Clone BS01006 Report

Search the DGRC for BS01006

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:10
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptCG6272-RA
Protein status:BS01006.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01006.3prime Sequence

374 bp (373 high quality bases) assembled on 2005-11-30

> BS01006.3prime
ATGGTCTAGAAAGCTTCGTTAGTCATTGTCCTTGGGATCGGGATCTGGTT
CAGCGAGAATCTCCTGGATGATTCGATGGCCGTCCTCCGTTTTCTCACCC
TGAATGATCAGATCTCTAAGCGTAGATATATGTTTTTCACTCGTCTCGAT
CTGAACCTTAAGAGCATCGTTTTGCTTCCTCAAATCATCGATGCGTTTCT
TACGTTCCTCGGCCGATTTCTTGGTCTTTTCGCGTGTGCGCTGAACAGCC
TCATTGTTTTTCTTTCTTTTTTCTTTGTACGCTGGATCGTCTGTGTGCGG
ACTTAATGGCGAATCGCTATTTTTGCTGGTCGACGCGGCAGTTCTCTTTT
TGGCCGGCATGTCGACTGATAACT

BS01006.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:43:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG6272-PA 342 CG6272-RA 1..342 360..19 1710 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:31:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG6272-RB 614 CG6272-RB 77..421 360..16 1725 100 Minus
CG6272-RA 543 CG6272-RA 77..421 360..16 1725 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:31:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11097639..11097874 16..251 1180 100 Plus
3L 28110227 3L 11097999..11098110 249..360 560 100 Plus
Blast to na_te.dros performed on 2015-01-30 16:31:34 has no hits.

BS01006.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:58:00 Download gff for BS01006.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6272-PA 1..342 19..360 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:04:09 Download gff for BS01006.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6272-PA 1..342 19..360 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:26:33 Download gff for BS01006.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6272-RA 77..430 8..360 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:52:27 Download gff for BS01006.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6272-RA 77..430 8..360 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:52:27 Download gff for BS01006.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 11097630..11097872 8..249 98 <- Plus
3L 11098000..11098110 250..360 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:26:33 Download gff for BS01006.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11090730..11090972 8..249 98 <- Plus
arm_3L 11091100..11091210 250..360 100   Plus

BS01006.5prime Sequence

374 bp (373 high quality bases) assembled on 2005-11-30

> BS01006.5prime
GAAGTTATCAGTCGACATGCCGGCCAAAAAGAGAACTGCCGCGTCGACCA
GCAAAAATAGCGATTCGCCATTAAGTCCGCACACAGACGATCCAGCGTAC
AAAGAAAAAAGAAAGAAAAACAATGAGGCTGTTCAGCGCACACGCGAAAA
GACCAAGAAATCGGCCGAGGAACGTAAGAAACGCATCGATGATTTGAGGA
AGCAAAACGATGCTCTTAAGGTTCAGATCGAGACGAGTGAAAAACATATA
TCTACGCTTAGAGATCTGATCATTCAGGGTGAGAAAACGGAGGACGGCCA
TCGAATCATCCAGGAGATTCTCGCTGAACCAGATCCCGATCCCAAGGACA
ATGACTAACGAAGCTTTCTAGACC

BS01006.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:43:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG6272-PA 342 CG6272-RA 1..342 17..358 1710 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:00:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG6272-RB 614 CG6272-RB 77..421 17..361 1725 100 Plus
CG6272-RA 543 CG6272-RA 77..421 17..361 1725 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:59:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11097639..11097874 361..126 1180 100 Minus
3L 28110227 3L 11097999..11098110 128..17 560 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:59:59 has no hits.

BS01006.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:58:01 Download gff for BS01006.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6272-PA 1..342 17..358 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:04:10 Download gff for BS01006.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6272-PA 1..342 17..358 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:53:55 Download gff for BS01006.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6272-RA 77..430 17..369 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:36 Download gff for BS01006.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6272-RA 77..430 17..369 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:36 Download gff for BS01006.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11097630..11097872 128..369 98 <- Minus
3L 11098000..11098110 17..127 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:53:55 Download gff for BS01006.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11090730..11090972 128..369 98 <- Minus
arm_3L 11091100..11091210 17..127 100   Minus

BS01006.complete Sequence

376 bp (376 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634490

> BS01006.complete
GAAGTTATCAGTCGACATGCCGGCCAAAAAGAGAACTGCCGCGTCGACCA
GCAAAAATAGCGATTCGCCATTAAGTCCGCACACAGACGATCCAGCGTAC
AAAGAAAAAAGAAAGAAAAACAATGAGGCTGTTCAGCGCACACGCGAAAA
GACCAAGAAATCGGCCGAGGAACGTAAGAAACGCATCGATGATTTGAGGA
AGCAAAACGATGCTCTTAAGGTTCAGATCGAGACGAGTGAAAAACATATA
TCTACGCTTAGAGATCTGATCATTCAGGGTGAGAAAACGGAGGACGGCCA
TCGAATCATCCAGGAGATTCTCGCTGAACCAGATCCCGATCCCAAGGACA
ATGACTAACGAAGCTTTCTAGACCAT

BS01006.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:07:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG6272-RB 342 CG6272-PB 1..342 17..358 1710 100 Plus
CG6272-RA 342 CG6272-PA 1..342 17..358 1710 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:07:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG6272-RB 614 CG6272-RB 77..421 17..361 1725 100 Plus
CG6272-RA 543 CG6272-RA 77..421 17..361 1725 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:07:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11097639..11097874 361..126 1180 100 Minus
3L 28110227 3L 11097999..11098110 128..17 560 100 Minus
Blast to na_te.dros performed on 2014-11-26 22:07:29 has no hits.

BS01006.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:50:32 Download gff for BS01006.complete
Subject Subject Range Query Range Percent Splice Strand
CG6272-RA 1..342 17..358 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:39:09 Download gff for BS01006.complete
Subject Subject Range Query Range Percent Splice Strand
CG6272-RA 77..430 17..369 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:47:37 Download gff for BS01006.complete
Subject Subject Range Query Range Percent Splice Strand
CG6272-RA 77..420 17..360 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:50:33 Download gff for BS01006.complete
Subject Subject Range Query Range Percent Splice Strand
CG6272-RA 77..430 17..369 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:51:58 Download gff for BS01006.complete
Subject Subject Range Query Range Percent Splice Strand
CG6272-RA 77..420 17..360 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:51:58 Download gff for BS01006.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11097640..11097872 128..360 100 <- Minus
3L 11098000..11098110 17..127 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:47:37 Download gff for BS01006.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11090740..11090972 128..360 100 <- Minus
arm_3L 11091100..11091210 17..127 100   Minus

BS01006.pep Sequence

Translation from 16 to 357

> BS01006.pep
MPAKKRTAASTSKNSDSPLSPHTDDPAYKEKRKKNNEAVQRTREKTKKSA
EERKKRIDDLRKQNDALKVQIETSEKHISTLRDLIIQGEKTEDGHRIIQE
ILAEPDPDPKDND*

BS01006.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:48:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG6272-PB 113 CG6272-PB 1..113 1..113 577 100 Plus
CG6272-PA 113 CG6272-PA 1..113 1..113 577 100 Plus