Clone BS01022 Report

Search the DGRC for BS01022

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:10
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptE(spl)mbeta-HLH-RA
Protein status:BS01022.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01022.3prime Sequence

620 bp (619 high quality bases) assembled on 2005-11-30

> BS01022.3prime
ATGGTCTAGAAAGCTTCGTCACCAGGGACGCCACATGGGGCCAGAGGTGG
AGCTGGCCTCGCTGGGCGCCGGGCTGCAGGCTCCGCTCTCCAAGCTGTCG
CATTCCGAGGGAGGTGGAGTGACCATAGCTTGATCCTCTACTGGAGCTTG
AAGAGGCACTCCAATGGGCAGCGAGGGAACCACCACTTGCAGGTAGTTGA
GACGATGGCCAAGGTGACTCATCAGCTGGGTGCCGAGATCCACACTCACT
CCGGGTACAGCGGCCAAGGTTTTGGACACTTCATTGGCAGCATGAACGTA
GCCAGCACGGAAACTCTCAGCGATGCTAAGCTTGGGATCGGCACTCGGAG
ACACTCCACCGGTGACGCTGGACAGACGCAGCTGCTTCTGGGCACGCAGC
TTCTTCATGTGCTCCACGGTCAGCTCCAGGATGTCGGCCTTCTCCAGCCG
GGTGATGTGCTCGCCCTCCTGGGTCAGGCACTCCACCATGATGTCCTTGA
GCTCGTCCAGGCACTTGTTAATCCTGGCACGGCGCTTACGCTCCAGCATG
GGCTTCATCACCTTGCGGTACTGATAGGTCTTGGACATCTCCATTTCCAG
AACCATGTCGACTGATAACT

BS01022.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:43:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG14548-PA 588 HLHmbeta-RA 1..588 606..19 2940 100 Minus
CG8361-PA 561 HLHm7-RA 16..113 591..494 340 93.8 Minus
CG8333-PA 618 HLHmgamma-RA 22..119 591..494 340 93.8 Minus
CG8346-PA 675 HLHm3-RA 7..107 594..494 255 90 Minus
CG8346-PA 675 HLHm3-RA 130..196 471..405 210 92.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:20:01
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)mbeta-HLH-RA 978 CG14548-RA 131..718 606..19 2940 100 Minus
E(spl)m3-HLH-RA 1305 CG8346-RA 204..397 594..401 640 88.7 Minus
E(spl)mgamma-HLH-RA 911 CG8333-RA 114..289 591..416 460 84.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:19:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26005306..26005893 19..606 2940 100 Plus
3R 32079331 3R 26022026..26022219 594..401 640 88.7 Minus
3R 32079331 3R 25999964..26000139 591..416 460 84.1 Minus
3R 32079331 3R 26037178..26037291 591..478 405 90.4 Minus
3R 32079331 3R 26040357..26040416 564..505 180 86.7 Minus
Blast to na_te.dros performed on 2015-02-10 23:19:59 has no hits.

BS01022.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:58:28 Download gff for BS01022.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14548-PA 1..588 19..606 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:04:47 Download gff for BS01022.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14548-PA 1..588 19..606 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:40:19 Download gff for BS01022.3prime
Subject Subject Range Query Range Percent Splice Strand
E(spl)mbeta-HLH-RA 124..724 12..614 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:36:31 Download gff for BS01022.3prime
Subject Subject Range Query Range Percent Splice Strand
E(spl)mbeta-HLH-RA 124..724 12..614 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:36:31 Download gff for BS01022.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 26005300..26005900 12..614 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:40:19 Download gff for BS01022.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21831022..21831622 12..614 98   Plus

BS01022.5prime Sequence

620 bp (619 high quality bases) assembled on 2005-11-30

> BS01022.5prime
GAAGTTATCAGTCGACATGGTTCTGGAAATGGAGATGTCCAAGACCTATC
AGTACCGCAAGGTGATGAAGCCCATGCTGGAGCGTAAGCGCCGTGCCAGG
ATTAACAAGTGCCTGGACGAGCTCAAGGACATCATGGTGGAGTGCCTGAC
CCAGGAGGGCGAGCACATCACCCGGCTGGAGAAGGCCGACATCCTGGAGC
TGACCGTGGAGCACATGAAGAAGCTGCGTGCCCAGAAGCAGCTGCGTCTG
TCCAGCGTCACCGGTGGAGTGTCTCCGAGTGCCGATCCCAAGCTTAGCAT
CGCTGAGAGTTTCCGTGCTGGCTACGTTCATGCTGCCAATGAAGTGTCCA
AAACCTTGGCCGCTGTACCCGGAGTGAGTGTGGATCTCGGCACCCAGCTG
ATGAGTCACCTTGGCCATCGTCTCAACTACCTGCAAGTGGTGGTTCCCTC
GCTGCCCATTGGAGTGCCTCTTCAAGCTCCAGTAGAGGATCAAGCTATGG
TCACTCCACCTCCCTCGGAATGCGACAGCTTGGAGAGCGGAGCCTGCAGC
CCGGCGCCCAGCGAGGCCAGCTCCACCTCTGGCCCCATGTGGCGTCCCTG
GTGACGAAGCTTTCTAGACC

BS01022.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:43:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG14548-PA 588 HLHmbeta-RA 1..588 17..604 2940 100 Plus
CG8361-PA 561 HLHm7-RA 16..113 32..129 340 93.8 Plus
CG8333-PA 618 HLHmgamma-RA 22..119 32..129 340 93.8 Plus
CG8346-PA 675 HLHm3-RA 7..107 29..129 255 90 Plus
CG8346-PA 675 HLHm3-RA 130..196 152..218 210 92.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:12:00
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)mbeta-HLH-RA 978 CG14548-RA 131..718 17..604 2940 100 Plus
E(spl)m3-HLH-RA 1305 CG8346-RA 204..397 29..222 640 88.7 Plus
E(spl)mgamma-HLH-RA 911 CG8333-RA 114..289 32..207 460 84.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:11:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26005306..26005893 604..17 2940 100 Minus
3R 32079331 3R 26022026..26022219 29..222 640 88.7 Plus
3R 32079331 3R 25999964..26000139 32..207 460 84.1 Plus
3R 32079331 3R 26037178..26037291 32..145 405 90.4 Plus
3R 32079331 3R 26040357..26040416 59..118 180 86.7 Plus
Blast to na_te.dros performed on 2015-02-11 10:11:57 has no hits.

BS01022.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:58:29 Download gff for BS01022.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14548-PA 1..588 17..604 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:04:48 Download gff for BS01022.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14548-PA 1..588 17..604 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:42:38 Download gff for BS01022.5prime
Subject Subject Range Query Range Percent Splice Strand
E(spl)mbeta-HLH-RA 124..724 9..611 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:18:04 Download gff for BS01022.5prime
Subject Subject Range Query Range Percent Splice Strand
E(spl)mbeta-HLH-RA 124..724 9..611 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:18:04 Download gff for BS01022.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 26005300..26005900 9..611 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:42:38 Download gff for BS01022.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21831022..21831622 9..611 98   Minus

BS01022.complete Sequence

622 bp (622 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634498

> BS01022.complete
GAAGTTATCAGTCGACATGGTTCTGGAAATGGAGATGTCCAAGACCTATC
AGTACCGCAAGGTGATGAAGCCCATGCTGGAGCGTAAGCGCCGTGCCAGG
ATTAACAAGTGCCTGGACGAGCTCAAGGACATCATGGTGGAGTGCCTGAC
CCAGGAGGGCGAGCACATCACCCGGCTGGAGAAGGCCGACATCCTGGAGC
TGACCGTGGAGCACATGAAGAAGCTGCGTGCCCAGAAGCAGCTGCGTCTG
TCCAGCGTCACCGGTGGAGTGTCTCCGAGTGCCGATCCCAAGCTTAGCAT
CGCTGAGAGTTTCCGTGCTGGCTACGTTCATGCTGCCAATGAAGTGTCCA
AAACCTTGGCCGCTGTACCCGGAGTGAGTGTGGATCTCGGCACCCAGCTG
ATGAGTCACCTTGGCCATCGTCTCAACTACCTGCAAGTGGTGGTTCCCTC
GCTGCCCATTGGAGTGCCTCTTCAAGCTCCAGTAGAGGATCAAGCTATGG
TCACTCCACCTCCCTCGGAATGCGACAGCTTGGAGAGCGGAGCCTGCAGC
CCGGCGCCCAGCGAGGCCAGCTCCACCTCTGGCCCCATGTGGCGTCCCTG
GTGACGAAGCTTTCTAGACCAT

BS01022.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:24:11
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)mbeta-HLH-RA 588 CG14548-PA 1..588 17..604 2940 100 Plus
E(spl)m3-HLH-RA 675 CG8346-PA 7..200 29..222 640 88.7 Plus
E(spl)mgamma-HLH-RA 618 CG8333-PA 22..197 32..207 460 84.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:24:12
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)mbeta-HLH-RA 978 CG14548-RA 131..718 17..604 2940 100 Plus
E(spl)m3-HLH-RA 1305 CG8346-RA 204..397 29..222 640 88.7 Plus
E(spl)mgamma-HLH-RA 911 CG8333-RA 114..289 32..207 460 84.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:24:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26005306..26005893 604..17 2940 100 Minus
3R 32079331 3R 26022026..26022219 29..222 640 88.7 Plus
3R 32079331 3R 25999964..26000139 32..207 460 84.1 Plus
3R 32079331 3R 26037178..26037291 32..145 405 90.4 Plus
3R 32079331 3R 26040357..26040416 59..118 180 86.7 Plus
Blast to na_te.dros performed on 2014-11-26 22:24:10 has no hits.

BS01022.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:43 Download gff for BS01022.complete
Subject Subject Range Query Range Percent Splice Strand
HLHmbeta-RA 1..588 17..604 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:22:03 Download gff for BS01022.complete
Subject Subject Range Query Range Percent Splice Strand
HLHmbeta-RA 124..724 9..611 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:56:50 Download gff for BS01022.complete
Subject Subject Range Query Range Percent Splice Strand
E(spl)mbeta-HLH-RA 131..718 17..606 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:44 Download gff for BS01022.complete
Subject Subject Range Query Range Percent Splice Strand
HLHmbeta-RA 124..724 9..611 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:59:53 Download gff for BS01022.complete
Subject Subject Range Query Range Percent Splice Strand
E(spl)mbeta-HLH-RA 131..718 17..606 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:59:53 Download gff for BS01022.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26005303..26005893 17..606 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:56:50 Download gff for BS01022.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21831025..21831615 17..606 99   Minus

BS01022.pep Sequence

Translation from 16 to 603

> BS01022.pep
MVLEMEMSKTYQYRKVMKPMLERKRRARINKCLDELKDIMVECLTQEGEH
ITRLEKADILELTVEHMKKLRAQKQLRLSSVTGGVSPSADPKLSIAESFR
AGYVHAANEVSKTLAAVPGVSVDLGTQLMSHLGHRLNYLQVVVPSLPIGV
PLQAPVEDQAMVTPPPSECDSLESGACSPAPSEASSTSGPMWRPW*

BS01022.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:31:56
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)mbeta-HLH-PA 195 CG14548-PA 1..195 1..195 999 100 Plus
E(spl)mgamma-HLH-PA 205 CG8333-PA 8..205 6..195 475 50.5 Plus
E(spl)m3-HLH-PA 224 CG8346-PA 3..224 5..195 422 45.5 Plus
E(spl)m7-HLH-PA 186 CG8361-PA 1..186 1..195 412 46.3 Plus
E(spl)mdelta-HLH-PA 173 CG8328-PA 9..173 7..195 308 40 Plus