Clone Sequence Records
BS01004.3prime Sequence
287 bp (286 high quality bases) assembled on 2005-11-30
> BS01004.3prime
ATGGTCTAGAAAGCTTCGTCACTTTCCGAAGCAGCCACGCCCACAAGTGT
CCATGTGAAGATTTCTGGAAATATTATTGAAAATATGGAGGCTGCTGTTG
CAATGTGCGTTGCAACTGTTGCAACCGTTGCCATTGCTGCAACTGCTGCT
GTTGTGCTGCGCCTGCGCAACATCTGCATATGTGTGTTTGTCTGCTGTTG
ATGGGGGCGTGGCAAGTGCATTGTATAGACCAGATAACCGAATAGATTGA
AAACCAACACCTGAACGTAGCATGTCGACTGATAACT
BS01004.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 15:43:11 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:18:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| drm-RA | 2330 | CG10016-RA | 1302..1561 | 273..14 | 1285 | 99.6 | Minus |
| drm-RB | 2572 | CG10016-RB | 1202..1461 | 273..14 | 1285 | 99.6 | Minus |
| drm-RC | 1799 | CG10016-RC | 977..1030 | 67..14 | 255 | 98.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:18:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3547053..3547312 | 273..14 | 1285 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:18:33 has no hits.
BS01004.3prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:39:58 Download gff for
BS01004.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| drm-RB | 1200..1461 | 14..276 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:30:06 Download gff for
BS01004.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| drm-RB | 1200..1461 | 14..276 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:30:06 Download gff for
BS01004.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3547051..3547312 | 14..276 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:39:58 Download gff for
BS01004.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3547051..3547312 | 14..276 | 99 | | Minus |
BS01004.5prime Sequence
287 bp (286 high quality bases) assembled on 2005-11-30
> BS01004.5prime
GAAGTTATCAGTCGACATGCTACGTTCAGGTGTTGGTTTTCAATCTATTC
GGTTATCTGGTCTATACAATGCACTTGCCACGCCCCCATCAACAGCAGAC
AAACACACATATGCAGATGTTGCGCAGGCGCAGCACAACAGCAGCAGTTG
CAGCAATGGCAACGGTTGCAACAGTTGCAACGCACATTGCAACAGCAGCC
TCCATATTTTCAATAATATTTCCAGAAATCTTCACATGGACACTTGTGGG
CGTGGCTGCTTCGGAAAGTGACGAAGCTTTCTAGACC
BS01004.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 15:43:12 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:00:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| drm-RA | 2330 | CG10016-RA | 1302..1561 | 17..276 | 1285 | 99.6 | Plus |
| drm-RB | 2572 | CG10016-RB | 1202..1461 | 17..276 | 1285 | 99.6 | Plus |
| drm-RC | 1799 | CG10016-RC | 977..1030 | 223..276 | 255 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:00:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3547053..3547312 | 17..276 | 1285 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:00:27 has no hits.
BS01004.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:53:57 Download gff for
BS01004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| drm-RB | 1200..1461 | 14..276 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:41:20 Download gff for
BS01004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| drm-RB | 1200..1461 | 14..276 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:41:20 Download gff for
BS01004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3547051..3547312 | 14..276 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:53:57 Download gff for
BS01004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3547051..3547312 | 14..276 | 99 | | Plus |
