Clone BS01014 Report

Search the DGRC for BS01014

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:10
Well:14
Vector:pDNR-Dual
Associated Gene/TranscriptCG12744-RA
Protein status:BS01014.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01014.3prime Sequence

515 bp (514 high quality bases) assembled on 2005-11-30

> BS01014.3prime
ATGGTCTAGAAAGCTTCGCTACATAAAACAGTTGTCAGCGCCTAGCCAGA
GATTCGGATTGAAGAAGGGGGAGCGCGGCGGATACTTCCTCTTTGGTGGA
GGACACAAGATGGGATCCAGCTTATAATCGTTTGTTGTGTCTAGACTTCT
GGGAGAGTAGTGCTGCCAATCTAAGGACTTCTCATCTGGTTGGTAGCCAT
CGGTCGCGTGCTCAATCTTCACGTGTACCTTGAGATGATCCTGGAGGAGG
AATACCTTGTCGCAGAGCTGGCATTGAAAGTGTCCCTCTGTGTTGGGCAC
ATGGGCTTCATGGTATCTTTTATAGTGCTGGTGCAGTTCCAGCGAGGATC
GCATCGTGCGCCCGCATATATCGCATGTTTGACCAGTGCTCACAGGCTGC
GGAAAGTGGGTGGGGAGGTGTTCGTCCAGCTTCTCAGTGGCATCAAAAGT
CTGCTCGCACAGCAGACAGGAAAGTTGCACTTCAGCCAACGCCGTTTCCA
TGTCGACTGATAACT

BS01014.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:43:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG12744-PA 483 CG12744-RA 1..483 501..19 2415 100 Minus
CG12744-PB 483 CG12744-RB 1..483 501..19 2415 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:22:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG12744-RB 839 CG12744-RB 167..649 501..19 2415 100 Minus
CG12744-RA 906 CG12744-RA 234..716 501..19 2415 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 14:22:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9875514..9875960 501..55 2235 100 Minus
2R 25286936 2R 9876016..9876052 55..19 185 100 Minus
Blast to na_te.dros performed on 2015-02-03 14:22:13 has no hits.

BS01014.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:58:14 Download gff for BS01014.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12744-PA 1..483 19..501 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:04:29 Download gff for BS01014.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12744-PB 1..483 19..501 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:09:41 Download gff for BS01014.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12744-RA 234..716 19..501 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:56:38 Download gff for BS01014.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12744-RA 234..716 19..501 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:56:38 Download gff for BS01014.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9875514..9875959 56..501 100 -> Minus
2R 9876016..9876052 19..55 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:09:41 Download gff for BS01014.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5763521..5763557 19..55 100   Minus
arm_2R 5763019..5763464 56..501 100 -> Minus

BS01014.5prime Sequence

515 bp (514 high quality bases) assembled on 2005-11-30

> BS01014.5prime
GAAGTTATCAGTCGACATGGAAACGGCGTTGGCTGAAGTGCAACTTTCCT
GTCTGCTGTGCGAGCAGACTTTTGATGCCACTGAGAAGCTGGACGAACAC
CTCCCCACCCACTTTCCGCAGCCTGTGAGCACTGGTCAAACATGCGATAT
ATGCGGGCGCACGATGCGATCCTCGCTGGAACTGCACCAGCACTATAAAA
GATACCATGAAGCCCATGTGCCCAACACAGAGGGACACTTTCAATGCCAG
CTCTGCGACAAGGTATTCCTCCTCCAGGATCATCTCAAGGTACACGTGAA
GATTGAGCACGCGACCGATGGCTACCAACCAGATGAGAAGTCCTTAGATT
GGCAGCACTACTCTCCCAGAAGTCTAGACACAACAAACGATTATAAGCTG
GATCCCATCTTGTGTCCTCCACCAAAGAGGAAGTATCCGCCGCGCTCCCC
CTTCTTCAATCCGAATCTCTGGCTAGGCGCTGACAACTGTTTTATGTAGC
GAAGCTTTCTAGACC

BS01014.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:43:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG12744-PA 483 CG12744-RA 1..483 17..499 2415 100 Plus
CG12744-PB 483 CG12744-RB 1..483 17..499 2415 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:08:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG12744-RB 839 CG12744-RB 167..649 17..499 2415 100 Plus
CG12744-RA 906 CG12744-RA 234..716 17..499 2415 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:08:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9875514..9875960 17..463 2235 100 Plus
2R 25286936 2R 9876016..9876052 463..499 185 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:08:27 has no hits.

BS01014.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:58:15 Download gff for BS01014.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12744-PA 1..483 17..499 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:04:30 Download gff for BS01014.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12744-PB 1..483 17..499 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:41:25 Download gff for BS01014.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12744-RA 234..716 17..499 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:11:06 Download gff for BS01014.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12744-RA 234..716 17..499 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:11:06 Download gff for BS01014.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9875514..9875959 17..462 100 -> Plus
2R 9876016..9876052 463..499 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:41:25 Download gff for BS01014.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5763019..5763464 17..462 100 -> Plus
arm_2R 5763521..5763557 463..499 100   Plus

BS01014.complete Sequence

517 bp (517 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634494

> BS01014.complete
GAAGTTATCAGTCGACATGGAAACGGCGTTGGCTGAAGTGCAACTTTCCT
GTCTGCTGTGCGAGCAGACTTTTGATGCCACTGAGAAGCTGGACGAACAC
CTCCCCACCCACTTTCCGCAGCCTGTGAGCACTGGTCAAACATGCGATAT
ATGCGGGCGCACGATGCGATCCTCGCTGGAACTGCACCAGCACTATAAAA
GATACCATGAAGCCCATGTGCCCAACACAGAGGGACACTTTCAATGCCAG
CTCTGCGACAAGGTATTCCTCCTCCAGGATCATCTCAAGGTACACGTGAA
GATTGAGCACGCGACCGATGGCTACCAACCAGATGAGAAGTCCTTAGATT
GGCAGCACTACTCTCCCAGAAGTCTAGACACAACAAACGATTATAAGCTG
GATCCCATCTTGTGTCCTCCACCAAAGAGGAAGTATCCGCCGCGCTCCCC
CTTCTTCAATCCGAATCTCTGGCTAGGCGCTGACAACTGTTTTATGTAGC
GAAGCTTTCTAGACCAT

BS01014.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:54:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG12744-RB 483 CG12744-PB 1..483 17..499 2415 100 Plus
CG12744-RA 483 CG12744-PA 1..483 17..499 2415 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:54:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG12744-RB 839 CG12744-RB 167..649 17..499 2415 100 Plus
CG12744-RA 906 CG12744-RA 234..716 17..499 2415 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:54:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9875514..9875960 17..463 2235 100 Plus
2R 25286936 2R 9876016..9876052 463..499 185 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:54:31 has no hits.

BS01014.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:32 Download gff for BS01014.complete
Subject Subject Range Query Range Percent Splice Strand
CG12744-RB 1..483 17..499 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:40:16 Download gff for BS01014.complete
Subject Subject Range Query Range Percent Splice Strand
CG12744-RA 231..713 17..499 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:34:00 Download gff for BS01014.complete
Subject Subject Range Query Range Percent Splice Strand
CG12744-RA 234..718 17..501 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:32 Download gff for BS01014.complete
Subject Subject Range Query Range Percent Splice Strand
CG12744-RA 231..713 17..499 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:40:17 Download gff for BS01014.complete
Subject Subject Range Query Range Percent Splice Strand
CG12744-RA 234..718 17..501 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:40:17 Download gff for BS01014.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9875514..9875959 17..462 100 -> Plus
2R 9876016..9876054 463..501 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:34:00 Download gff for BS01014.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5763521..5763559 463..501 97   Plus
arm_2R 5763019..5763464 17..462 100 -> Plus

BS01014.pep Sequence

Translation from 16 to 498

> BS01014.pep
METALAEVQLSCLLCEQTFDATEKLDEHLPTHFPQPVSTGQTCDICGRTM
RSSLELHQHYKRYHEAHVPNTEGHFQCQLCDKVFLLQDHLKVHVKIEHAT
DGYQPDEKSLDWQHYSPRSLDTTNDYKLDPILCPPPKRKYPPRSPFFNPN
LWLGADNCFM*

BS01014.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:23:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG12744-PB 160 CG12744-PB 1..160 1..160 905 100 Plus
CG12744-PA 160 CG12744-PA 1..160 1..160 905 100 Plus