Clone Sequence Records
BS01012.5prime Sequence
499 bp (498 high quality bases) assembled on 2005-11-30
> BS01012.5prime
GAAGTTATCAGTCGACATGACAGCCACGGGCAGAAAGAAGCTGGACGAGC
TTTACCATCCGGTAACGGATCGGTCCGAGTTCTATGGCATGCAGGACTTC
GCCAAGCCGCCGGTGCTATTCTCGCCCGCCGAGGACATGGAGAAGAGCTT
CTACGGCCATGAGACTGACTCGCCGGACCTGAAGGGGGCCTCACCGTTCC
TGCTCCACGGCCAGAAGGTGGCCACGCCGACGCTCAAGTTCCACAACCAT
TTTCCGCCCGACATGCAGACCGATAAGAAGGATCACATACTGGACCAGAA
CATGTTGACCAGCACACCCCTGACCGACTTTGGTCCGCCGATGAAGCGCG
GCAGGATGACGCCGCCGACCTCGGAACGCGTGATGCTGTACGTGCGGCAG
GAGAACGAGGAGGTGTATACACCGTTGCACGTGGTGCCGCCCACCACGAT
CGGCCTGCTAAATGCGGATTACTGCGAAAATTGACGAGCTTTCTAGACC
BS01012.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:43:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5058-PF | 468 | grh-RF | 1..468 | 17..484 | 2340 | 100 | Plus |
CG5058-PC | 3909 | grh-RC | 3268..3717 | 17..466 | 2250 | 100 | Plus |
CG5058-PB | 3099 | grh-RB | 2458..2907 | 17..466 | 2250 | 100 | Plus |
CG5058-PG | 2190 | grh-RG | 1676..1998 | 144..466 | 1615 | 100 | Plus |
CG5058-PA | 3192 | grh-RA | 2678..3000 | 144..466 | 1615 | 100 | Plus |
CG5058-PD | 4002 | grh-RD | 3488..3810 | 144..466 | 1615 | 100 | Plus |
CG5058-PG | 2190 | grh-RG | 1456..1584 | 17..145 | 645 | 100 | Plus |
CG5058-PA | 3192 | grh-RA | 2458..2586 | 17..145 | 645 | 100 | Plus |
CG5058-PD | 4002 | grh-RD | 3268..3396 | 17..145 | 645 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:24:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
grh-RO | 3094 | CG42311-RO | 1799..2248 | 17..466 | 2250 | 100 | Plus |
grh-RL | 6692 | CG42311-RL | 4105..4554 | 17..466 | 2250 | 100 | Plus |
grh-RH | 3972 | CG42311-RH | 3295..3744 | 17..466 | 2250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:24:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17839594..17839790 | 271..467 | 985 | 100 | Plus |
2R | 25286936 | 2R | 17839093..17839221 | 17..145 | 645 | 100 | Plus |
2R | 25286936 | 2R | 17839313..17839439 | 144..270 | 635 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:24:30 has no hits.
BS01012.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:58:11 Download gff for
BS01012.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grh-PF | 1..468 | 17..484 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:04:25 Download gff for
BS01012.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5058-PF | 1..468 | 17..484 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:24:25 Download gff for
BS01012.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grh-RH | 3295..3741 | 17..463 | 100 | -> | Plus |
grh-RH | 3808..3830 | 464..487 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:23:02 Download gff for
BS01012.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grh-RH | 3295..3741 | 17..463 | 100 | -> | Plus |
grh-RH | 3808..3830 | 464..487 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:23:02 Download gff for
BS01012.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17840748..17840768 | 467..487 | 100 | | Plus |
2R | 17839093..17839221 | 17..145 | 100 | -> | Plus |
2R | 17839315..17839439 | 146..270 | 100 | -> | Plus |
2R | 17839594..17839789 | 271..466 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:24:25 Download gff for
BS01012.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13726598..13726726 | 17..145 | 100 | -> | Plus |
arm_2R | 13726820..13726944 | 146..270 | 100 | -> | Plus |
arm_2R | 13727099..13727294 | 271..466 | 100 | -> | Plus |
arm_2R | 13728253..13728273 | 467..487 | 100 | | Plus |
BS01012.3prime Sequence
499 bp (498 high quality bases) assembled on 2005-11-30
> BS01012.3prime
ATGGTCTAGAAAGCTCGTCAATTTTCGCAGTAATCCGCATTTAGCAGGCC
GATCGTGGTGGGCGGCACCACGTGCAACGGTGTATACACCTCCTCGTTCT
CCTGCCGCACGTACAGCATCACGCGTTCCGAGGTCGGCGGCGTCATCCTG
CCGCGCTTCATCGGCGGACCAAAGTCGGTCAGGGGTGTGCTGGTCAACAT
GTTCTGGTCCAGTATGTGATCCTTCTTATCGGTCTGCATGTCGGGCGGAA
AATGGTTGTGGAACTTGAGCGTCGGCGTGGCCACCTTCTGGCCGTGGAGC
AGGAACGGTGAGGCCCCCTTCAGGTCCGGCGAGTCAGTCTCATGGCCGTA
GAAGCTCTTCTCCATGTCCTCGGCGGGCGAGAATAGCACCGGCGGCTTGG
CGAAGTCCTGCATGCCATAGAACTCGGACCGATCCGTTACCGGATGGTAA
AGCTCGTCCAGCTTCTTTCTGCCCGTGGCTGTCATGTCGACTGATAACT
BS01012.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:43:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5058-PF | 468 | grh-RF | 1..468 | 485..18 | 2340 | 100 | Minus |
CG5058-PC | 3909 | grh-RC | 3268..3717 | 485..36 | 2250 | 100 | Minus |
CG5058-PB | 3099 | grh-RB | 2458..2907 | 485..36 | 2250 | 100 | Minus |
CG5058-PG | 2190 | grh-RG | 1676..1998 | 358..36 | 1615 | 100 | Minus |
CG5058-PA | 3192 | grh-RA | 2678..3000 | 358..36 | 1615 | 100 | Minus |
CG5058-PD | 4002 | grh-RD | 3488..3810 | 358..36 | 1615 | 100 | Minus |
CG5058-PG | 2190 | grh-RG | 1456..1584 | 485..357 | 645 | 100 | Minus |
CG5058-PA | 3192 | grh-RA | 2458..2586 | 485..357 | 645 | 100 | Minus |
CG5058-PD | 4002 | grh-RD | 3268..3396 | 485..357 | 645 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:55:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
grh-RO | 3094 | CG42311-RO | 1799..2248 | 485..36 | 2250 | 100 | Minus |
grh-RL | 6692 | CG42311-RL | 4105..4554 | 485..36 | 2250 | 100 | Minus |
grh-RH | 3972 | CG42311-RH | 3295..3744 | 485..36 | 2250 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:55:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17839594..17839790 | 231..35 | 985 | 100 | Minus |
2R | 25286936 | 2R | 17839093..17839221 | 485..357 | 645 | 100 | Minus |
2R | 25286936 | 2R | 17839313..17839439 | 358..232 | 635 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:55:40 has no hits.
BS01012.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:58:10 Download gff for
BS01012.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grh-PF | 1..468 | 18..485 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:04:23 Download gff for
BS01012.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5058-PF | 1..468 | 18..485 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:07:56 Download gff for
BS01012.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grh-RH | 3295..3741 | 39..485 | 100 | -> | Minus |
grh-RH | 3808..3830 | 15..38 | 95 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:04:50 Download gff for
BS01012.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grh-RH | 3295..3741 | 39..485 | 100 | -> | Minus |
grh-RH | 3808..3830 | 15..38 | 95 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:04:50 Download gff for
BS01012.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17839093..17839221 | 357..485 | 100 | -> | Minus |
2R | 17839315..17839439 | 232..356 | 100 | -> | Minus |
2R | 17839594..17839789 | 36..231 | 100 | -> | Minus |
2R | 17840748..17840768 | 15..35 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:07:56 Download gff for
BS01012.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13726598..13726726 | 357..485 | 100 | -> | Minus |
arm_2R | 13726820..13726944 | 232..356 | 100 | -> | Minus |
arm_2R | 13727099..13727294 | 36..231 | 100 | -> | Minus |
arm_2R | 13728253..13728273 | 15..35 | 100 | | Minus |
BS01012.complete Sequence
501 bp assembled on 2008-08-15
GenBank Submission: FJ634493
> BS01012.complete
GAAGTTATCAGTCGACATGACAGCCACGGGCAGAAAGAAGCTGGACGAGC
TTTACCATCCGGTAACGGATCGGTCCGAGTTCTATGGCATGCAGGACTTC
GCCAAGCCGCCGGTGCTATTCTCGCCCGCCGAGGACATGGAGAAGAGCTT
CTACGGCCATGAGACTGACTCGCCGGACCTGAAGGGGGCCTCACCGTTCC
TGCTCCACGGCCAGAAGGTGGCCACGCCGACGCTCAAGTTCCACAACCAT
TTTCCGCCCGACATGCAGACCGATAAGAAGGATCACATACTGGACCAGAA
CATGTTGACCAGCACACCCCTGACCGACTTTGGTCCGCCGATGAAGCGCG
GCAGGATGACGCCGCCGACCTCGGAACGCGTGATGCTGTACGTGCGGCAG
GAGAACGAGGAGGTGTATACACCGTTGCACGTGGTGCCGCCCACCACGAT
CGGCCTGCTAAATGCGGATTACTGCGAAAATTGACGAGCTTTCTAGACCA
T
BS01012.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:56:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
grh-RO | 2097 | CG42311-PO | 1456..1905 | 17..466 | 2250 | 100 | Plus |
grh-RL | 3909 | CG42311-PL | 3268..3717 | 17..466 | 2250 | 100 | Plus |
grh-RH | 3099 | CG42311-PH | 2458..2907 | 17..466 | 2250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:56:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
grh-RO | 3094 | CG42311-RO | 1799..2248 | 17..466 | 2250 | 100 | Plus |
grh-RL | 6692 | CG42311-RL | 4105..4554 | 17..466 | 2250 | 100 | Plus |
grh-RH | 3972 | CG42311-RH | 3295..3744 | 17..466 | 2250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:56:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17839594..17839790 | 271..467 | 985 | 100 | Plus |
2R | 25286936 | 2R | 17839093..17839221 | 17..145 | 645 | 100 | Plus |
2R | 25286936 | 2R | 17839313..17839439 | 144..270 | 635 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:56:53 has no hits.
BS01012.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:54:40 Download gff for
BS01012.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grh-RE | 447..917 | 17..487 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:41:45 Download gff for
BS01012.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grh-RH | 3295..3741 | 17..463 | 100 | -> | Plus |
grh-RH | 3808..3828 | 464..485 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:12:07 Download gff for
BS01012.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grh-RE | 447..915 | 17..485 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:46:39 Download gff for
BS01012.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grh-RH | 3295..3741 | 17..463 | 100 | -> | Plus |
grh-RH | 3808..3828 | 464..485 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:46:39 Download gff for
BS01012.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17839594..17839789 | 271..466 | 100 | -> | Plus |
2R | 17840748..17840766 | 467..485 | 100 | | Plus |
2R | 17839093..17839221 | 17..145 | 100 | -> | Plus |
2R | 17839315..17839439 | 146..270 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:41:45 Download gff for
BS01012.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13726598..13726726 | 17..145 | 100 | -> | Plus |
arm_2R | 13726820..13726944 | 146..270 | 100 | -> | Plus |
arm_2R | 13727099..13727294 | 271..466 | 100 | -> | Plus |
arm_2R | 13728253..13728271 | 467..485 | 100 | | Plus |
BS01012.pep Sequence
Translation from 16 to 483
> BS01012.pep
MTATGRKKLDELYHPVTDRSEFYGMQDFAKPPVLFSPAEDMEKSFYGHET
DSPDLKGASPFLLHGQKVATPTLKFHNHFPPDMQTDKKDHILDQNMLTST
PLTDFGPPMKRGRMTPPTSERVMLYVRQENEEVYTPLHVVPPTTIGLLNA
DYCEN*
BS01012.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:41:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
grh-PO | 698 | CG42311-PO | 486..635 | 1..150 | 809 | 100 | Plus |
grh-PH | 1032 | CG42311-PH | 820..969 | 1..150 | 809 | 100 | Plus |
grh-PL | 1302 | CG42311-PL | 1090..1239 | 1..150 | 809 | 100 | Plus |
grh-PN | 729 | CG42311-PN | 486..666 | 1..150 | 767 | 82.9 | Plus |
grh-PK | 784 | CG42311-PK | 541..721 | 1..150 | 767 | 82.9 | Plus |