BO35278.complete Sequence
2104 bp assembled on 2014-03-03
GenBank Submission: KX796158
> BO35278.complete
GAAGTTATCAGTCGACATGTCAGAGAACAAGGACGAGGCCTTGACCAGTT
TTCAGAGCATTACGGGCATCGACGATGTGGGCGAAGCCTTTTCCCACTTG
GAGGCCGCCGACTGGAATCTTGTGGAGGCTCTAAGTCGCGTGATCCCGCA
CGAGGATGCGCCGCTGACCAGTCCCCATCCTATCCTGGTGCCAGAGCCAC
CGGCCAGGAATGCCGTGGAGAGCACGAATGGCTTCCGTCCGCCTGGCTTT
GATGAAATGCCCGGGACTTCTAACGCGTCCGGTTTCTTTGCGGCCGCCCT
TCAAAACCAGAACCAAAACCTAAACCTAAATCAGCCGCACATCCAGCAAA
GATTTCCAACCCAGCTGACGTCCAGTATCAACCTGGACCCCGCGTCCAGC
CAAAACAACAACCAAAACGTGATCACCTTCAACATCCACTTTAACCAGCA
GCTCTACCAGCTCCGTTTACCATCGGAGGCCACAGTTGAACAACTTAAAC
GCAAAATCTTTGCCGAGACAAGTGTGCCTGTGTGCAGGCAAGCCATTCGC
GGCTGGCCACCCTCCAAAGCCAGCGATGCACAGCAGCTGGGCACTCGTTT
ATGCAACCTAGATCTCTCCCCGGAGAATGAACTGATCCTGGTGGACCTCA
CCGAAGACGGTTTCATGGACACCGAACAGGATGAAGTGACGCAGCGCGTG
GACAAGGACTTCACCATTTTCATACAGTTCGAATCGGACCCACCACTCAC
TCTTAGCCTGCCAGGACGTATGACAGTGCAAGAGGTAAAGATGAACGTGT
TCGACATCAAGAGCATACCAGTGCGCCACCAGGAGTGGACCGGCTGGCCC
AACGGTTGTGACAATGACACCACTCTGGCGCAATCTGGCATTGGGCTCTC
GCATAGATTCGCTGTTCGCAGCACGGAACGATCAGCGCCAACAAATTCCA
ATCAGCACAACGCATTCGATGTGGTGACCGTGGACAGTGAGAGCTCGACA
GATGAGTTCGAAGATGCCACAGACTTCAACAACGCCGAGTACATATTTAC
TGACTCGCCACCCGCTCAGCCCCCCAACAGACACTTAATACCAAACGATA
CGGATGATGAGATAAGTGGCTCCACGCAGTTTGTCGAGAACTACAAGGCG
CGTTATGGCGAGCCCTGTCCCGAATTTTTTGTGGGCAGCCTTGAAAACGC
CAAGCAGCTGGCCTGCCTTCGATCCGCCAAGGAGCGCAAGCTGTTGGCCA
TTTACTTGCATCACGGCAAGAGCATTCTCAGCAACGTTTTCTGTGATCAA
CTGATGAAACATGAGAGCATTATACAAACTTTCAAAGAGAAGTTTGTTTT
ATATGGCTGGGATATGACCTACGAGAGCAACAAGGACATGTTTCTCTCCT
CGTTGACGGCCTGCATTAGCAGCAACGCCTCTCTGACGGCCAGAAACATT
AAATTGGACAAGCTGCCAGCCATCATGTTGGTTGGAAAAAGCCGCCAGCT
GGGCAGCAATTGCGAAGTTTTATCTGTGATTCATGGTAACATTGGTCTGG
ATGACTTGCTTACGAGGCTGATTGAAACATGCGAAATGTTTGAGGAGCAG
CTTCAGGTGGAAATACGGCAAGAGGACGAACGCGCTGCCCGTGATCAGGT
GAAGGCAGAGCAGGACATGGCCTATCAGGAAACTTTGCAAGCCGACATGG
CTAAGGATGCGGCAAAGCGCCAGAAGGAGGCTGCACAATTGGCCGAGCGA
AAACGAATGGAGTCCGAGCGGGCCGAAGAAGATGCTAGACGCGAGTCCAT
CAGATTAGTTGCTCAACAATCCCTACCTCAGGAGCCGTCCGAACAGGAAA
CGGGGACTTCAAAGATCCGAGTGCGTAAGCCCACTGGCGATTTTCTGGAG
CGCCGTTTTTTCATCAACAACAACCTACAGGATCTGCTCAACTTTGTGAC
GGCCAATGGTTTCCTCATCGAGGAGTACAAGCTAATCAGCAGCTGGCCGC
GTCGCGATCTTACGGCCATCGAGAGTAGCCAAACATTGGAGTCGCTCAAG
CTGTATCCGCAGGAAACGGTCATCCTGGAGGAGCGAGCAAGCTTTCTAGA
CCAT
BO35278.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:02:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| casp-RC | 2073 | CG8400-PC | 1..2070 | 17..2086 | 10350 | 100 | Plus |
| casp-RB | 2088 | CG8400-PB | 1..2085 | 17..2086 | 10165 | 99.3 | Plus |
| casp-RA | 2088 | CG8400-PA | 1..2085 | 17..2086 | 10165 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:02:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| casp-RC | 2542 | CG8400-RC | 122..2191 | 17..2086 | 10350 | 100 | Plus |
| casp-RB | 2557 | CG8400-RB | 122..2206 | 17..2086 | 10165 | 99.3 | Plus |
| casp-RA | 2557 | CG8400-RA | 122..2206 | 17..2086 | 10165 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:02:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16025372..16025648 | 1811..1535 | 1385 | 100 | Minus |
| 2R | 25286936 | 2R | 16027337..16027572 | 359..124 | 1180 | 100 | Minus |
| 2R | 25286936 | 2R | 16026339..16026547 | 1088..880 | 1045 | 100 | Minus |
| 2R | 25286936 | 2R | 16026611..16026812 | 880..679 | 1010 | 100 | Minus |
| 2R | 25286936 | 2R | 16026866..16027057 | 679..488 | 960 | 100 | Minus |
| 2R | 25286936 | 2R | 16024979..16025137 | 2086..1928 | 795 | 100 | Minus |
| 2R | 25286936 | 2R | 16025911..16026069 | 1391..1233 | 795 | 100 | Minus |
| 2R | 25286936 | 2R | 16025706..16025854 | 1538..1390 | 745 | 100 | Minus |
| 2R | 25286936 | 2R | 16026135..16026280 | 1234..1089 | 730 | 100 | Minus |
| 2R | 25286936 | 2R | 16027135..16027263 | 488..360 | 645 | 100 | Minus |
| 2R | 25286936 | 2R | 16025190..16025310 | 1931..1811 | 605 | 100 | Minus |
| 2R | 25286936 | 2R | 16027664..16027736 | 125..53 | 365 | 100 | Minus |
| 2R | 25286936 | 2R | 16027884..16027922 | 55..17 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 15:02:09 has no hits.
BO35278.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-03-03 17:25:05 Download gff for
BO35278.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| casp-RC | 122..2191 | 17..2088 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:29:52 Download gff for
BO35278.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| casp-RC | 122..2191 | 17..2088 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:29:52 Download gff for
BO35278.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16026339..16026546 | 881..1088 | 100 | <- | Minus |
| 2R | 16026611..16026812 | 679..880 | 100 | <- | Minus |
| 2R | 16026867..16027056 | 489..678 | 100 | <- | Minus |
| 2R | 16027135..16027263 | 360..488 | 100 | <- | Minus |
| 2R | 16027337..16027571 | 125..359 | 100 | <- | Minus |
| 2R | 16027665..16027733 | 56..124 | 100 | <- | Minus |
| 2R | 16027884..16027922 | 17..55 | 100 | | Minus |
| 2R | 16025913..16026067 | 1235..1389 | 100 | <- | Minus |
| 2R | 16026135..16026280 | 1089..1234 | 100 | <- | Minus |
| 2R | 16024976..16025134 | 1931..2088 | 98 | <- | Minus |
| 2R | 16025191..16025310 | 1811..1930 | 100 | <- | Minus |
| 2R | 16025373..16025647 | 1536..1810 | 100 | <- | Minus |
| 2R | 16025709..16025854 | 1390..1535 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-03-03 17:25:05 Download gff for
BO35278.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11913844..11914051 | 881..1088 | 100 | <- | Minus |
| arm_2R | 11914116..11914317 | 679..880 | 100 | <- | Minus |
| arm_2R | 11913418..11913572 | 1235..1389 | 100 | <- | Minus |
| arm_2R | 11913640..11913785 | 1089..1234 | 100 | <- | Minus |
| arm_2R | 11912481..11912639 | 1931..2088 | 98 | <- | Minus |
| arm_2R | 11912696..11912815 | 1811..1930 | 100 | <- | Minus |
| arm_2R | 11912878..11913152 | 1536..1810 | 100 | <- | Minus |
| arm_2R | 11913214..11913359 | 1390..1535 | 100 | <- | Minus |
| arm_2R | 11914372..11914561 | 489..678 | 100 | <- | Minus |
| arm_2R | 11914640..11914768 | 360..488 | 100 | <- | Minus |
| arm_2R | 11914842..11915076 | 125..359 | 100 | <- | Minus |
| arm_2R | 11915170..11915238 | 56..124 | 100 | <- | Minus |
| arm_2R | 11915389..11915427 | 17..55 | 100 | | Minus |
BO35278.pep Sequence
Translation from 16 to 2104
> BO35278.pep
MSENKDEALTSFQSITGIDDVGEAFSHLEAADWNLVEALSRVIPHEDAPL
TSPHPILVPEPPARNAVESTNGFRPPGFDEMPGTSNASGFFAAALQNQNQ
NLNLNQPHIQQRFPTQLTSSINLDPASSQNNNQNVITFNIHFNQQLYQLR
LPSEATVEQLKRKIFAETSVPVCRQAIRGWPPSKASDAQQLGTRLCNLDL
SPENELILVDLTEDGFMDTEQDEVTQRVDKDFTIFIQFESDPPLTLSLPG
RMTVQEVKMNVFDIKSIPVRHQEWTGWPNGCDNDTTLAQSGIGLSHRFAV
RSTERSAPTNSNQHNAFDVVTVDSESSTDEFEDATDFNNAEYIFTDSPPA
QPPNRHLIPNDTDDEISGSTQFVENYKARYGEPCPEFFVGSLENAKQLAC
LRSAKERKLLAIYLHHGKSILSNVFCDQLMKHESIIQTFKEKFVLYGWDM
TYESNKDMFLSSLTACISSNASLTARNIKLDKLPAIMLVGKSRQLGSNCE
VLSVIHGNIGLDDLLTRLIETCEMFEEQLQVEIRQEDERAARDQVKAEQD
MAYQETLQADMAKDAAKRQKEAAQLAERKRMESERAEEDARRESIRLVAQ
QSLPQEPSEQETGTSKIRVRKPTGDFLERRFFINNNLQDLLNFVTANGFL
IEEYKLISSWPRRDLTAIESSQTLESLKLYPQETVILEERASFLDH
BO35278.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:01:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| casp-PC | 690 | CG8400-PC | 1..690 | 1..690 | 3558 | 100 | Plus |
| casp-PB | 695 | CG8400-PB | 1..695 | 1..690 | 3542 | 99.3 | Plus |
| casp-PA | 695 | CG8400-PA | 1..695 | 1..690 | 3542 | 99.3 | Plus |
| Faf-PB | 464 | CG10372-PB | 141..423 | 364..665 | 194 | 23.5 | Plus |
| Faf-PA | 464 | CG10372-PA | 141..423 | 364..665 | 194 | 23.5 | Plus |
