Clone BS01012 Report

Search the DGRC for BS01012

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:10
Well:12
Vector:pDNR-Dual
Associated Gene/Transcriptgrh-RM
Protein status:BS01012.pep: full length peptide match
Sequenced Size:501

Clone Sequence Records

BS01012.5prime Sequence

499 bp (498 high quality bases) assembled on 2005-11-30

> BS01012.5prime
GAAGTTATCAGTCGACATGACAGCCACGGGCAGAAAGAAGCTGGACGAGC
TTTACCATCCGGTAACGGATCGGTCCGAGTTCTATGGCATGCAGGACTTC
GCCAAGCCGCCGGTGCTATTCTCGCCCGCCGAGGACATGGAGAAGAGCTT
CTACGGCCATGAGACTGACTCGCCGGACCTGAAGGGGGCCTCACCGTTCC
TGCTCCACGGCCAGAAGGTGGCCACGCCGACGCTCAAGTTCCACAACCAT
TTTCCGCCCGACATGCAGACCGATAAGAAGGATCACATACTGGACCAGAA
CATGTTGACCAGCACACCCCTGACCGACTTTGGTCCGCCGATGAAGCGCG
GCAGGATGACGCCGCCGACCTCGGAACGCGTGATGCTGTACGTGCGGCAG
GAGAACGAGGAGGTGTATACACCGTTGCACGTGGTGCCGCCCACCACGAT
CGGCCTGCTAAATGCGGATTACTGCGAAAATTGACGAGCTTTCTAGACC

BS01012.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:43:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG5058-PF 468 grh-RF 1..468 17..484 2340 100 Plus
CG5058-PC 3909 grh-RC 3268..3717 17..466 2250 100 Plus
CG5058-PB 3099 grh-RB 2458..2907 17..466 2250 100 Plus
CG5058-PG 2190 grh-RG 1676..1998 144..466 1615 100 Plus
CG5058-PA 3192 grh-RA 2678..3000 144..466 1615 100 Plus
CG5058-PD 4002 grh-RD 3488..3810 144..466 1615 100 Plus
CG5058-PG 2190 grh-RG 1456..1584 17..145 645 100 Plus
CG5058-PA 3192 grh-RA 2458..2586 17..145 645 100 Plus
CG5058-PD 4002 grh-RD 3268..3396 17..145 645 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:24:31
Subject Length Description Subject Range Query Range Score Percent Strand
grh-RO 3094 CG42311-RO 1799..2248 17..466 2250 100 Plus
grh-RL 6692 CG42311-RL 4105..4554 17..466 2250 100 Plus
grh-RH 3972 CG42311-RH 3295..3744 17..466 2250 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:24:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17839594..17839790 271..467 985 100 Plus
2R 25286936 2R 17839093..17839221 17..145 645 100 Plus
2R 25286936 2R 17839313..17839439 144..270 635 100 Plus
Blast to na_te.dros performed on 2015-02-11 15:24:30 has no hits.

BS01012.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:58:11 Download gff for BS01012.5prime
Subject Subject Range Query Range Percent Splice Strand
grh-PF 1..468 17..484 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:04:25 Download gff for BS01012.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5058-PF 1..468 17..484 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:24:25 Download gff for BS01012.5prime
Subject Subject Range Query Range Percent Splice Strand
grh-RH 3295..3741 17..463 100 -> Plus
grh-RH 3808..3830 464..487 95   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:23:02 Download gff for BS01012.5prime
Subject Subject Range Query Range Percent Splice Strand
grh-RH 3295..3741 17..463 100 -> Plus
grh-RH 3808..3830 464..487 95   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:23:02 Download gff for BS01012.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17840748..17840768 467..487 100   Plus
2R 17839093..17839221 17..145 100 -> Plus
2R 17839315..17839439 146..270 100 -> Plus
2R 17839594..17839789 271..466 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:24:25 Download gff for BS01012.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13726598..13726726 17..145 100 -> Plus
arm_2R 13726820..13726944 146..270 100 -> Plus
arm_2R 13727099..13727294 271..466 100 -> Plus
arm_2R 13728253..13728273 467..487 100   Plus

BS01012.3prime Sequence

499 bp (498 high quality bases) assembled on 2005-11-30

> BS01012.3prime
ATGGTCTAGAAAGCTCGTCAATTTTCGCAGTAATCCGCATTTAGCAGGCC
GATCGTGGTGGGCGGCACCACGTGCAACGGTGTATACACCTCCTCGTTCT
CCTGCCGCACGTACAGCATCACGCGTTCCGAGGTCGGCGGCGTCATCCTG
CCGCGCTTCATCGGCGGACCAAAGTCGGTCAGGGGTGTGCTGGTCAACAT
GTTCTGGTCCAGTATGTGATCCTTCTTATCGGTCTGCATGTCGGGCGGAA
AATGGTTGTGGAACTTGAGCGTCGGCGTGGCCACCTTCTGGCCGTGGAGC
AGGAACGGTGAGGCCCCCTTCAGGTCCGGCGAGTCAGTCTCATGGCCGTA
GAAGCTCTTCTCCATGTCCTCGGCGGGCGAGAATAGCACCGGCGGCTTGG
CGAAGTCCTGCATGCCATAGAACTCGGACCGATCCGTTACCGGATGGTAA
AGCTCGTCCAGCTTCTTTCTGCCCGTGGCTGTCATGTCGACTGATAACT

BS01012.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:43:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG5058-PF 468 grh-RF 1..468 485..18 2340 100 Minus
CG5058-PC 3909 grh-RC 3268..3717 485..36 2250 100 Minus
CG5058-PB 3099 grh-RB 2458..2907 485..36 2250 100 Minus
CG5058-PG 2190 grh-RG 1676..1998 358..36 1615 100 Minus
CG5058-PA 3192 grh-RA 2678..3000 358..36 1615 100 Minus
CG5058-PD 4002 grh-RD 3488..3810 358..36 1615 100 Minus
CG5058-PG 2190 grh-RG 1456..1584 485..357 645 100 Minus
CG5058-PA 3192 grh-RA 2458..2586 485..357 645 100 Minus
CG5058-PD 4002 grh-RD 3268..3396 485..357 645 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:55:44
Subject Length Description Subject Range Query Range Score Percent Strand
grh-RO 3094 CG42311-RO 1799..2248 485..36 2250 100 Minus
grh-RL 6692 CG42311-RL 4105..4554 485..36 2250 100 Minus
grh-RH 3972 CG42311-RH 3295..3744 485..36 2250 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:55:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17839594..17839790 231..35 985 100 Minus
2R 25286936 2R 17839093..17839221 485..357 645 100 Minus
2R 25286936 2R 17839313..17839439 358..232 635 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:55:40 has no hits.

BS01012.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:58:10 Download gff for BS01012.3prime
Subject Subject Range Query Range Percent Splice Strand
grh-PF 1..468 18..485 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:04:23 Download gff for BS01012.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5058-PF 1..468 18..485 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:07:56 Download gff for BS01012.3prime
Subject Subject Range Query Range Percent Splice Strand
grh-RH 3295..3741 39..485 100 -> Minus
grh-RH 3808..3830 15..38 95   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:04:50 Download gff for BS01012.3prime
Subject Subject Range Query Range Percent Splice Strand
grh-RH 3295..3741 39..485 100 -> Minus
grh-RH 3808..3830 15..38 95   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:04:50 Download gff for BS01012.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 17839093..17839221 357..485 100 -> Minus
2R 17839315..17839439 232..356 100 -> Minus
2R 17839594..17839789 36..231 100 -> Minus
2R 17840748..17840768 15..35 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:07:56 Download gff for BS01012.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13726598..13726726 357..485 100 -> Minus
arm_2R 13726820..13726944 232..356 100 -> Minus
arm_2R 13727099..13727294 36..231 100 -> Minus
arm_2R 13728253..13728273 15..35 100   Minus

BS01012.complete Sequence

501 bp assembled on 2008-08-15

GenBank Submission: FJ634493

> BS01012.complete
GAAGTTATCAGTCGACATGACAGCCACGGGCAGAAAGAAGCTGGACGAGC
TTTACCATCCGGTAACGGATCGGTCCGAGTTCTATGGCATGCAGGACTTC
GCCAAGCCGCCGGTGCTATTCTCGCCCGCCGAGGACATGGAGAAGAGCTT
CTACGGCCATGAGACTGACTCGCCGGACCTGAAGGGGGCCTCACCGTTCC
TGCTCCACGGCCAGAAGGTGGCCACGCCGACGCTCAAGTTCCACAACCAT
TTTCCGCCCGACATGCAGACCGATAAGAAGGATCACATACTGGACCAGAA
CATGTTGACCAGCACACCCCTGACCGACTTTGGTCCGCCGATGAAGCGCG
GCAGGATGACGCCGCCGACCTCGGAACGCGTGATGCTGTACGTGCGGCAG
GAGAACGAGGAGGTGTATACACCGTTGCACGTGGTGCCGCCCACCACGAT
CGGCCTGCTAAATGCGGATTACTGCGAAAATTGACGAGCTTTCTAGACCA
T

BS01012.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:56:53
Subject Length Description Subject Range Query Range Score Percent Strand
grh-RO 2097 CG42311-PO 1456..1905 17..466 2250 100 Plus
grh-RL 3909 CG42311-PL 3268..3717 17..466 2250 100 Plus
grh-RH 3099 CG42311-PH 2458..2907 17..466 2250 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:56:54
Subject Length Description Subject Range Query Range Score Percent Strand
grh-RO 3094 CG42311-RO 1799..2248 17..466 2250 100 Plus
grh-RL 6692 CG42311-RL 4105..4554 17..466 2250 100 Plus
grh-RH 3972 CG42311-RH 3295..3744 17..466 2250 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:56:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17839594..17839790 271..467 985 100 Plus
2R 25286936 2R 17839093..17839221 17..145 645 100 Plus
2R 25286936 2R 17839313..17839439 144..270 635 100 Plus
Blast to na_te.dros performed on 2014-11-26 21:56:53 has no hits.

BS01012.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:54:40 Download gff for BS01012.complete
Subject Subject Range Query Range Percent Splice Strand
grh-RE 447..917 17..487 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:41:45 Download gff for BS01012.complete
Subject Subject Range Query Range Percent Splice Strand
grh-RH 3295..3741 17..463 100 -> Plus
grh-RH 3808..3828 464..485 95   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:12:07 Download gff for BS01012.complete
Subject Subject Range Query Range Percent Splice Strand
grh-RE 447..915 17..485 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:46:39 Download gff for BS01012.complete
Subject Subject Range Query Range Percent Splice Strand
grh-RH 3295..3741 17..463 100 -> Plus
grh-RH 3808..3828 464..485 95   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:46:39 Download gff for BS01012.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17839594..17839789 271..466 100 -> Plus
2R 17840748..17840766 467..485 100   Plus
2R 17839093..17839221 17..145 100 -> Plus
2R 17839315..17839439 146..270 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:41:45 Download gff for BS01012.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13726598..13726726 17..145 100 -> Plus
arm_2R 13726820..13726944 146..270 100 -> Plus
arm_2R 13727099..13727294 271..466 100 -> Plus
arm_2R 13728253..13728271 467..485 100   Plus

BS01012.pep Sequence

Translation from 16 to 483

> BS01012.pep
MTATGRKKLDELYHPVTDRSEFYGMQDFAKPPVLFSPAEDMEKSFYGHET
DSPDLKGASPFLLHGQKVATPTLKFHNHFPPDMQTDKKDHILDQNMLTST
PLTDFGPPMKRGRMTPPTSERVMLYVRQENEEVYTPLHVVPPTTIGLLNA
DYCEN*

BS01012.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:41:42
Subject Length Description Subject Range Query Range Score Percent Strand
grh-PO 698 CG42311-PO 486..635 1..150 809 100 Plus
grh-PH 1032 CG42311-PH 820..969 1..150 809 100 Plus
grh-PL 1302 CG42311-PL 1090..1239 1..150 809 100 Plus
grh-PN 729 CG42311-PN 486..666 1..150 767 82.9 Plus
grh-PK 784 CG42311-PK 541..721 1..150 767 82.9 Plus