Clone Sequence Records
BS01020.3prime Sequence
614 bp (613 high quality bases) assembled on 2005-11-30
> BS01020.3prime
ATGGTCTAGAAAGCTTCGCTAACTTATCAGGGACATCCCACCTGAATCCG
TCTCCGAACTCGATGGACGGGGGCTGATGTTGGTGTGGGACATCTGTGGA
CTGGCCTGCAGCAGGTTGTCGCCGTAAGATCCCGGCACCGGAACAGAAAC
GGGCAGCGTGTAGCTGCTGTTTGGAAGCTGGCGAGGGGCACCCGCACCGC
CGATGGCCATCTGGTTGCGCTGCATCATGTTCTGGAACTCCTCGTCGATC
TTGTTGTACTTGGCCTCCGTTCGCGGAGTGAGTGTGTAGTCCGTTTCGGC
TTCGGGCGAGTCCGGCGACATCACGCCGTTCTTGTTCTCCTTCTCGATGA
TGTTCTTGTTGGTGAGGGACTCGTGGGGCTCGTTGTACTCGGTGTACTTG
AGCAGGACGCGATCCATGTCGGTGCTGGCGTACTGGTACAGCTTGTTGCT
CGACGAGAAGATGATCAGGGCGATCTCGCAGTCGCAGAGCACGGACAGCT
CGTAGGCCTTCTTCATCACGCCGAACTTGCGCTTGTTGAAGGTCACCTGC
CGATTGCGTTCATCGGTGATGCGTGATATTTGAATTTTTTTGCGGCCCAT
GTCGACTGATAACT
BS01020.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:43:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1429-PE | 582 | Mef2-RE | 1..582 | 600..19 | 2910 | 100 | Minus |
CG1429-PD | 1623 | Mef2-RD | 1..577 | 600..24 | 2885 | 100 | Minus |
CG1429-PC | 1548 | Mef2-RC | 1..577 | 600..24 | 2885 | 100 | Minus |
CG1429-PB | 1530 | Mef2-RB | 1..559 | 600..42 | 2795 | 100 | Minus |
CG1429-PF | 1506 | Mef2-RF | 1..559 | 600..42 | 2795 | 100 | Minus |
CG1429-PA | 1551 | Mef2-RA | 1..559 | 600..42 | 2795 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:35:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mef2-RC | 5854 | CG1429-RC | 1056..1637 | 601..20 | 2895 | 99.8 | Minus |
Mef2-RD | 3690 | CG1429-RD | 1439..2020 | 601..20 | 2895 | 99.8 | Minus |
Mef2-RG | 5240 | CG1429-RG | 2460..3037 | 601..24 | 2890 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:35:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9919424..9919749 | 19..344 | 1630 | 100 | Plus |
2R | 25286936 | 2R | 9920519..9920725 | 343..549 | 1035 | 100 | Plus |
2R | 25286936 | 2R | 9921606..9921664 | 543..601 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 19:35:17 has no hits.
BS01020.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:58:24 Download gff for
BS01020.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mef2-PE | 1..582 | 19..600 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:04:41 Download gff for
BS01020.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1429-PE | 1..582 | 19..600 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:25:46 Download gff for
BS01020.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mef2-RD | 1430..2020 | 20..610 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:43:01 Download gff for
BS01020.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mef2-RD | 1430..2020 | 20..610 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:43:01 Download gff for
BS01020.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9920519..9920722 | 343..546 | 100 | <- | Plus |
2R | 9921610..9921673 | 547..610 | 95 | | Plus |
2R | 9919424..9919747 | 19..342 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:25:46 Download gff for
BS01020.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5806929..5807252 | 19..342 | 100 | <- | Plus |
arm_2R | 5808024..5808227 | 343..546 | 100 | <- | Plus |
arm_2R | 5809115..5809178 | 547..610 | 95 | | Plus |
BS01020.5prime Sequence
614 bp (613 high quality bases) assembled on 2005-11-30
> BS01020.5prime
GAAGTTATCAGTCGACATGGGCCGCAAAAAAATTCAAATATCACGCATCA
CCGATGAACGCAATCGGCAGGTGACCTTCAACAAGCGCAAGTTCGGCGTG
ATGAAGAAGGCCTACGAGCTGTCCGTGCTCTGCGACTGCGAGATCGCCCT
GATCATCTTCTCGTCGAGCAACAAGCTGTACCAGTACGCCAGCACCGACA
TGGATCGCGTCCTGCTCAAGTACACCGAGTACAACGAGCCCCACGAGTCC
CTCACCAACAAGAACATCATCGAGAAGGAGAACAAGAACGGCGTGATGTC
GCCGGACTCGCCCGAAGCCGAAACGGACTACACACTCACTCCGCGAACGG
AGGCCAAGTACAACAAGATCGACGAGGAGTTCCAGAACATGATGCAGCGC
AACCAGATGGCCATCGGCGGTGCGGGTGCCCCTCGCCAGCTTCCAAACAG
CAGCTACACGCTGCCCGTTTCTGTTCCGGTGCCGGGATCTTACGGCGACA
ACCTGCTGCAGGCCAGTCCACAGATGTCCCACACCAACATCAGCCCCCGT
CCATCGAGTTCGGAGACGGATTCAGGTGGGATGTCCCTGATAAGTTAGCG
AAGCTTTCTAGACC
BS01020.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:43:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1429-PE | 582 | Mef2-RE | 1..582 | 17..598 | 2910 | 100 | Plus |
CG1429-PD | 1623 | Mef2-RD | 1..577 | 17..593 | 2885 | 100 | Plus |
CG1429-PC | 1548 | Mef2-RC | 1..577 | 17..593 | 2885 | 100 | Plus |
CG1429-PB | 1530 | Mef2-RB | 1..559 | 17..575 | 2795 | 100 | Plus |
CG1429-PF | 1506 | Mef2-RF | 1..559 | 17..575 | 2795 | 100 | Plus |
CG1429-PA | 1551 | Mef2-RA | 1..559 | 17..575 | 2795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:29:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mef2-RC | 5854 | CG1429-RC | 1056..1637 | 16..597 | 2895 | 99.8 | Plus |
Mef2-RD | 3690 | CG1429-RD | 1439..2020 | 16..597 | 2895 | 99.8 | Plus |
Mef2-RG | 5240 | CG1429-RG | 2460..3037 | 16..593 | 2890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:29:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9919424..9919749 | 598..273 | 1630 | 100 | Minus |
2R | 25286936 | 2R | 9920519..9920725 | 274..68 | 1035 | 100 | Minus |
2R | 25286936 | 2R | 9921606..9921664 | 74..16 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:29:05 has no hits.
BS01020.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:58:25 Download gff for
BS01020.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mef2-PE | 1..582 | 17..598 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:04:43 Download gff for
BS01020.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1429-PE | 1..582 | 17..598 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:26:25 Download gff for
BS01020.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mef2-RD | 1430..2020 | 7..597 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:32:16 Download gff for
BS01020.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mef2-RD | 1430..2020 | 7..597 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:32:16 Download gff for
BS01020.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9919424..9919747 | 275..598 | 100 | <- | Minus |
2R | 9920519..9920722 | 71..274 | 100 | <- | Minus |
2R | 9921610..9921673 | 7..70 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:26:25 Download gff for
BS01020.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5806929..5807252 | 275..598 | 100 | <- | Minus |
arm_2R | 5808024..5808227 | 71..274 | 100 | <- | Minus |
arm_2R | 5809115..5809178 | 7..70 | 95 | | Minus |
BS01020.complete Sequence
616 bp (616 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634497
> BS01020.complete
GAAGTTATCAGTCGACATGGGCCGCAAAAAAATTCAAATATCACGCATCA
CCGATGAACGCAATCGGCAGGTGACCTTCAACAAGCGCAAGTTCGGCGTG
ATGAAGAAGGCCTACGAGCTGTCCGTGCTCTGCGACTGCGAGATCGCCCT
GATCATCTTCTCGTCGAGCAACAAGCTGTACCAGTACGCCAGCACCGACA
TGGATCGCGTCCTGCTCAAGTACACCGAGTACAACGAGCCCCACGAGTCC
CTCACCAACAAGAACATCATCGAGAAGGAGAACAAGAACGGCGTGATGTC
GCCGGACTCGCCCGAAGCCGAAACGGACTACACACTCACTCCGCGAACGG
AGGCCAAGTACAACAAGATCGACGAGGAGTTCCAGAACATGATGCAGCGC
AACCAGATGGCCATCGGCGGTGCGGGTGCCCCTCGCCAGCTTCCAAACAG
CAGCTACACGCTGCCCGTTTCTGTTCCGGTGCCGGGATCTTACGGCGACA
ACCTGCTGCAGGCCAGTCCACAGATGTCCCACACCAACATCAGCCCCCGT
CCATCGAGTTCGGAGACGGATTCAGGTGGGATGTCCCTGATAAGTTAGCG
AAGCTTTCTAGACCAT
BS01020.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:48:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mef2-RC | 1548 | CG1429-PC | 1..581 | 17..597 | 2890 | 99.8 | Plus |
Mef2-RD | 1623 | CG1429-PD | 1..581 | 17..597 | 2890 | 99.8 | Plus |
Mef2-RG | 1536 | CG1429-PG | 1..577 | 17..593 | 2885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:48:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mef2-RC | 5854 | CG1429-RC | 1056..1637 | 16..597 | 2895 | 99.8 | Plus |
Mef2-RD | 3690 | CG1429-RD | 1439..2020 | 16..597 | 2895 | 99.8 | Plus |
Mef2-RG | 5240 | CG1429-RG | 2460..3037 | 16..593 | 2890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:48:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9919424..9919749 | 598..273 | 1630 | 100 | Minus |
2R | 25286936 | 2R | 9920519..9920725 | 274..68 | 1035 | 100 | Minus |
2R | 25286936 | 2R | 9921606..9921664 | 74..16 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:48:31 has no hits.
BS01020.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:40 Download gff for
BS01020.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mef2-RE | 1..582 | 17..598 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:22:02 Download gff for
BS01020.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mef2-RE | 1016..1607 | 7..598 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:31:55 Download gff for
BS01020.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mef2-RD | 1440..2022 | 17..600 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:41 Download gff for
BS01020.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mef2-RE | 1016..1607 | 7..598 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:38:21 Download gff for
BS01020.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mef2-RD | 1440..2022 | 17..600 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:38:21 Download gff for
BS01020.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9919422..9919747 | 275..600 | 99 | <- | Minus |
2R | 9920519..9920722 | 71..274 | 100 | <- | Minus |
2R | 9921610..9921663 | 17..70 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:31:55 Download gff for
BS01020.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5806927..5807252 | 275..600 | 99 | <- | Minus |
arm_2R | 5808024..5808227 | 71..274 | 100 | <- | Minus |
arm_2R | 5809115..5809168 | 17..70 | 100 | | Minus |
BS01020.pep Sequence
Translation from 16 to 597
> BS01020.pep
MGRKKIQISRITDERNRQVTFNKRKFGVMKKAYELSVLCDCEIALIIFSS
SNKLYQYASTDMDRVLLKYTEYNEPHESLTNKNIIEKENKNGVMSPDSPE
AETDYTLTPRTEAKYNKIDEEFQNMMQRNQMAIGGAGAPRQLPNSSYTLP
VSVPVPGSYGDNLLQASPQMSHTNISPRPSSSETDSGGMSLIS*
BS01020.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:32:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mef2-PG | 511 | CG1429-PG | 1..193 | 1..193 | 991 | 99.5 | Plus |
Mef2-PC | 515 | CG1429-PC | 1..192 | 1..192 | 990 | 100 | Plus |
Mef2-PD | 540 | CG1429-PD | 1..192 | 1..192 | 990 | 100 | Plus |
Mef2-PF | 501 | CG1429-PF | 1..186 | 1..186 | 961 | 100 | Plus |
Mef2-PB | 509 | CG1429-PB | 1..186 | 1..186 | 961 | 100 | Plus |