Clone BO35471 Report

Search the DGRC for BO35471

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:354
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptCG5653-RA
Protein status:BO35471.pep: Imported from assembly
Sequenced Size:1462

Clone Sequence Records

BO35471.complete Sequence

1462 bp assembled on 2015-03-10

GenBank Submission: KX794315

> BO35471.complete
GAAGTTATCAGTCGACATGGAAAAATGCCGTGCCTCCTCTAGGATAATCA
TAATCGGAGCAGGAGTTTCGGGCATAGCCGCCGCCACTCGACTCCTGCAA
AACAATTTCCAGAATGTTCAGATCCTGGAGGCGGAGGATCGCATTGGCGG
GCGGATCAACACCGTGTATTTTGGTGACAACGTCATCGATTTGGGAGCCC
AGTGGTGTCATGGAAAGCAGCAAAATTGTGTATACGACATGGTCAAGGAT
ATGGGTATCCTGCACGAGACAGGCGACTATTACAGTCCCATAAAGAGGGT
GAGATCCAACAAGGAGGTGGTTCCACATGAGTTGGCCTGCAGGATACACG
ACATTGCTGTGAAGAGCATGCCGAGTGGACCTCACCCGGTTGTGGGATCC
TTTGGCACCCACCTGACTCAGACCTTCTGGCGCAAGATCGAGTCCGAGCT
ACCCCAAGTGAATAGGGATGTGGCTAGTGAGGCCTTGAATACATTTGCGA
AGCATGAAAGCTCTATTATCGGTGCGGACAATCTTTTCGAGGTCTCCGTT
AGGGAACACATCGAGTACCACGAATGTGATGGCGACAAGCTGCTCCACTG
GGGAACGAAGGGTTACCGGCGCTTCCTGCGGCTGCTGATGAAGGTCAGCG
CGGATACGCCAGAAGAGCTGGGACTACTGGAAGGACGTATTCAACTTGAT
ATGAAGGTCATCAAGATTGAGTTGGCGTGCCCCCGTAAGGTAATCCTGCG
CTGCCAGGATGGGGATTACTTCGAGGCGGACCACGTCATCTGCACCGTTT
CCCTGGGAGTCCTGCAGGAGCAGCACGAGAAACTGTTCGTCCCGCCGCTG
CCCGCAGCCAAGGTGAATGCCATTCGCAGCCTCACCCTAGGCACTGTGAA
CAAACTGTATTTGGAGTATGAGAAGCAACCTCTTCCTGACGGCTGGGTGG
GTTTCTTCTGTTTTTGGCTGGAAGAGGATCTGATAGAGCTGCGAAAGACG
GAATATTTTTGGGTGGAGGGTATAACCGGTGTACACATGATCACTTGTCA
GCCCCGAATGTTGATGGCCTGGGTGAATGGTCCGCATGGACGCCACATGG
AGACCCTGTCCGATGAGAAAGTCCTTGAGGGCTTGTACTGGCTTTTCCGA
AAGTTCCTCACTTTCGAAATTCCGCCGCCAAAGCGTTTCGTTCGCAGCTC
GTGGTTTTCGAATCCGAATTTCCGTGGCAGTTGGAGTTATCGTGGAGTTA
TGGCCGATGAAAGGAATACGGGCCCCTGGGATCTAGAGTCTCCTGTGTTG
GGCGAAGATGGTCATTTAGGCCTCCTTTTTGCCGGAGAAGCGTCTAGCAG
GAATCACTTTTCCACCGTTCACGGAGCTGTGGAGGCGGGCTATCGGGAGG
CAGACCGGCTCATTGATCATTACACCTCATGCAGTGTCAGTGCCGCAAGC
TTTCTAGACCAT

BO35471.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2015-03-10 14:06:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG5653-RA 1431 CG5653-PA 1..1428 17..1444 7050 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-03-10 14:07:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG5653-RA 1463 CG5653-RA 13..1440 17..1444 7050 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-03-10 14:06:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8964935..8966362 1444..17 7050 99.6 Minus
Blast to na_te.dros performed on 2015-03-10 14:06:58 has no hits.

BO35471.complete Sim4 Records

Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-03-10 14:10:35 Download gff for BO35471.complete
Subject Subject Range Query Range Percent Splice Strand
CG5653-RA 13..1440 17..1446 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-03-10 14:10:35 Download gff for BO35471.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8964932..8966362 17..1446 99   Minus

BO35471.pep Sequence

Translation from 16 to 1462

> BO35471.pep
MEKCRASSRIIIIGAGVSGIAAATRLLQNNFQNVQILEAEDRIGGRINTV
YFGDNVIDLGAQWCHGKQQNCVYDMVKDMGILHETGDYYSPIKRVRSNKE
VVPHELACRIHDIAVKSMPSGPHPVVGSFGTHLTQTFWRKIESELPQVNR
DVASEALNTFAKHESSIIGADNLFEVSVREHIEYHECDGDKLLHWGTKGY
RRFLRLLMKVSADTPEELGLLEGRIQLDMKVIKIELACPRKVILRCQDGD
YFEADHVICTVSLGVLQEQHEKLFVPPLPAAKVNAIRSLTLGTVNKLYLE
YEKQPLPDGWVGFFCFWLEEDLIELRKTEYFWVEGITGVHMITCQPRMLM
AWVNGPHGRHMETLSDEKVLEGLYWLFRKFLTFEIPPPKRFVRSSWFSNP
NFRGSWSYRGVMADERNTGPWDLESPVLGEDGHLGLLFAGEASSRNHFST
VHGAVEAGYREADRLIDHYTSCSVSAASFLDH

BO35471.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2015-03-10 14:06:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG5653-PA 476 CG5653-PA 1..476 1..476 2552 100 Plus
CG7460-PC 486 CG7460-PC 9..479 1..469 1307 51.9 Plus
CG7460-PB 486 CG7460-PB 9..479 1..469 1307 51.9 Plus
CG6034-PA 479 CG6034-PA 12..473 3..469 1167 48.3 Plus
CG7737-PA 509 CG7737-PA 11..496 9..469 984 43.3 Plus