BO35484.complete Sequence
952 bp assembled on 2015-03-10
GenBank Submission: KX794128
> BO35484.complete
GAAGTTATCAGTCGACATGACACAAATGTCATACAAGGTTGAAGCTGTTC
CCGATTCCTACGCCGCCCTGGGCGAGGGACCCCACTGGGATGTTGATCGC
CAGAGTCTGTACTACGTGGACCTCGAATCCGCCGGCATTAATCGTTATGA
TTTCAAGCAGAACAAAGTGTACAGGGCTAAAATCGAGGGCGAGATATTTG
CATCGTTCATTCTGCCGGTTGAGAACAAACCGCAGGAGTTTGCCGTAGGA
TGCGGTCTTCGTACGGTCATCGTCCAGTGGGATGGAGTCTCCGCAGTGGC
CAAGGTCACTCGCACCCTGTTCGAGGTGCAGCCGGACCTGAAGGAAAACC
GCCTTAATGATGCCAAAACCGATCCCAATGGCCGTTTTTACGGTGGCACC
ATGGCCGACAGTGGCGACATATTCACCCAATGGAAGGGTGAGCTCTACAG
CTGGCAGGCCGGTGGACAGCCCAACGCTATCCGTAGCAAGGTGGGCATAT
CCAATGGCCTGGCCTGGGATGTCAAGGCCAAGAAGTTCTACTTCATCGAC
ACCAACAACCACGAGGTATTGGCCTATGACTACAATCAGAGCACCGGCGC
CGTAAGCAACCCAAAGGTCATCTTCGATCTGAGGAAGATTCGGCCCGAAG
GACCATTGTTCCCTGATGGCATGACCGTAGACACCGATGGCAATATCTAC
GTGGCCACCTTCAATGGTGGCACCGTCTTCAAGGTCAATCCAAGCACCGG
TAAAATTCTGCTGGAGATCAAAATTCCAACCACCCAAATCACCTCGGTGG
CTTTTGGAGGTCCCAATTTGGATATTTTGTATGTGACAACCGCCAACAAG
TTCGACCAGCCAAAACCAGCTGGTACCACCTTCCAGGTCACTGGGCTCAA
TGCCAAGGGTTACGCCGGCGTTAATTTGAAGATCGCAAGCTTTCTAGACC
AT
BO35484.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2015-03-10 14:07:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
smp-30-RC | 921 | CG7390-PC | 1..918 | 17..934 | 4590 | 100 | Plus |
smp-30-RD | 912 | CG7390-PD | 1..909 | 26..934 | 4545 | 100 | Plus |
smp-30-RB | 912 | CG7390-PB | 1..909 | 26..934 | 4545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-03-10 14:07:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
smp-30-RC | 1102 | CG7390-RC | 118..1035 | 17..934 | 4590 | 100 | Plus |
smp-30-RD | 1297 | CG7390-RD | 321..1230 | 25..934 | 4550 | 100 | Plus |
smp-30-RB | 1219 | CG7390-RB | 53..961 | 26..934 | 4545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-03-10 14:07:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14746407..14747125 | 744..26 | 3595 | 100 | Minus |
3R | 32079331 | 3R | 14746159..14746350 | 934..743 | 960 | 100 | Minus |
X | 23542271 | X | 12015999..12016718 | 22..741 | 480 | 71.1 | Plus |
Blast to na_te.dros performed on 2015-03-10 14:07:03 has no hits.
BO35484.complete Sim4 Records
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-03-10 14:10:38 Download gff for
BO35484.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
smp-30-RC | 118..1035 | 17..936 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-03-10 14:10:38 Download gff for
BO35484.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14746157..14746348 | 745..936 | 98 | <- | Minus |
3R | 14746407..14747128 | 23..744 | 99 | | Minus |
BO35484.pep Sequence
Translation from 16 to 952
> BO35484.pep
MTQMSYKVEAVPDSYAALGEGPHWDVDRQSLYYVDLESAGINRYDFKQNK
VYRAKIEGEIFASFILPVENKPQEFAVGCGLRTVIVQWDGVSAVAKVTRT
LFEVQPDLKENRLNDAKTDPNGRFYGGTMADSGDIFTQWKGELYSWQAGG
QPNAIRSKVGISNGLAWDVKAKKFYFIDTNNHEVLAYDYNQSTGAVSNPK
VIFDLRKIRPEGPLFPDGMTVDTDGNIYVATFNGGTVFKVNPSTGKILLE
IKIPTTQITSVAFGGPNLDILYVTTANKFDQPKPAGTTFQVTGLNAKGYA
GVNLKIASFLDH
BO35484.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2015-03-10 14:06:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
smp-30-PC | 306 | CG7390-PC | 1..306 | 1..306 | 1614 | 100 | Plus |
smp-30-PD | 303 | CG7390-PD | 1..303 | 4..306 | 1599 | 100 | Plus |
smp-30-PB | 303 | CG7390-PB | 1..303 | 4..306 | 1599 | 100 | Plus |
smp-30-PA | 303 | CG7390-PA | 1..303 | 4..306 | 1599 | 100 | Plus |
regucalcin-PB | 303 | CG1803-PB | 1..303 | 4..306 | 1173 | 71.9 | Plus |