Clone BS01018 Report

Search the DGRC for BS01018

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:10
Well:18
Vector:pDNR-Dual
Associated Gene/Transcriptbun-RC
Protein status:BS01018.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01018.3prime Sequence

602 bp (601 high quality bases) assembled on 2005-11-30

> BS01018.3prime
ATGGTCTAGAAAGCTTCGTTAGGACATGGGACCATTGGCTGTGACTACCG
ATGCTGCTGCTGCCGCTGCTGATGTCACCTGCTGCACCTGCTGCTCCACC
GATACCGCTGCTGACTCGACTGCACTGCTGCCGTTCTCGGCGCTGCCGTT
GGGAATGCTCGTGGGTACCACCGCGGACGCTGGACTGGTGGCCACACCCG
TTACCGCTACCGCTCCAGCGGCCTGCTGCTGAACTGCCTGACCCGCGGCA
GCTGGAGCAACGACACTTTGTACCGCCGGTGCCGCTTGAATGGCGGGCGT
GGCCGGCGGTGCGGCGAGTTGTAGCTGCAACTGCAGCTGCTGCAGTGTCT
CCTGCGGGATGTTCGACTTGAGAATGCTGTTCTCGAGCTCCAGCTTGTTG
ATCTTGTCCATCAGCTCGGAGATGCGCTCTTTTAGCACTTCCACCTCCTC
GCGCACCGCTATCATGAGATGCGACTTGACCAGATCTTTTGCATTAGGCA
CCATCACATAGCAGGGGCTGTCGTAGCCCTTCTGCCAAATCTCGTATAGC
CAATTCTCTGGCTGGCGCAGCGACATAGTGCCCATCATGTCGACTGATAA
CT

BS01018.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:43:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG5461-PC 570 bun-RC 1..570 588..19 2850 100 Minus
CG5461-PD 681 bun-RD 214..681 486..19 2340 100 Minus
CG5461-PE 765 bun-RE 298..765 486..19 2340 100 Minus
CG5461-PF 3294 bun-RF 2827..3294 486..19 2340 100 Minus
CG5461-PA 3621 bun-RA 3154..3621 486..19 2340 100 Minus
CG5461-PB 660 bun-RB 193..660 486..19 2340 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:35:32
Subject Length Description Subject Range Query Range Score Percent Strand
bun-RP 5139 CG42281-RP 3391..3960 588..19 2850 100 Minus
bun-RC 1754 CG5461-RC 567..1136 588..19 2850 100 Minus
bun-RO 3490 CG42281-RO 807..1274 486..19 2340 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:35:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12457756..12458223 19..486 2340 100 Plus
2L 23513712 2L 12460588..12460690 486..588 515 100 Plus
Blast to na_te.dros performed on 2015-02-10 19:35:32 has no hits.

BS01018.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:58:22 Download gff for BS01018.3prime
Subject Subject Range Query Range Percent Splice Strand
bun-PC 1..570 19..588 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:04:38 Download gff for BS01018.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5461-PC 1..570 19..588 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:25:59 Download gff for BS01018.3prime
Subject Subject Range Query Range Percent Splice Strand
bun-RC 559..1142 11..595 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:43:13 Download gff for BS01018.3prime
Subject Subject Range Query Range Percent Splice Strand
bun-RC 559..1142 11..595 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:43:13 Download gff for BS01018.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 12457750..12458223 11..486 99 <- Plus
2L 12460589..12460698 487..595 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:25:59 Download gff for BS01018.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12457750..12458223 11..486 99 <- Plus
arm_2L 12460589..12460698 487..595 96   Plus

BS01018.5prime Sequence

602 bp (601 high quality bases) assembled on 2005-11-30

> BS01018.5prime
GAAGTTATCAGTCGACATGATGGGCACTATGTCGCTGCGCCAGCCAGAGA
ATTGGCTATACGAGATTTGGCAGAAGGGCTACGACAGCCCCTGCTATGTG
ATGGTGCCTAATGCAAAAGATCTGGTCAAGTCGCATCTCATGATAGCGGT
GCGCGAGGAGGTGGAAGTGCTAAAAGAGCGCATCTCCGAGCTGATGGACA
AGATCAACAAGCTGGAGCTCGAGAACAGCATTCTCAAGTCGAACATCCCG
CAGGAGACACTGCAGCAGCTGCAGTTGCAGCTACAACTCGCCGCACCGCC
GGCCACGCCCGCCATTCAAGCGGCACCGGCGGTACAAAGTGTCGTTGCTC
CAGCTGCCGCGGGTCAGGCAGTTCAGCAGCAGGCCGCTGGAGCGGTAGCG
GTAACGGGTGTGGCCACCAGTCCAGCGTCCGCGGTGGTACCCACGAGCAT
TCCCAACGGCAGCGCCGAGAACGGCAGCAGTGCAGTCGAGTCAGCAGCGG
TATCGGTGGAGCAGCAGGTGCAGCAGGTGACATCAGCAGCGGCAGCAGCA
GCATCGGTAGTCACAGCCAATGGTCCCATGTCCTAACGAAGCTTTCTAGA
CC

BS01018.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:43:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG5461-PC 570 bun-RC 1..570 17..586 2850 100 Plus
CG5461-PD 681 bun-RD 214..681 119..586 2340 100 Plus
CG5461-PE 765 bun-RE 298..765 119..586 2340 100 Plus
CG5461-PF 3294 bun-RF 2827..3294 119..586 2340 100 Plus
CG5461-PA 3621 bun-RA 3154..3621 119..586 2340 100 Plus
CG5461-PB 660 bun-RB 193..660 119..586 2340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:41:45
Subject Length Description Subject Range Query Range Score Percent Strand
bun-RP 5139 CG42281-RP 3391..3960 17..586 2850 100 Plus
bun-RC 1754 CG5461-RC 567..1136 17..586 2850 100 Plus
bun-RO 3490 CG42281-RO 807..1274 119..586 2340 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:41:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12457756..12458223 586..119 2340 100 Minus
2L 23513712 2L 12460588..12460690 119..17 515 100 Minus
Blast to na_te.dros performed on 2015-02-11 11:41:43 has no hits.

BS01018.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:58:23 Download gff for BS01018.5prime
Subject Subject Range Query Range Percent Splice Strand
bun-PC 1..570 17..586 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:04:39 Download gff for BS01018.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5461-PC 1..570 17..586 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:19:14 Download gff for BS01018.5prime
Subject Subject Range Query Range Percent Splice Strand
bun-RC 559..1142 10..594 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:56:26 Download gff for BS01018.5prime
Subject Subject Range Query Range Percent Splice Strand
bun-RC 559..1142 10..594 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:56:26 Download gff for BS01018.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 12457750..12458223 119..594 99 <- Minus
2L 12460589..12460698 10..118 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:19:14 Download gff for BS01018.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12457750..12458223 119..594 99 <- Minus
arm_2L 12460589..12460698 10..118 96   Minus

BS01018.complete Sequence

604 bp (604 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634496

> BS01018.complete
GAAGTTATCAGTCGACATGATGGGCACTATGTCGCTGCGCCAGCCAGAGA
ATTGGCTATACGAGATTTGGCAGAAGGGCTACGACAGCCCCTGCTATGTG
ATGGTGCCTAATGCAAAAGATCTGGTCAAGTCGCATCTCATGATAGCGGT
GCGCGAGGAGGTGGAAGTGCTAAAAGAGCGCATCTCCGAGCTGATGGACA
AGATCAACAAGCTGGAGCTCGAGAACAGCATTCTCAAGTCGAACATCCCG
CAGGAGACACTGCAGCAGCTGCAGTTGCAGCTACAACTCGCCGCACCGCC
GGCCACGCCCGCCATTCAAGCGGCACCGGCGGTACAAAGTGTCGTTGCTC
CAGCTGCCGCGGGTCAGGCAGTTCAGCAGCAGGCCGCTGGAGCGGTAGCG
GTAACGGGTGTGGCCACCAGTCCAGCGTCCGCGGTGGTACCCACGAGCAT
TCCCAACGGCAGCGCCGAGAACGGCAGCAGTGCAGTCGAGTCAGCAGCGG
TATCGGTGGAGCAGCAGGTGCAGCAGGTGACATCAGCAGCGGCAGCAGCA
GCATCGGTAGTCACAGCCAATGGTCCCATGTCCTAACGAAGCTTTCTAGA
CCAT

BS01018.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:21:13
Subject Length Description Subject Range Query Range Score Percent Strand
bun-RP 3414 CG42281-PP 2845..3414 17..586 2850 100 Plus
bun-RC 570 CG42281-PC 1..570 17..586 2850 100 Plus
bun-RO 579 CG42281-PO 112..579 119..586 2340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:21:15
Subject Length Description Subject Range Query Range Score Percent Strand
bun-RP 5139 CG42281-RP 3391..3960 17..586 2850 100 Plus
bun-RC 1754 CG5461-RC 567..1136 17..586 2850 100 Plus
bun-RO 3490 CG42281-RO 807..1274 119..586 2340 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:21:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12457756..12458223 586..119 2340 100 Minus
2L 23513712 2L 12460588..12460690 119..17 515 100 Minus
Blast to na_te.dros performed on 2014-11-26 22:21:13 has no hits.

BS01018.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:39 Download gff for BS01018.complete
Subject Subject Range Query Range Percent Splice Strand
bun-RI 1..570 17..586 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:22:00 Download gff for BS01018.complete
Subject Subject Range Query Range Percent Splice Strand
bun-RI 540..1123 10..594 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:55:10 Download gff for BS01018.complete
Subject Subject Range Query Range Percent Splice Strand
bun-RC 567..1136 17..588 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:39 Download gff for BS01018.complete
Subject Subject Range Query Range Percent Splice Strand
bun-RI 540..1123 10..594 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:58:27 Download gff for BS01018.complete
Subject Subject Range Query Range Percent Splice Strand
bun-RC 567..1136 17..588 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:58:27 Download gff for BS01018.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12457752..12458223 119..588 99 <- Minus
2L 12460589..12460690 17..118 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:55:10 Download gff for BS01018.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12457752..12458223 119..588 99 <- Minus
arm_2L 12460589..12460690 17..118 100   Minus

BS01018.pep Sequence

Translation from 16 to 585

> BS01018.pep
MMGTMSLRQPENWLYEIWQKGYDSPCYVMVPNAKDLVKSHLMIAVREEVE
VLKERISELMDKINKLELENSILKSNIPQETLQQLQLQLQLAAPPATPAI
QAAPAVQSVVAPAAAGQAVQQQAAGAVAVTGVATSPASAVVPTSIPNGSA
ENGSSAVESAAVSVEQQVQQVTSAAAAAASVVTANGPMS*

BS01018.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:42:45
Subject Length Description Subject Range Query Range Score Percent Strand
bun-PC 189 CG5461-PC 1..189 1..189 921 100 Plus
bun-PP 1137 CG42281-PP 949..1137 1..189 921 100 Plus
bun-PO 192 CG42281-PO 33..192 30..189 731 97.5 Plus
bun-PB 219 CG5461-PB 60..219 30..189 731 97.5 Plus
bun-PH 226 CG42281-PN 67..226 30..189 731 97.5 Plus