Clone Sequence Records
BS01006.3prime Sequence
374 bp (373 high quality bases) assembled on 2005-11-30
> BS01006.3prime
ATGGTCTAGAAAGCTTCGTTAGTCATTGTCCTTGGGATCGGGATCTGGTT
CAGCGAGAATCTCCTGGATGATTCGATGGCCGTCCTCCGTTTTCTCACCC
TGAATGATCAGATCTCTAAGCGTAGATATATGTTTTTCACTCGTCTCGAT
CTGAACCTTAAGAGCATCGTTTTGCTTCCTCAAATCATCGATGCGTTTCT
TACGTTCCTCGGCCGATTTCTTGGTCTTTTCGCGTGTGCGCTGAACAGCC
TCATTGTTTTTCTTTCTTTTTTCTTTGTACGCTGGATCGTCTGTGTGCGG
ACTTAATGGCGAATCGCTATTTTTGCTGGTCGACGCGGCAGTTCTCTTTT
TGGCCGGCATGTCGACTGATAACT
BS01006.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:43:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6272-PA | 342 | CG6272-RA | 1..342 | 360..19 | 1710 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:31:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6272-RB | 614 | CG6272-RB | 77..421 | 360..16 | 1725 | 100 | Minus |
CG6272-RA | 543 | CG6272-RA | 77..421 | 360..16 | 1725 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:31:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11097639..11097874 | 16..251 | 1180 | 100 | Plus |
3L | 28110227 | 3L | 11097999..11098110 | 249..360 | 560 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 16:31:34 has no hits.
BS01006.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:58:00 Download gff for
BS01006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6272-PA | 1..342 | 19..360 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:04:09 Download gff for
BS01006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6272-PA | 1..342 | 19..360 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:26:33 Download gff for
BS01006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6272-RA | 77..430 | 8..360 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:52:27 Download gff for
BS01006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6272-RA | 77..430 | 8..360 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:52:27 Download gff for
BS01006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11097630..11097872 | 8..249 | 98 | <- | Plus |
3L | 11098000..11098110 | 250..360 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:26:33 Download gff for
BS01006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11090730..11090972 | 8..249 | 98 | <- | Plus |
arm_3L | 11091100..11091210 | 250..360 | 100 | | Plus |
BS01006.5prime Sequence
374 bp (373 high quality bases) assembled on 2005-11-30
> BS01006.5prime
GAAGTTATCAGTCGACATGCCGGCCAAAAAGAGAACTGCCGCGTCGACCA
GCAAAAATAGCGATTCGCCATTAAGTCCGCACACAGACGATCCAGCGTAC
AAAGAAAAAAGAAAGAAAAACAATGAGGCTGTTCAGCGCACACGCGAAAA
GACCAAGAAATCGGCCGAGGAACGTAAGAAACGCATCGATGATTTGAGGA
AGCAAAACGATGCTCTTAAGGTTCAGATCGAGACGAGTGAAAAACATATA
TCTACGCTTAGAGATCTGATCATTCAGGGTGAGAAAACGGAGGACGGCCA
TCGAATCATCCAGGAGATTCTCGCTGAACCAGATCCCGATCCCAAGGACA
ATGACTAACGAAGCTTTCTAGACC
BS01006.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:43:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6272-PA | 342 | CG6272-RA | 1..342 | 17..358 | 1710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:00:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6272-RB | 614 | CG6272-RB | 77..421 | 17..361 | 1725 | 100 | Plus |
CG6272-RA | 543 | CG6272-RA | 77..421 | 17..361 | 1725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:59:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11097639..11097874 | 361..126 | 1180 | 100 | Minus |
3L | 28110227 | 3L | 11097999..11098110 | 128..17 | 560 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:59:59 has no hits.
BS01006.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:58:01 Download gff for
BS01006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6272-PA | 1..342 | 17..358 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:04:10 Download gff for
BS01006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6272-PA | 1..342 | 17..358 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:53:55 Download gff for
BS01006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6272-RA | 77..430 | 17..369 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:36 Download gff for
BS01006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6272-RA | 77..430 | 17..369 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:36 Download gff for
BS01006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11097630..11097872 | 128..369 | 98 | <- | Minus |
3L | 11098000..11098110 | 17..127 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:53:55 Download gff for
BS01006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11090730..11090972 | 128..369 | 98 | <- | Minus |
arm_3L | 11091100..11091210 | 17..127 | 100 | | Minus |
BS01006.complete Sequence
376 bp (376 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634490
> BS01006.complete
GAAGTTATCAGTCGACATGCCGGCCAAAAAGAGAACTGCCGCGTCGACCA
GCAAAAATAGCGATTCGCCATTAAGTCCGCACACAGACGATCCAGCGTAC
AAAGAAAAAAGAAAGAAAAACAATGAGGCTGTTCAGCGCACACGCGAAAA
GACCAAGAAATCGGCCGAGGAACGTAAGAAACGCATCGATGATTTGAGGA
AGCAAAACGATGCTCTTAAGGTTCAGATCGAGACGAGTGAAAAACATATA
TCTACGCTTAGAGATCTGATCATTCAGGGTGAGAAAACGGAGGACGGCCA
TCGAATCATCCAGGAGATTCTCGCTGAACCAGATCCCGATCCCAAGGACA
ATGACTAACGAAGCTTTCTAGACCAT
BS01006.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:07:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6272-RB | 342 | CG6272-PB | 1..342 | 17..358 | 1710 | 100 | Plus |
CG6272-RA | 342 | CG6272-PA | 1..342 | 17..358 | 1710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:07:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6272-RB | 614 | CG6272-RB | 77..421 | 17..361 | 1725 | 100 | Plus |
CG6272-RA | 543 | CG6272-RA | 77..421 | 17..361 | 1725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:07:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11097639..11097874 | 361..126 | 1180 | 100 | Minus |
3L | 28110227 | 3L | 11097999..11098110 | 128..17 | 560 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:07:29 has no hits.
BS01006.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:50:32 Download gff for
BS01006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6272-RA | 1..342 | 17..358 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:39:09 Download gff for
BS01006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6272-RA | 77..430 | 17..369 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:47:37 Download gff for
BS01006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6272-RA | 77..420 | 17..360 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:50:33 Download gff for
BS01006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6272-RA | 77..430 | 17..369 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:51:58 Download gff for
BS01006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6272-RA | 77..420 | 17..360 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:51:58 Download gff for
BS01006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11097640..11097872 | 128..360 | 100 | <- | Minus |
3L | 11098000..11098110 | 17..127 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:47:37 Download gff for
BS01006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11090740..11090972 | 128..360 | 100 | <- | Minus |
arm_3L | 11091100..11091210 | 17..127 | 100 | | Minus |
BS01006.pep Sequence
Translation from 16 to 357
> BS01006.pep
MPAKKRTAASTSKNSDSPLSPHTDDPAYKEKRKKNNEAVQRTREKTKKSA
EERKKRIDDLRKQNDALKVQIETSEKHISTLRDLIIQGEKTEDGHRIIQE
ILAEPDPDPKDND*
BS01006.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:48:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6272-PB | 113 | CG6272-PB | 1..113 | 1..113 | 577 | 100 | Plus |
CG6272-PA | 113 | CG6272-PA | 1..113 | 1..113 | 577 | 100 | Plus |