BO35348.complete Sequence
826 bp assembled on 2015-03-10
GenBank Submission: KX799323
> BO35348.complete
GAAGTTATCAGTCGACATGGCGTTCACCAAGGTTCTCCAATTGATTCTCC
TAGCTGTGGTTGCCATTTCCTCTGCCGTCGACTATTGTGCTCTCCCCACC
TGTCTGGACAAGCATGTGGCCTGTAACAACAAGGGAAACTTCAGTGAAAA
TTGTCCCAAAGACGTGCGTGAGGTGAAGATCGAGCCGCATCACAAACTCA
TCCTCAATCTCTTCAACGAGTTGCGCAACAACGTGGCTGGAGGCAAAATA
GAAGGACTACCCAAGGCTGTTCGCATGGCCAAGATGTCCTGGTGCGAGGA
GCTCTCCCATCTGGCCTTGCTGAACGTAAAGACCTGTGAGTCCCTGCCAG
ATAAATGTCGCAGCACCGAGAGATTCGCCTACGCCGGCCAGAACAACGCC
TTGTTCCAGTACAGCGGAGCCGAGACAGAGTACACCGATGCGGAAATAAT
AAAGGAGGAGATCGAGAACTGGTTTGCTGAGCGCTCGAATGCATCTCCCG
AGATCCTCGCCAGCTTCCCGGAGGAGCTTCCCAACAAAGCGGTGACCAAG
TTCACCATCGCGGTGGCCGAGAAGAACACCCATGTGGGATGTGCCGCGGT
GCGCTTCTCCCGGGACTTTTACAACCACTTCGTACTCACCTGCAACTTCG
CCACATCGAACATTGTGGGTCAGCCTGTCTACACTCCGGGAGAGAAGGCA
ACCACCGGCTGCAAGAACCGATATGGAGCTGCCTACGATTACCCCAATCT
GTGCTACGCCAAGGAGATCTACGACAACGAGAAGGTCATCGAGAACACAC
AGACGATGGCAAGCTTTCTAGACCAT
BO35348.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2015-03-10 14:05:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scpr-A-RA | 795 | CG5207-PA | 1..792 | 17..808 | 3840 | 99 | Plus |
| scpr-B-RA | 789 | CG17210-PA | 58..786 | 80..808 | 3420 | 97.9 | Plus |
| scpr-C-RB | 789 | CG5106-PB | 58..786 | 80..808 | 3375 | 97.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-03-10 14:05:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scpr-A-RA | 873 | CG5207-RA | 13..805 | 16..808 | 3845 | 99 | Plus |
| scpr-B-RA | 898 | CG17210-RA | 70..798 | 80..808 | 3420 | 97.9 | Plus |
| scpr-C-RB | 1109 | CG5106-RB | 74..802 | 80..808 | 3375 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-03-10 14:05:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11240141..11240809 | 808..140 | 3240 | 99 | Minus |
| 3R | 32079331 | 3R | 11241381..11242052 | 137..808 | 3240 | 98.8 | Plus |
| 3R | 32079331 | 3R | 11225706..11226374 | 140..808 | 3195 | 98.5 | Plus |
| 3R | 32079331 | 3R | 11241195..11241315 | 16..136 | 605 | 100 | Plus |
Blast to na_te.dros performed on 2015-03-10 14:05:52 has no hits.
BO35348.complete Sim4 Records
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-03-10 14:09:55 Download gff for
BO35348.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scpr-A-RA | 14..805 | 17..810 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-03-10 14:09:55 Download gff for
BO35348.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11241196..11241315 | 17..136 | 100 | -> | Plus |
| 3R | 11241381..11242052 | 137..810 | 98 | | Plus |
BO35348.pep Sequence
Translation from 16 to 826
> BO35348.pep
MAFTKVLQLILLAVVAISSAVDYCALPTCLDKHVACNNKGNFSENCPKDV
REVKIEPHHKLILNLFNELRNNVAGGKIEGLPKAVRMAKMSWCEELSHLA
LLNVKTCESLPDKCRSTERFAYAGQNNALFQYSGAETEYTDAEIIKEEIE
NWFAERSNASPEILASFPEELPNKAVTKFTIAVAEKNTHVGCAAVRFSRD
FYNHFVLTCNFATSNIVGQPVYTPGEKATTGCKNRYGAAYDYPNLCYAKE
IYDNEKVIENTQTMASFLDH
BO35348.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2015-03-10 14:05:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scpr-A-PA | 264 | CG5207-PA | 1..264 | 1..264 | 1398 | 100 | Plus |
| scpr-B-PA | 262 | CG17210-PA | 7..262 | 9..264 | 1324 | 95.7 | Plus |
| scpr-C-PB | 262 | CG5106-PB | 7..262 | 9..264 | 1321 | 95.3 | Plus |
| scpr-C-PA | 262 | CG5106-PA | 7..262 | 9..264 | 1321 | 95.3 | Plus |
| Ag5r2-PA | 254 | CG9540-PA | 5..250 | 7..253 | 414 | 34.8 | Plus |
