Clone BS01020 Report

Search the DGRC for BS01020

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:10
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptMef2-RE
Protein status:BS01020.pep:
Sequenced Size:16

Clone Sequence Records

BS01020.3prime Sequence

614 bp (613 high quality bases) assembled on 2005-11-30

> BS01020.3prime
ATGGTCTAGAAAGCTTCGCTAACTTATCAGGGACATCCCACCTGAATCCG
TCTCCGAACTCGATGGACGGGGGCTGATGTTGGTGTGGGACATCTGTGGA
CTGGCCTGCAGCAGGTTGTCGCCGTAAGATCCCGGCACCGGAACAGAAAC
GGGCAGCGTGTAGCTGCTGTTTGGAAGCTGGCGAGGGGCACCCGCACCGC
CGATGGCCATCTGGTTGCGCTGCATCATGTTCTGGAACTCCTCGTCGATC
TTGTTGTACTTGGCCTCCGTTCGCGGAGTGAGTGTGTAGTCCGTTTCGGC
TTCGGGCGAGTCCGGCGACATCACGCCGTTCTTGTTCTCCTTCTCGATGA
TGTTCTTGTTGGTGAGGGACTCGTGGGGCTCGTTGTACTCGGTGTACTTG
AGCAGGACGCGATCCATGTCGGTGCTGGCGTACTGGTACAGCTTGTTGCT
CGACGAGAAGATGATCAGGGCGATCTCGCAGTCGCAGAGCACGGACAGCT
CGTAGGCCTTCTTCATCACGCCGAACTTGCGCTTGTTGAAGGTCACCTGC
CGATTGCGTTCATCGGTGATGCGTGATATTTGAATTTTTTTGCGGCCCAT
GTCGACTGATAACT

BS01020.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:43:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG1429-PE 582 Mef2-RE 1..582 600..19 2910 100 Minus
CG1429-PD 1623 Mef2-RD 1..577 600..24 2885 100 Minus
CG1429-PC 1548 Mef2-RC 1..577 600..24 2885 100 Minus
CG1429-PB 1530 Mef2-RB 1..559 600..42 2795 100 Minus
CG1429-PF 1506 Mef2-RF 1..559 600..42 2795 100 Minus
CG1429-PA 1551 Mef2-RA 1..559 600..42 2795 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:35:18
Subject Length Description Subject Range Query Range Score Percent Strand
Mef2-RC 5854 CG1429-RC 1056..1637 601..20 2895 99.8 Minus
Mef2-RD 3690 CG1429-RD 1439..2020 601..20 2895 99.8 Minus
Mef2-RG 5240 CG1429-RG 2460..3037 601..24 2890 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:35:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9919424..9919749 19..344 1630 100 Plus
2R 25286936 2R 9920519..9920725 343..549 1035 100 Plus
2R 25286936 2R 9921606..9921664 543..601 295 100 Plus
Blast to na_te.dros performed on 2015-02-10 19:35:17 has no hits.

BS01020.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:58:24 Download gff for BS01020.3prime
Subject Subject Range Query Range Percent Splice Strand
Mef2-PE 1..582 19..600 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:04:41 Download gff for BS01020.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1429-PE 1..582 19..600 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:25:46 Download gff for BS01020.3prime
Subject Subject Range Query Range Percent Splice Strand
Mef2-RD 1430..2020 20..610 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:43:01 Download gff for BS01020.3prime
Subject Subject Range Query Range Percent Splice Strand
Mef2-RD 1430..2020 20..610 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:43:01 Download gff for BS01020.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9920519..9920722 343..546 100 <- Plus
2R 9921610..9921673 547..610 95   Plus
2R 9919424..9919747 19..342 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:25:46 Download gff for BS01020.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5806929..5807252 19..342 100 <- Plus
arm_2R 5808024..5808227 343..546 100 <- Plus
arm_2R 5809115..5809178 547..610 95   Plus

BS01020.5prime Sequence

614 bp (613 high quality bases) assembled on 2005-11-30

> BS01020.5prime
GAAGTTATCAGTCGACATGGGCCGCAAAAAAATTCAAATATCACGCATCA
CCGATGAACGCAATCGGCAGGTGACCTTCAACAAGCGCAAGTTCGGCGTG
ATGAAGAAGGCCTACGAGCTGTCCGTGCTCTGCGACTGCGAGATCGCCCT
GATCATCTTCTCGTCGAGCAACAAGCTGTACCAGTACGCCAGCACCGACA
TGGATCGCGTCCTGCTCAAGTACACCGAGTACAACGAGCCCCACGAGTCC
CTCACCAACAAGAACATCATCGAGAAGGAGAACAAGAACGGCGTGATGTC
GCCGGACTCGCCCGAAGCCGAAACGGACTACACACTCACTCCGCGAACGG
AGGCCAAGTACAACAAGATCGACGAGGAGTTCCAGAACATGATGCAGCGC
AACCAGATGGCCATCGGCGGTGCGGGTGCCCCTCGCCAGCTTCCAAACAG
CAGCTACACGCTGCCCGTTTCTGTTCCGGTGCCGGGATCTTACGGCGACA
ACCTGCTGCAGGCCAGTCCACAGATGTCCCACACCAACATCAGCCCCCGT
CCATCGAGTTCGGAGACGGATTCAGGTGGGATGTCCCTGATAAGTTAGCG
AAGCTTTCTAGACC

BS01020.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:43:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG1429-PE 582 Mef2-RE 1..582 17..598 2910 100 Plus
CG1429-PD 1623 Mef2-RD 1..577 17..593 2885 100 Plus
CG1429-PC 1548 Mef2-RC 1..577 17..593 2885 100 Plus
CG1429-PB 1530 Mef2-RB 1..559 17..575 2795 100 Plus
CG1429-PF 1506 Mef2-RF 1..559 17..575 2795 100 Plus
CG1429-PA 1551 Mef2-RA 1..559 17..575 2795 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:29:06
Subject Length Description Subject Range Query Range Score Percent Strand
Mef2-RC 5854 CG1429-RC 1056..1637 16..597 2895 99.8 Plus
Mef2-RD 3690 CG1429-RD 1439..2020 16..597 2895 99.8 Plus
Mef2-RG 5240 CG1429-RG 2460..3037 16..593 2890 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:29:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9919424..9919749 598..273 1630 100 Minus
2R 25286936 2R 9920519..9920725 274..68 1035 100 Minus
2R 25286936 2R 9921606..9921664 74..16 295 100 Minus
Blast to na_te.dros performed on 2015-02-11 15:29:05 has no hits.

BS01020.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:58:25 Download gff for BS01020.5prime
Subject Subject Range Query Range Percent Splice Strand
Mef2-PE 1..582 17..598 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:04:43 Download gff for BS01020.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1429-PE 1..582 17..598 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:26:25 Download gff for BS01020.5prime
Subject Subject Range Query Range Percent Splice Strand
Mef2-RD 1430..2020 7..597 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:32:16 Download gff for BS01020.5prime
Subject Subject Range Query Range Percent Splice Strand
Mef2-RD 1430..2020 7..597 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:32:16 Download gff for BS01020.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9919424..9919747 275..598 100 <- Minus
2R 9920519..9920722 71..274 100 <- Minus
2R 9921610..9921673 7..70 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:26:25 Download gff for BS01020.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5806929..5807252 275..598 100 <- Minus
arm_2R 5808024..5808227 71..274 100 <- Minus
arm_2R 5809115..5809178 7..70 95   Minus

BS01020.complete Sequence

616 bp (616 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634497

> BS01020.complete
GAAGTTATCAGTCGACATGGGCCGCAAAAAAATTCAAATATCACGCATCA
CCGATGAACGCAATCGGCAGGTGACCTTCAACAAGCGCAAGTTCGGCGTG
ATGAAGAAGGCCTACGAGCTGTCCGTGCTCTGCGACTGCGAGATCGCCCT
GATCATCTTCTCGTCGAGCAACAAGCTGTACCAGTACGCCAGCACCGACA
TGGATCGCGTCCTGCTCAAGTACACCGAGTACAACGAGCCCCACGAGTCC
CTCACCAACAAGAACATCATCGAGAAGGAGAACAAGAACGGCGTGATGTC
GCCGGACTCGCCCGAAGCCGAAACGGACTACACACTCACTCCGCGAACGG
AGGCCAAGTACAACAAGATCGACGAGGAGTTCCAGAACATGATGCAGCGC
AACCAGATGGCCATCGGCGGTGCGGGTGCCCCTCGCCAGCTTCCAAACAG
CAGCTACACGCTGCCCGTTTCTGTTCCGGTGCCGGGATCTTACGGCGACA
ACCTGCTGCAGGCCAGTCCACAGATGTCCCACACCAACATCAGCCCCCGT
CCATCGAGTTCGGAGACGGATTCAGGTGGGATGTCCCTGATAAGTTAGCG
AAGCTTTCTAGACCAT

BS01020.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:48:33
Subject Length Description Subject Range Query Range Score Percent Strand
Mef2-RC 1548 CG1429-PC 1..581 17..597 2890 99.8 Plus
Mef2-RD 1623 CG1429-PD 1..581 17..597 2890 99.8 Plus
Mef2-RG 1536 CG1429-PG 1..577 17..593 2885 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:48:35
Subject Length Description Subject Range Query Range Score Percent Strand
Mef2-RC 5854 CG1429-RC 1056..1637 16..597 2895 99.8 Plus
Mef2-RD 3690 CG1429-RD 1439..2020 16..597 2895 99.8 Plus
Mef2-RG 5240 CG1429-RG 2460..3037 16..593 2890 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:48:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9919424..9919749 598..273 1630 100 Minus
2R 25286936 2R 9920519..9920725 274..68 1035 100 Minus
2R 25286936 2R 9921606..9921664 74..16 295 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:48:31 has no hits.

BS01020.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:40 Download gff for BS01020.complete
Subject Subject Range Query Range Percent Splice Strand
Mef2-RE 1..582 17..598 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:22:02 Download gff for BS01020.complete
Subject Subject Range Query Range Percent Splice Strand
Mef2-RE 1016..1607 7..598 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:31:55 Download gff for BS01020.complete
Subject Subject Range Query Range Percent Splice Strand
Mef2-RD 1440..2022 17..600 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:41 Download gff for BS01020.complete
Subject Subject Range Query Range Percent Splice Strand
Mef2-RE 1016..1607 7..598 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:38:21 Download gff for BS01020.complete
Subject Subject Range Query Range Percent Splice Strand
Mef2-RD 1440..2022 17..600 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:38:21 Download gff for BS01020.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9919422..9919747 275..600 99 <- Minus
2R 9920519..9920722 71..274 100 <- Minus
2R 9921610..9921663 17..70 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:31:55 Download gff for BS01020.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5806927..5807252 275..600 99 <- Minus
arm_2R 5808024..5808227 71..274 100 <- Minus
arm_2R 5809115..5809168 17..70 100   Minus

BS01020.pep Sequence

Translation from 16 to 597

> BS01020.pep
MGRKKIQISRITDERNRQVTFNKRKFGVMKKAYELSVLCDCEIALIIFSS
SNKLYQYASTDMDRVLLKYTEYNEPHESLTNKNIIEKENKNGVMSPDSPE
AETDYTLTPRTEAKYNKIDEEFQNMMQRNQMAIGGAGAPRQLPNSSYTLP
VSVPVPGSYGDNLLQASPQMSHTNISPRPSSSETDSGGMSLIS*

BS01020.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:32:01
Subject Length Description Subject Range Query Range Score Percent Strand
Mef2-PG 511 CG1429-PG 1..193 1..193 991 99.5 Plus
Mef2-PC 515 CG1429-PC 1..192 1..192 990 100 Plus
Mef2-PD 540 CG1429-PD 1..192 1..192 990 100 Plus
Mef2-PF 501 CG1429-PF 1..186 1..186 961 100 Plus
Mef2-PB 509 CG1429-PB 1..186 1..186 961 100 Plus