Clone Sequence Records
BS01014.3prime Sequence
515 bp (514 high quality bases) assembled on 2005-11-30
> BS01014.3prime
ATGGTCTAGAAAGCTTCGCTACATAAAACAGTTGTCAGCGCCTAGCCAGA
GATTCGGATTGAAGAAGGGGGAGCGCGGCGGATACTTCCTCTTTGGTGGA
GGACACAAGATGGGATCCAGCTTATAATCGTTTGTTGTGTCTAGACTTCT
GGGAGAGTAGTGCTGCCAATCTAAGGACTTCTCATCTGGTTGGTAGCCAT
CGGTCGCGTGCTCAATCTTCACGTGTACCTTGAGATGATCCTGGAGGAGG
AATACCTTGTCGCAGAGCTGGCATTGAAAGTGTCCCTCTGTGTTGGGCAC
ATGGGCTTCATGGTATCTTTTATAGTGCTGGTGCAGTTCCAGCGAGGATC
GCATCGTGCGCCCGCATATATCGCATGTTTGACCAGTGCTCACAGGCTGC
GGAAAGTGGGTGGGGAGGTGTTCGTCCAGCTTCTCAGTGGCATCAAAAGT
CTGCTCGCACAGCAGACAGGAAAGTTGCACTTCAGCCAACGCCGTTTCCA
TGTCGACTGATAACT
BS01014.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:43:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12744-PA | 483 | CG12744-RA | 1..483 | 501..19 | 2415 | 100 | Minus |
CG12744-PB | 483 | CG12744-RB | 1..483 | 501..19 | 2415 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:22:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12744-RB | 839 | CG12744-RB | 167..649 | 501..19 | 2415 | 100 | Minus |
CG12744-RA | 906 | CG12744-RA | 234..716 | 501..19 | 2415 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 14:22:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9875514..9875960 | 501..55 | 2235 | 100 | Minus |
2R | 25286936 | 2R | 9876016..9876052 | 55..19 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 14:22:13 has no hits.
BS01014.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:58:14 Download gff for
BS01014.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12744-PA | 1..483 | 19..501 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:04:29 Download gff for
BS01014.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12744-PB | 1..483 | 19..501 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:09:41 Download gff for
BS01014.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12744-RA | 234..716 | 19..501 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:56:38 Download gff for
BS01014.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12744-RA | 234..716 | 19..501 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:56:38 Download gff for
BS01014.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9875514..9875959 | 56..501 | 100 | -> | Minus |
2R | 9876016..9876052 | 19..55 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:09:41 Download gff for
BS01014.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5763521..5763557 | 19..55 | 100 | | Minus |
arm_2R | 5763019..5763464 | 56..501 | 100 | -> | Minus |
BS01014.5prime Sequence
515 bp (514 high quality bases) assembled on 2005-11-30
> BS01014.5prime
GAAGTTATCAGTCGACATGGAAACGGCGTTGGCTGAAGTGCAACTTTCCT
GTCTGCTGTGCGAGCAGACTTTTGATGCCACTGAGAAGCTGGACGAACAC
CTCCCCACCCACTTTCCGCAGCCTGTGAGCACTGGTCAAACATGCGATAT
ATGCGGGCGCACGATGCGATCCTCGCTGGAACTGCACCAGCACTATAAAA
GATACCATGAAGCCCATGTGCCCAACACAGAGGGACACTTTCAATGCCAG
CTCTGCGACAAGGTATTCCTCCTCCAGGATCATCTCAAGGTACACGTGAA
GATTGAGCACGCGACCGATGGCTACCAACCAGATGAGAAGTCCTTAGATT
GGCAGCACTACTCTCCCAGAAGTCTAGACACAACAAACGATTATAAGCTG
GATCCCATCTTGTGTCCTCCACCAAAGAGGAAGTATCCGCCGCGCTCCCC
CTTCTTCAATCCGAATCTCTGGCTAGGCGCTGACAACTGTTTTATGTAGC
GAAGCTTTCTAGACC
BS01014.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:43:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12744-PA | 483 | CG12744-RA | 1..483 | 17..499 | 2415 | 100 | Plus |
CG12744-PB | 483 | CG12744-RB | 1..483 | 17..499 | 2415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:08:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12744-RB | 839 | CG12744-RB | 167..649 | 17..499 | 2415 | 100 | Plus |
CG12744-RA | 906 | CG12744-RA | 234..716 | 17..499 | 2415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:08:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9875514..9875960 | 17..463 | 2235 | 100 | Plus |
2R | 25286936 | 2R | 9876016..9876052 | 463..499 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:08:27 has no hits.
BS01014.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:58:15 Download gff for
BS01014.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12744-PA | 1..483 | 17..499 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:04:30 Download gff for
BS01014.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12744-PB | 1..483 | 17..499 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:41:25 Download gff for
BS01014.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12744-RA | 234..716 | 17..499 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:11:06 Download gff for
BS01014.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12744-RA | 234..716 | 17..499 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:11:06 Download gff for
BS01014.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9875514..9875959 | 17..462 | 100 | -> | Plus |
2R | 9876016..9876052 | 463..499 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:41:25 Download gff for
BS01014.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5763019..5763464 | 17..462 | 100 | -> | Plus |
arm_2R | 5763521..5763557 | 463..499 | 100 | | Plus |
BS01014.complete Sequence
517 bp (517 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634494
> BS01014.complete
GAAGTTATCAGTCGACATGGAAACGGCGTTGGCTGAAGTGCAACTTTCCT
GTCTGCTGTGCGAGCAGACTTTTGATGCCACTGAGAAGCTGGACGAACAC
CTCCCCACCCACTTTCCGCAGCCTGTGAGCACTGGTCAAACATGCGATAT
ATGCGGGCGCACGATGCGATCCTCGCTGGAACTGCACCAGCACTATAAAA
GATACCATGAAGCCCATGTGCCCAACACAGAGGGACACTTTCAATGCCAG
CTCTGCGACAAGGTATTCCTCCTCCAGGATCATCTCAAGGTACACGTGAA
GATTGAGCACGCGACCGATGGCTACCAACCAGATGAGAAGTCCTTAGATT
GGCAGCACTACTCTCCCAGAAGTCTAGACACAACAAACGATTATAAGCTG
GATCCCATCTTGTGTCCTCCACCAAAGAGGAAGTATCCGCCGCGCTCCCC
CTTCTTCAATCCGAATCTCTGGCTAGGCGCTGACAACTGTTTTATGTAGC
GAAGCTTTCTAGACCAT
BS01014.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:54:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12744-RB | 483 | CG12744-PB | 1..483 | 17..499 | 2415 | 100 | Plus |
CG12744-RA | 483 | CG12744-PA | 1..483 | 17..499 | 2415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:54:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12744-RB | 839 | CG12744-RB | 167..649 | 17..499 | 2415 | 100 | Plus |
CG12744-RA | 906 | CG12744-RA | 234..716 | 17..499 | 2415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:54:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9875514..9875960 | 17..463 | 2235 | 100 | Plus |
2R | 25286936 | 2R | 9876016..9876052 | 463..499 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:54:31 has no hits.
BS01014.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:32 Download gff for
BS01014.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12744-RB | 1..483 | 17..499 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:40:16 Download gff for
BS01014.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12744-RA | 231..713 | 17..499 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:34:00 Download gff for
BS01014.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12744-RA | 234..718 | 17..501 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:32 Download gff for
BS01014.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12744-RA | 231..713 | 17..499 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:40:17 Download gff for
BS01014.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12744-RA | 234..718 | 17..501 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:40:17 Download gff for
BS01014.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9875514..9875959 | 17..462 | 100 | -> | Plus |
2R | 9876016..9876054 | 463..501 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:34:00 Download gff for
BS01014.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5763521..5763559 | 463..501 | 97 | | Plus |
arm_2R | 5763019..5763464 | 17..462 | 100 | -> | Plus |
BS01014.pep Sequence
Translation from 16 to 498
> BS01014.pep
METALAEVQLSCLLCEQTFDATEKLDEHLPTHFPQPVSTGQTCDICGRTM
RSSLELHQHYKRYHEAHVPNTEGHFQCQLCDKVFLLQDHLKVHVKIEHAT
DGYQPDEKSLDWQHYSPRSLDTTNDYKLDPILCPPPKRKYPPRSPFFNPN
LWLGADNCFM*
BS01014.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:23:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12744-PB | 160 | CG12744-PB | 1..160 | 1..160 | 905 | 100 | Plus |
CG12744-PA | 160 | CG12744-PA | 1..160 | 1..160 | 905 | 100 | Plus |