 | 100 | Plus |
| CG8920-PD | 965 | CG8920-PD | 87..962 | 1..876 | 4631 | 99.8 | Plus |
| CG8920-PA | 879 | CG8920-PA | 1..876 | 1..876 | 4631 | 99.8 | Plus |
