Clone BS01008 Report

Search the DGRC for BS01008

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:10
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptCG2611-RA
Protein status:BS01008.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01008.3prime Sequence

431 bp (430 high quality bases) assembled on 2005-11-30

> BS01008.3prime
ATGGTCTAGAAAGCTTCGTTAGCCGAGTCTTCGTATCTCGTCCATGGTGA
ATCCGTTGCGGTTGAGCATTATGCAGAAGAGCACGTACACATAGTAGCTT
CCCGGGATGAAGGTCAGTGCCCCGATGATACCCAACGCCCACACCCGATC
CGATCGCTCCCGGCTCGTGTCCGTCACCCAGTTTAAGGTGGCAAAGGCGA
TGCAAACAATGCCACCGATAAACAGCAAAAGAATGATAATAATGGTCTTC
CAAGGCACTGGACCTGGCATCGCCGGTTCCGTCCACTGTTCATTAACGAA
TCCATCGGTCTCGCATTGGGACTCCACCACCTTGATGTACTCTCCGGAGC
CTGCTGGCGCGGAACTCCTGCCCCCTCCATTTAGGCGGTGCCGCGACTCC
GAATTGGTGGGCTCCATGTCGACTGATAACT

BS01008.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:43:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG2611-PA 399 CG2611-RA 1..397 417..21 1985 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:40:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG2611-RA 634 CG2611-RA 63..459 417..21 1985 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:40:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20650251..20650462 417..206 1060 100 Minus
2L 23513712 2L 20650537..20650723 207..21 935 100 Minus
Blast to na_te.dros performed on 2015-02-12 00:40:35 has no hits.

BS01008.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:58:04 Download gff for BS01008.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2611-PA 1..399 19..417 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:04:14 Download gff for BS01008.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2611-PA 1..399 19..417 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 14:04:38 Download gff for BS01008.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2611-RA 58..465 14..425 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:07:04 Download gff for BS01008.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2611-RA 58..465 14..425 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:07:04 Download gff for BS01008.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 20650246..20650460 208..425 98 -> Minus
2L 20650537..20650729 14..207 98 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 14:04:38 Download gff for BS01008.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20650537..20650729 14..207 98 -> Minus
arm_2L 20650246..20650460 208..425 98 -> Minus

BS01008.5prime Sequence

431 bp (430 high quality bases) assembled on 2005-11-30

> BS01008.5prime
GAAGTTATCAGTCGACATGGAGCCCACCAATTCGGAGTCGCGGCACCGCC
TAAATGGAGGGGGCAGGAGTTCCGCGCCAGCAGGCTCCGGAGAGTACATC
AAGGTGGTGGAGTCCCAATGCGAGACCGATGGATTCGTTAATGAACAGTG
GACGGAACCGGCGATGCCAGGTCCAGTGCCTTGGAAGACCATTATTATCA
TTCTTTTGCTGTTTATCGGTGGCATTGTTTGCATCGCCTTTGCCACCTTA
AACTGGGTGACGGACACGAGCCGGGAGCGATCGGATCGGGTGTGGGCGTT
GGGTATCATCGGGGCACTGACCTTCATCCCGGGAAGCTACTATGTGTACG
TGCTCTTCTGCATAATGCTCAACCGCAACGGATTCACCATGGACGAGATA
CGAAGACTCGGCTAACGAAGCTTTCTAGACC

BS01008.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:43:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG2611-PA 399 CG2611-RA 1..397 17..413 1985 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:13:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG2611-RA 634 CG2611-RA 63..459 17..413 1985 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:13:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20650251..20650462 17..228 1060 100 Plus
2L 23513712 2L 20650537..20650723 227..413 935 100 Plus
Blast to na_te.dros performed on 2015-02-04 04:13:38 has no hits.

BS01008.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:58:05 Download gff for BS01008.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2611-PA 1..399 17..415 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:04:16 Download gff for BS01008.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2611-PA 1..399 17..415 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 05:08:51 Download gff for BS01008.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2611-RA 58..465 9..420 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:50:16 Download gff for BS01008.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2611-RA 58..465 9..420 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:50:16 Download gff for BS01008.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 20650246..20650460 9..226 98 -> Plus
2L 20650537..20650729 227..420 98 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 05:08:51 Download gff for BS01008.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20650246..20650460 9..226 98 -> Plus
arm_2L 20650537..20650729 227..420 98 -> Plus

BS01008.complete Sequence

433 bp (433 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634491

> BS01008.complete
GAAGTTATCAGTCGACATGGAGCCCACCAATTCGGAGTCGCGGCACCGCC
TAAATGGAGGGGGCAGGAGTTCCGCGCCAGCAGGCTCCGGAGAGTACATC
AAGGTGGTGGAGTCCCAATGCGAGACCGATGGATTCGTTAATGAACAGTG
GACGGAACCGGCGATGCCAGGTCCAGTGCCTTGGAAGACCATTATTATCA
TTCTTTTGCTGTTTATCGGTGGCATTGTTTGCATCGCCTTTGCCACCTTA
AACTGGGTGACGGACACGAGCCGGGAGCGATCGGATCGGGTGTGGGCGTT
GGGTATCATCGGGGCACTGACCTTCATCCCGGGAAGCTACTATGTGTACG
TGCTCTTCTGCATAATGCTCAACCGCAACGGATTCACCATGGACGAGATA
CGAAGACTCGGCTAACGAAGCTTTCTAGACCAT

BS01008.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:52:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG2611-RA 399 CG2611-PA 1..397 17..413 1985 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:52:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG2611-RA 634 CG2611-RA 63..459 17..413 1985 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:52:21
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20650251..20650462 17..228 1060 100 Plus
2L 23513712 2L 20650537..20650723 227..413 935 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:52:22 has no hits.

BS01008.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:49 Download gff for BS01008.complete
Subject Subject Range Query Range Percent Splice Strand
CG2611-RA 1..399 17..415 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:22:11 Download gff for BS01008.complete
Subject Subject Range Query Range Percent Splice Strand
CG2611-RA 53..460 9..420 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:28 Download gff for BS01008.complete
Subject Subject Range Query Range Percent Splice Strand
CG2611-RA 63..460 17..417 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:49 Download gff for BS01008.complete
Subject Subject Range Query Range Percent Splice Strand
CG2611-RA 53..460 9..420 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:29:07 Download gff for BS01008.complete
Subject Subject Range Query Range Percent Splice Strand
CG2611-RA 63..460 17..417 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:29:07 Download gff for BS01008.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20650537..20650724 227..417 98   Plus
2L 20650251..20650460 17..226 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:28 Download gff for BS01008.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20650251..20650460 17..226 100 -> Plus
arm_2L 20650537..20650724 227..417 98   Plus

BS01008.pep Sequence

Translation from 16 to 414

> BS01008.pep
MEPTNSESRHRLNGGGRSSAPAGSGEYIKVVESQCETDGFVNEQWTEPAM
PGPVPWKTIIIILLLFIGGIVCIAFATLNWVTDTSRERSDRVWALGIIGA
LTFIPGSYYVYVLFCIMLNRNGFTMDEIRRLG*

BS01008.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:09:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG2611-PA 132 CG2611-PA 1..132 1..132 703 100 Plus