Clone Sequence Records
BS01009.3prime Sequence
431 bp (430 high quality bases) assembled on 2005-11-30
> BS01009.3prime
ATGGTCTAGAAAGCTTCGTCAGCAGCCCTCCAGCTCGCTGGGAATGGGTA
TCTCGTTCTGGATGGCGAACTGCAGCAGCGCCTTGTACTTGTTCTTCCAG
TTGGACACCTCGCGGCGCACCTGCTCGTTGTCCTCGTGCATCTGCTCCAG
TTCCGTCCACTCGTACGACTTCTTAGTCTCCAGCTCGTCCTTCTGTTCGA
TTCTCTTGATGCGGCAACTGGCTGCGTATCCGCGATTCTTTAAGGTTCTC
CGGCGCTGCTTCATCCGAACGATCTCCTCGCGGTTCAGGCCACGCATCTT
GAGGGTCCGATTAAGATCCCTTACCGAAATGCTCACCAAATCGTCATCGG
TAATATCCGGAATTGGACATGGCGAAAGTGGTGCCAGGGATGACTTTCTC
TCGCGCTTTGCTTCCATGTCGACTGATAACT
BS01009.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:43:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9954-PA | 399 | maf-S-RA | 1..399 | 417..19 | 1995 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:09:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| maf-S-RA | 631 | CG9954-RA | 111..509 | 417..19 | 1995 | 100 | Minus |
| maf-S-RB | 646 | CG9954-RB | 158..524 | 385..19 | 1835 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:09:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20641180..20641546 | 385..19 | 1835 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 07:09:39 has no hits.
BS01009.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:58:06 Download gff for
BS01009.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| maf-S-PA | 1..399 | 19..417 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:04:18 Download gff for
BS01009.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9954-PA | 1..399 | 19..417 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 17:01:38 Download gff for
BS01009.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| maf-S-RA | 101..513 | 16..427 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:02:16 Download gff for
BS01009.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| maf-S-RA | 101..513 | 16..427 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:02:16 Download gff for
BS01009.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20641181..20641550 | 16..384 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 17:01:38 Download gff for
BS01009.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16528686..16529055 | 16..384 | 99 | | Minus |
BS01009.5prime Sequence
431 bp (430 high quality bases) assembled on 2005-11-30
> BS01009.5prime
GAAGTTATCAGTCGACATGGAAGCAAAGCGCGAGAGAAAGTCATCCCTGG
CACCACTTTCGCCATGTCCAATTCCGGATATTACCGATGACGATTTGGTG
AGCATTTCGGTAAGGGATCTTAATCGGACCCTCAAGATGCGTGGCCTGAA
CCGCGAGGAGATCGTTCGGATGAAGCAGCGCCGGAGAACCTTAAAGAATC
GCGGATACGCAGCCAGTTGCCGCATCAAGAGAATCGAACAGAAGGACGAG
CTGGAGACTAAGAAGTCGTACGAGTGGACGGAACTGGAGCAGATGCACGA
GGACAACGAGCAGGTGCGCCGCGAGGTGTCCAACTGGAAGAACAAGTACA
AGGCGCTGCTGCAGTTCGCCATCCAGAACGAGATACCCATTCCCAGCGAG
CTGGAGGGCTGCTGACGAAGCTTTCTAGACC
BS01009.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:43:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9954-PA | 399 | maf-S-RA | 1..399 | 17..415 | 1995 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:19:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| maf-S-RA | 631 | CG9954-RA | 111..509 | 17..415 | 1995 | 100 | Plus |
| maf-S-RB | 646 | CG9954-RB | 158..524 | 49..415 | 1835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:19:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20641180..20641546 | 49..415 | 1835 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:19:18 has no hits.
BS01009.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:58:06 Download gff for
BS01009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| maf-S-PA | 1..399 | 17..415 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:04:19 Download gff for
BS01009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9954-PA | 1..399 | 17..415 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:35:32 Download gff for
BS01009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| maf-S-RA | 101..513 | 7..418 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:58:17 Download gff for
BS01009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| maf-S-RA | 101..513 | 7..418 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:58:17 Download gff for
BS01009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20641181..20641550 | 50..418 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:35:32 Download gff for
BS01009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16528686..16529055 | 50..418 | 99 | | Plus |
BS01009.complete Sequence
433 bp (433 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634492
> BS01009.complete
GAAGTTATCAGTCGACATGGAAGCAAAGCGCGAGAGAAAGTCATCCCTGG
CACCACTTTCGCCATGTCCAATTCCGGATATTACCGATGACGATTTGGTG
AGCATTTCGGTAAGGGATCTTAATCGGACCCTCAAGATGCGTGGCCTGAA
CCGCGAGGAGATCGTTCGGATGAAGCAGCGCCGGAGAACCTTAAAGAATC
GCGGATACGCAGCCAGTTGCCGCATCAAGAGAATCGAACAGAAGGACGAG
CTGGAGACTAAGAAGTCGTACGAGTGGACGGAACTGGAGCAGATGCACGA
GGACAACGAGCAGGTGCGCCGCGAGGTGTCCAACTGGAAGAACAAGTACA
AGGCGCTGCTGCAGTTCGCCATCCAGAACGAGATACCCATTCCCAGCGAG
CTGGAGGGCTGCTGACGAAGCTTTCTAGACCAT
BS01009.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:38:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| maf-S-RA | 399 | CG9954-PA | 1..399 | 17..415 | 1995 | 100 | Plus |
| maf-S-RB | 414 | CG9954-PB | 48..414 | 49..415 | 1835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:38:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| maf-S-RA | 631 | CG9954-RA | 111..509 | 17..415 | 1995 | 100 | Plus |
| maf-S-RB | 646 | CG9954-RB | 158..524 | 49..415 | 1835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:38:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20641180..20641546 | 49..415 | 1835 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:38:00 has no hits.
BS01009.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:50 Download gff for
BS01009.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| maf-S-RA | 1..399 | 17..415 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:22:13 Download gff for
BS01009.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| maf-S-RA | 106..518 | 7..418 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:19:41 Download gff for
BS01009.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| maf-S-RA | 111..512 | 17..417 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:50 Download gff for
BS01009.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| maf-S-RA | 106..518 | 7..418 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:26:55 Download gff for
BS01009.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| maf-S-RA | 111..512 | 17..417 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:26:55 Download gff for
BS01009.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20641086..20641118 | 17..49 | 100 | -> | Plus |
| 2R | 20641181..20641549 | 50..417 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:19:41 Download gff for
BS01009.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16528591..16528623 | 17..49 | 100 | -> | Plus |
| arm_2R | 16528686..16529054 | 50..417 | 99 | | Plus |
BS01009.pep Sequence
Translation from 16 to 414
> BS01009.pep
MEAKRERKSSLAPLSPCPIPDITDDDLVSISVRDLNRTLKMRGLNREEIV
RMKQRRRTLKNRGYAASCRIKRIEQKDELETKKSYEWTELEQMHEDNEQV
RREVSNWKNKYKALLQFAIQNEIPIPSELEGC*
BS01009.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:45:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| maf-S-PA | 132 | CG9954-PA | 1..132 | 1..132 | 682 | 100 | Plus |
| maf-S-PB | 137 | CG9954-PB | 1..137 | 1..132 | 666 | 96.4 | Plus |
| tj-PB | 511 | CG10034-PB | 389..482 | 10..116 | 177 | 40.2 | Plus |
| tj-PC | 555 | CG10034-PC | 389..482 | 10..116 | 177 | 40.2 | Plus |
