Clone Sequence Records
BS01008.3prime Sequence
431 bp (430 high quality bases) assembled on 2005-11-30
> BS01008.3prime
ATGGTCTAGAAAGCTTCGTTAGCCGAGTCTTCGTATCTCGTCCATGGTGA
ATCCGTTGCGGTTGAGCATTATGCAGAAGAGCACGTACACATAGTAGCTT
CCCGGGATGAAGGTCAGTGCCCCGATGATACCCAACGCCCACACCCGATC
CGATCGCTCCCGGCTCGTGTCCGTCACCCAGTTTAAGGTGGCAAAGGCGA
TGCAAACAATGCCACCGATAAACAGCAAAAGAATGATAATAATGGTCTTC
CAAGGCACTGGACCTGGCATCGCCGGTTCCGTCCACTGTTCATTAACGAA
TCCATCGGTCTCGCATTGGGACTCCACCACCTTGATGTACTCTCCGGAGC
CTGCTGGCGCGGAACTCCTGCCCCCTCCATTTAGGCGGTGCCGCGACTCC
GAATTGGTGGGCTCCATGTCGACTGATAACT
BS01008.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:43:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2611-PA | 399 | CG2611-RA | 1..397 | 417..21 | 1985 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:40:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2611-RA | 634 | CG2611-RA | 63..459 | 417..21 | 1985 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:40:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20650251..20650462 | 417..206 | 1060 | 100 | Minus |
2L | 23513712 | 2L | 20650537..20650723 | 207..21 | 935 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:40:35 has no hits.
BS01008.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:58:04 Download gff for
BS01008.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2611-PA | 1..399 | 19..417 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:04:14 Download gff for
BS01008.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2611-PA | 1..399 | 19..417 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 14:04:38 Download gff for
BS01008.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2611-RA | 58..465 | 14..425 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:07:04 Download gff for
BS01008.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2611-RA | 58..465 | 14..425 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:07:04 Download gff for
BS01008.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20650246..20650460 | 208..425 | 98 | -> | Minus |
2L | 20650537..20650729 | 14..207 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 14:04:38 Download gff for
BS01008.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20650537..20650729 | 14..207 | 98 | -> | Minus |
arm_2L | 20650246..20650460 | 208..425 | 98 | -> | Minus |
BS01008.5prime Sequence
431 bp (430 high quality bases) assembled on 2005-11-30
> BS01008.5prime
GAAGTTATCAGTCGACATGGAGCCCACCAATTCGGAGTCGCGGCACCGCC
TAAATGGAGGGGGCAGGAGTTCCGCGCCAGCAGGCTCCGGAGAGTACATC
AAGGTGGTGGAGTCCCAATGCGAGACCGATGGATTCGTTAATGAACAGTG
GACGGAACCGGCGATGCCAGGTCCAGTGCCTTGGAAGACCATTATTATCA
TTCTTTTGCTGTTTATCGGTGGCATTGTTTGCATCGCCTTTGCCACCTTA
AACTGGGTGACGGACACGAGCCGGGAGCGATCGGATCGGGTGTGGGCGTT
GGGTATCATCGGGGCACTGACCTTCATCCCGGGAAGCTACTATGTGTACG
TGCTCTTCTGCATAATGCTCAACCGCAACGGATTCACCATGGACGAGATA
CGAAGACTCGGCTAACGAAGCTTTCTAGACC
BS01008.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:43:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2611-PA | 399 | CG2611-RA | 1..397 | 17..413 | 1985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:13:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2611-RA | 634 | CG2611-RA | 63..459 | 17..413 | 1985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:13:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20650251..20650462 | 17..228 | 1060 | 100 | Plus |
2L | 23513712 | 2L | 20650537..20650723 | 227..413 | 935 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 04:13:38 has no hits.
BS01008.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:58:05 Download gff for
BS01008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2611-PA | 1..399 | 17..415 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:04:16 Download gff for
BS01008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2611-PA | 1..399 | 17..415 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 05:08:51 Download gff for
BS01008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2611-RA | 58..465 | 9..420 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:50:16 Download gff for
BS01008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2611-RA | 58..465 | 9..420 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:50:16 Download gff for
BS01008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20650246..20650460 | 9..226 | 98 | -> | Plus |
2L | 20650537..20650729 | 227..420 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 05:08:51 Download gff for
BS01008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20650246..20650460 | 9..226 | 98 | -> | Plus |
arm_2L | 20650537..20650729 | 227..420 | 98 | -> | Plus |
BS01008.complete Sequence
433 bp (433 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634491
> BS01008.complete
GAAGTTATCAGTCGACATGGAGCCCACCAATTCGGAGTCGCGGCACCGCC
TAAATGGAGGGGGCAGGAGTTCCGCGCCAGCAGGCTCCGGAGAGTACATC
AAGGTGGTGGAGTCCCAATGCGAGACCGATGGATTCGTTAATGAACAGTG
GACGGAACCGGCGATGCCAGGTCCAGTGCCTTGGAAGACCATTATTATCA
TTCTTTTGCTGTTTATCGGTGGCATTGTTTGCATCGCCTTTGCCACCTTA
AACTGGGTGACGGACACGAGCCGGGAGCGATCGGATCGGGTGTGGGCGTT
GGGTATCATCGGGGCACTGACCTTCATCCCGGGAAGCTACTATGTGTACG
TGCTCTTCTGCATAATGCTCAACCGCAACGGATTCACCATGGACGAGATA
CGAAGACTCGGCTAACGAAGCTTTCTAGACCAT
BS01008.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:52:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2611-RA | 399 | CG2611-PA | 1..397 | 17..413 | 1985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:52:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2611-RA | 634 | CG2611-RA | 63..459 | 17..413 | 1985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:52:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20650251..20650462 | 17..228 | 1060 | 100 | Plus |
2L | 23513712 | 2L | 20650537..20650723 | 227..413 | 935 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:52:22 has no hits.
BS01008.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:49 Download gff for
BS01008.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2611-RA | 1..399 | 17..415 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:22:11 Download gff for
BS01008.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2611-RA | 53..460 | 9..420 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:28 Download gff for
BS01008.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2611-RA | 63..460 | 17..417 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:49 Download gff for
BS01008.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2611-RA | 53..460 | 9..420 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:29:07 Download gff for
BS01008.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2611-RA | 63..460 | 17..417 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:29:07 Download gff for
BS01008.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20650537..20650724 | 227..417 | 98 | | Plus |
2L | 20650251..20650460 | 17..226 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:28 Download gff for
BS01008.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20650251..20650460 | 17..226 | 100 | -> | Plus |
arm_2L | 20650537..20650724 | 227..417 | 98 | | Plus |
BS01008.pep Sequence
Translation from 16 to 414
> BS01008.pep
MEPTNSESRHRLNGGGRSSAPAGSGEYIKVVESQCETDGFVNEQWTEPAM
PGPVPWKTIIIILLLFIGGIVCIAFATLNWVTDTSRERSDRVWALGIIGA
LTFIPGSYYVYVLFCIMLNRNGFTMDEIRRLG*
BS01008.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:09:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2611-PA | 132 | CG2611-PA | 1..132 | 1..132 | 703 | 100 | Plus |