Clone Sequence Records
BS01018.3prime Sequence
602 bp (601 high quality bases) assembled on 2005-11-30
> BS01018.3prime
ATGGTCTAGAAAGCTTCGTTAGGACATGGGACCATTGGCTGTGACTACCG
ATGCTGCTGCTGCCGCTGCTGATGTCACCTGCTGCACCTGCTGCTCCACC
GATACCGCTGCTGACTCGACTGCACTGCTGCCGTTCTCGGCGCTGCCGTT
GGGAATGCTCGTGGGTACCACCGCGGACGCTGGACTGGTGGCCACACCCG
TTACCGCTACCGCTCCAGCGGCCTGCTGCTGAACTGCCTGACCCGCGGCA
GCTGGAGCAACGACACTTTGTACCGCCGGTGCCGCTTGAATGGCGGGCGT
GGCCGGCGGTGCGGCGAGTTGTAGCTGCAACTGCAGCTGCTGCAGTGTCT
CCTGCGGGATGTTCGACTTGAGAATGCTGTTCTCGAGCTCCAGCTTGTTG
ATCTTGTCCATCAGCTCGGAGATGCGCTCTTTTAGCACTTCCACCTCCTC
GCGCACCGCTATCATGAGATGCGACTTGACCAGATCTTTTGCATTAGGCA
CCATCACATAGCAGGGGCTGTCGTAGCCCTTCTGCCAAATCTCGTATAGC
CAATTCTCTGGCTGGCGCAGCGACATAGTGCCCATCATGTCGACTGATAA
CT
BS01018.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:43:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5461-PC | 570 | bun-RC | 1..570 | 588..19 | 2850 | 100 | Minus |
CG5461-PD | 681 | bun-RD | 214..681 | 486..19 | 2340 | 100 | Minus |
CG5461-PE | 765 | bun-RE | 298..765 | 486..19 | 2340 | 100 | Minus |
CG5461-PF | 3294 | bun-RF | 2827..3294 | 486..19 | 2340 | 100 | Minus |
CG5461-PA | 3621 | bun-RA | 3154..3621 | 486..19 | 2340 | 100 | Minus |
CG5461-PB | 660 | bun-RB | 193..660 | 486..19 | 2340 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:35:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bun-RP | 5139 | CG42281-RP | 3391..3960 | 588..19 | 2850 | 100 | Minus |
bun-RC | 1754 | CG5461-RC | 567..1136 | 588..19 | 2850 | 100 | Minus |
bun-RO | 3490 | CG42281-RO | 807..1274 | 486..19 | 2340 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:35:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12457756..12458223 | 19..486 | 2340 | 100 | Plus |
2L | 23513712 | 2L | 12460588..12460690 | 486..588 | 515 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 19:35:32 has no hits.
BS01018.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:58:22 Download gff for
BS01018.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bun-PC | 1..570 | 19..588 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:04:38 Download gff for
BS01018.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5461-PC | 1..570 | 19..588 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:25:59 Download gff for
BS01018.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bun-RC | 559..1142 | 11..595 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:43:13 Download gff for
BS01018.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bun-RC | 559..1142 | 11..595 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:43:13 Download gff for
BS01018.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12457750..12458223 | 11..486 | 99 | <- | Plus |
2L | 12460589..12460698 | 487..595 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:25:59 Download gff for
BS01018.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12457750..12458223 | 11..486 | 99 | <- | Plus |
arm_2L | 12460589..12460698 | 487..595 | 96 | | Plus |
BS01018.5prime Sequence
602 bp (601 high quality bases) assembled on 2005-11-30
> BS01018.5prime
GAAGTTATCAGTCGACATGATGGGCACTATGTCGCTGCGCCAGCCAGAGA
ATTGGCTATACGAGATTTGGCAGAAGGGCTACGACAGCCCCTGCTATGTG
ATGGTGCCTAATGCAAAAGATCTGGTCAAGTCGCATCTCATGATAGCGGT
GCGCGAGGAGGTGGAAGTGCTAAAAGAGCGCATCTCCGAGCTGATGGACA
AGATCAACAAGCTGGAGCTCGAGAACAGCATTCTCAAGTCGAACATCCCG
CAGGAGACACTGCAGCAGCTGCAGTTGCAGCTACAACTCGCCGCACCGCC
GGCCACGCCCGCCATTCAAGCGGCACCGGCGGTACAAAGTGTCGTTGCTC
CAGCTGCCGCGGGTCAGGCAGTTCAGCAGCAGGCCGCTGGAGCGGTAGCG
GTAACGGGTGTGGCCACCAGTCCAGCGTCCGCGGTGGTACCCACGAGCAT
TCCCAACGGCAGCGCCGAGAACGGCAGCAGTGCAGTCGAGTCAGCAGCGG
TATCGGTGGAGCAGCAGGTGCAGCAGGTGACATCAGCAGCGGCAGCAGCA
GCATCGGTAGTCACAGCCAATGGTCCCATGTCCTAACGAAGCTTTCTAGA
CC
BS01018.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:43:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5461-PC | 570 | bun-RC | 1..570 | 17..586 | 2850 | 100 | Plus |
CG5461-PD | 681 | bun-RD | 214..681 | 119..586 | 2340 | 100 | Plus |
CG5461-PE | 765 | bun-RE | 298..765 | 119..586 | 2340 | 100 | Plus |
CG5461-PF | 3294 | bun-RF | 2827..3294 | 119..586 | 2340 | 100 | Plus |
CG5461-PA | 3621 | bun-RA | 3154..3621 | 119..586 | 2340 | 100 | Plus |
CG5461-PB | 660 | bun-RB | 193..660 | 119..586 | 2340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:41:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bun-RP | 5139 | CG42281-RP | 3391..3960 | 17..586 | 2850 | 100 | Plus |
bun-RC | 1754 | CG5461-RC | 567..1136 | 17..586 | 2850 | 100 | Plus |
bun-RO | 3490 | CG42281-RO | 807..1274 | 119..586 | 2340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:41:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12457756..12458223 | 586..119 | 2340 | 100 | Minus |
2L | 23513712 | 2L | 12460588..12460690 | 119..17 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:41:43 has no hits.
BS01018.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:58:23 Download gff for
BS01018.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bun-PC | 1..570 | 17..586 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:04:39 Download gff for
BS01018.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5461-PC | 1..570 | 17..586 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:19:14 Download gff for
BS01018.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bun-RC | 559..1142 | 10..594 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:56:26 Download gff for
BS01018.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bun-RC | 559..1142 | 10..594 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:56:26 Download gff for
BS01018.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12457750..12458223 | 119..594 | 99 | <- | Minus |
2L | 12460589..12460698 | 10..118 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:19:14 Download gff for
BS01018.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12457750..12458223 | 119..594 | 99 | <- | Minus |
arm_2L | 12460589..12460698 | 10..118 | 96 | | Minus |
BS01018.complete Sequence
604 bp (604 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634496
> BS01018.complete
GAAGTTATCAGTCGACATGATGGGCACTATGTCGCTGCGCCAGCCAGAGA
ATTGGCTATACGAGATTTGGCAGAAGGGCTACGACAGCCCCTGCTATGTG
ATGGTGCCTAATGCAAAAGATCTGGTCAAGTCGCATCTCATGATAGCGGT
GCGCGAGGAGGTGGAAGTGCTAAAAGAGCGCATCTCCGAGCTGATGGACA
AGATCAACAAGCTGGAGCTCGAGAACAGCATTCTCAAGTCGAACATCCCG
CAGGAGACACTGCAGCAGCTGCAGTTGCAGCTACAACTCGCCGCACCGCC
GGCCACGCCCGCCATTCAAGCGGCACCGGCGGTACAAAGTGTCGTTGCTC
CAGCTGCCGCGGGTCAGGCAGTTCAGCAGCAGGCCGCTGGAGCGGTAGCG
GTAACGGGTGTGGCCACCAGTCCAGCGTCCGCGGTGGTACCCACGAGCAT
TCCCAACGGCAGCGCCGAGAACGGCAGCAGTGCAGTCGAGTCAGCAGCGG
TATCGGTGGAGCAGCAGGTGCAGCAGGTGACATCAGCAGCGGCAGCAGCA
GCATCGGTAGTCACAGCCAATGGTCCCATGTCCTAACGAAGCTTTCTAGA
CCAT
BS01018.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:21:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bun-RP | 3414 | CG42281-PP | 2845..3414 | 17..586 | 2850 | 100 | Plus |
bun-RC | 570 | CG42281-PC | 1..570 | 17..586 | 2850 | 100 | Plus |
bun-RO | 579 | CG42281-PO | 112..579 | 119..586 | 2340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:21:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bun-RP | 5139 | CG42281-RP | 3391..3960 | 17..586 | 2850 | 100 | Plus |
bun-RC | 1754 | CG5461-RC | 567..1136 | 17..586 | 2850 | 100 | Plus |
bun-RO | 3490 | CG42281-RO | 807..1274 | 119..586 | 2340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:21:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12457756..12458223 | 586..119 | 2340 | 100 | Minus |
2L | 23513712 | 2L | 12460588..12460690 | 119..17 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:21:13 has no hits.
BS01018.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:39 Download gff for
BS01018.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bun-RI | 1..570 | 17..586 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:22:00 Download gff for
BS01018.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bun-RI | 540..1123 | 10..594 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:55:10 Download gff for
BS01018.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bun-RC | 567..1136 | 17..588 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:39 Download gff for
BS01018.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bun-RI | 540..1123 | 10..594 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:58:27 Download gff for
BS01018.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bun-RC | 567..1136 | 17..588 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:58:27 Download gff for
BS01018.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12457752..12458223 | 119..588 | 99 | <- | Minus |
2L | 12460589..12460690 | 17..118 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:55:10 Download gff for
BS01018.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12457752..12458223 | 119..588 | 99 | <- | Minus |
arm_2L | 12460589..12460690 | 17..118 | 100 | | Minus |
BS01018.pep Sequence
Translation from 16 to 585
> BS01018.pep
MMGTMSLRQPENWLYEIWQKGYDSPCYVMVPNAKDLVKSHLMIAVREEVE
VLKERISELMDKINKLELENSILKSNIPQETLQQLQLQLQLAAPPATPAI
QAAPAVQSVVAPAAAGQAVQQQAAGAVAVTGVATSPASAVVPTSIPNGSA
ENGSSAVESAAVSVEQQVQQVTSAAAAAASVVTANGPMS*
BS01018.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:42:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bun-PC | 189 | CG5461-PC | 1..189 | 1..189 | 921 | 100 | Plus |
bun-PP | 1137 | CG42281-PP | 949..1137 | 1..189 | 921 | 100 | Plus |
bun-PO | 192 | CG42281-PO | 33..192 | 30..189 | 731 | 97.5 | Plus |
bun-PB | 219 | CG5461-PB | 60..219 | 30..189 | 731 | 97.5 | Plus |
bun-PH | 226 | CG42281-PN | 67..226 | 30..189 | 731 | 97.5 | Plus |