Clone BS01023 Report

Search the DGRC for BS01023

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:10
Well:23
Vector:pDNR-Dual
Associated Gene/TranscriptTaf12-RA
Protein status:BS01023.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01023.3prime Sequence

623 bp (622 high quality bases) assembled on 2005-11-30

> BS01023.3prime
ATGGTCTAGAAAGCTTCGCTAGTATTTCTTGATCGTTTTCCGTATGAGGG
CAAGGCGCTGTTTGTGCGCCTCCGTGACAGCTGCCCGCTTGTAGGGACGC
AGTTCGTCCGTACCGAAGCCGGGTATCCACATGTTGTACTTCCGCTCAAA
GTGCAGCTGCACGTCGCGCACCTCGATCTTGTTAGACTTTCGGTGCTTGG
CGAAGGCGCTCGTCGACTTGACGGTGTCCTCGACAAAGTCGTCGATGATC
TGAAGCAGAAGCTCCTCAACATCCTCGTCCAGCTGCGTGGTGGTATCCAC
CTCTCGGACGAGCTCTGTGAGACGCGGTTTGGTAAGCATGGGAGTGTTCT
CGGAACCGGCGGCGGATGATGTGTGATTGGATGACTTGCTACCACCAGAT
ATGGGGCCCGTTCCCGTACCCAAACCGGAAACCGGTCCGCCGTTCTGCGA
GGATGAGTTGCTGTTGTTGGTCATCGGACTGTGCTGGGAGGGCGAGGCCA
TGGGTGGGTCGTGGAGCAGTCCGCTGGCGGACGATGTGGAGTTGTGGTTG
TGGTGCAGGTGGTGCTCGGCGACGCCGTTGCTATCGAAAGTGGTAAAGAG
ATCCGACATGTCGACTGATAACT

BS01023.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:43:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG17358-PB 591 Taf12-RB 1..591 609..19 2955 100 Minus
CG17358-PC 591 Taf12-RC 1..591 609..19 2955 100 Minus
CG17358-PA 591 Taf12-RA 1..591 609..19 2955 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:56:55
Subject Length Description Subject Range Query Range Score Percent Strand
Taf12-RA 1234 CG17358-RA 478..1068 609..19 2955 100 Minus
Taf12-RB 1066 CG17358-RB 310..900 609..19 2955 100 Minus
Taf12-RE 897 CG17358-RE 170..731 580..19 2810 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:56:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11678552..11678872 19..339 1605 100 Plus
3R 32079331 3R 11678944..11679213 340..609 1350 100 Plus
Blast to na_te.dros performed on 2015-02-11 11:56:53 has no hits.

BS01023.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:58:30 Download gff for BS01023.3prime
Subject Subject Range Query Range Percent Splice Strand
Taf12-PA 1..591 19..609 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:04:49 Download gff for BS01023.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17358-PA 1..591 19..609 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 20:34:45 Download gff for BS01023.3prime
Subject Subject Range Query Range Percent Splice Strand
Taf12-RB 306..906 11..616 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:21:43 Download gff for BS01023.3prime
Subject Subject Range Query Range Percent Splice Strand
Taf12-RB 306..906 11..616 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:21:43 Download gff for BS01023.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11678546..11678872 11..339 98 <- Plus
3R 11678944..11679217 340..616 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 20:34:45 Download gff for BS01023.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7504268..7504594 11..339 98 <- Plus
arm_3R 7504666..7504939 340..616 98   Plus

BS01023.5prime Sequence

623 bp (622 high quality bases) assembled on 2005-11-30

> BS01023.5prime
GAAGTTATCAGTCGACATGTCGGATCTCTTTACCACTTTCGATAGCAACG
GCGTCGCCGAGCACCACCTGCACCACAACCACAACTCCACATCGTCCGCC
AGCGGACTGCTCCACGACCCACCCATGGCCTCGCCCTCCCAGCACAGTCC
GATGACCAACAACAGCAACTCATCCTCGCAGAACGGCGGACCGGTTTCCG
GTTTGGGTACGGGAACGGGCCCCATATCTGGTGGTAGCAAGTCATCCAAT
CACACATCATCCGCCGCCGGTTCCGAGAACACTCCCATGCTTACCAAACC
GCGTCTCACAGAGCTCGTCCGAGAGGTGGATACCACCACGCAGCTGGACG
AGGATGTTGAGGAGCTTCTGCTTCAGATCATCGACGACTTTGTCGAGGAC
ACCGTCAAGTCGACGAGCGCCTTCGCCAAGCACCGAAAGTCTAACAAGAT
CGAGGTGCGCGACGTGCAGCTGCACTTTGAGCGGAAGTACAACATGTGGA
TACCCGGCTTCGGTACGGACGAACTGCGTCCCTACAAGCGGGCAGCTGTC
ACGGAGGCGCACAAACAGCGCCTTGCCCTCATACGGAAAACGATCAAGAA
ATACTAGCGAAGCTTTCTAGACC

BS01023.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:43:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG17358-PB 591 Taf12-RB 1..591 17..607 2955 100 Plus
CG17358-PC 591 Taf12-RC 1..591 17..607 2955 100 Plus
CG17358-PA 591 Taf12-RA 1..591 17..607 2955 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:22:04
Subject Length Description Subject Range Query Range Score Percent Strand
Taf12-RA 1234 CG17358-RA 478..1068 17..607 2955 100 Plus
Taf12-RB 1066 CG17358-RB 310..900 17..607 2955 100 Plus
Taf12-RE 897 CG17358-RE 170..731 46..607 2810 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:21:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11678552..11678872 607..287 1605 100 Minus
3R 32079331 3R 11678944..11679213 286..17 1350 100 Minus
Blast to na_te.dros performed on 2015-02-12 12:22:00 has no hits.

BS01023.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:58:32 Download gff for BS01023.5prime
Subject Subject Range Query Range Percent Splice Strand
Taf12-PA 1..591 17..607 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:04:51 Download gff for BS01023.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17358-PA 1..591 17..607 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:20:37 Download gff for BS01023.5prime
Subject Subject Range Query Range Percent Splice Strand
Taf12-RB 306..906 10..615 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:10:39 Download gff for BS01023.5prime
Subject Subject Range Query Range Percent Splice Strand
Taf12-RB 306..906 10..615 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:10:39 Download gff for BS01023.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11678944..11679217 10..286 98   Minus
3R 11678546..11678872 287..615 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:20:37 Download gff for BS01023.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7504268..7504594 287..615 98 <- Minus
arm_3R 7504666..7504939 10..286 98   Minus

BS01023.complete Sequence

625 bp (625 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634499

> BS01023.complete
GAAGTTATCAGTCGACATGTCGGATCTCTTTACCACTTTCGATAGCAACG
GCGTCGCCGAGCACCACCTGCACCACAACCACAACTCCACATCGTCCGCC
AGCGGACTGCTCCACGACCCACCCATGGCCTCGCCCTCCCAGCACAGTCC
GATGACCAACAACAGCAACTCATCCTCGCAGAACGGCGGACCGGTTTCCG
GTTTGGGTACGGGAACGGGCCCCATATCTGGTGGTAGCAAGTCATCCAAT
CACACATCATCCGCCGCCGGTTCCGAGAACACTCCCATGCTTACCAAACC
GCGTCTCACAGAGCTCGTCCGAGAGGTGGATACCACCACGCAGCTGGACG
AGGATGTTGAGGAGCTTCTGCTTCAGATCATCGACGACTTTGTCGAGGAC
ACCGTCAAGTCGACGAGCGCCTTCGCCAAGCACCGAAAGTCTAACAAGAT
CGAGGTGCGCGACGTGCAGCTGCACTTTGAGCGGAAGTACAACATGTGGA
TACCCGGCTTCGGTACGGACGAACTGCGTCCCTACAAGCGGGCAGCTGTC
ACGGAGGCGCACAAACAGCGCCTTGCCCTCATACGGAAAACGATCAAGAA
ATACTAGCGAAGCTTTCTAGACCAT

BS01023.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:52:04
Subject Length Description Subject Range Query Range Score Percent Strand
Taf12-RA 591 CG17358-PA 1..591 17..607 2955 100 Plus
Taf12-RB 591 CG17358-PB 1..591 17..607 2955 100 Plus
Taf12-RE 483 CG17358-PE 1..483 125..607 2415 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:52:06
Subject Length Description Subject Range Query Range Score Percent Strand
Taf12-RA 1234 CG17358-RA 478..1068 17..607 2955 100 Plus
Taf12-RB 1066 CG17358-RB 310..900 17..607 2955 100 Plus
Taf12-RE 897 CG17358-RE 170..731 46..607 2810 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:52:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11678552..11678872 607..287 1605 100 Minus
3R 32079331 3R 11678944..11679213 286..17 1350 100 Minus
Blast to na_te.dros performed on 2014-11-27 19:52:03 has no hits.

BS01023.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:44 Download gff for BS01023.complete
Subject Subject Range Query Range Percent Splice Strand
Taf12-RA 1..591 17..607 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:22:05 Download gff for BS01023.complete
Subject Subject Range Query Range Percent Splice Strand
Taf12-RA 422..1022 10..615 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:02 Download gff for BS01023.complete
Subject Subject Range Query Range Percent Splice Strand
Taf12-RB 310..902 17..609 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:45 Download gff for BS01023.complete
Subject Subject Range Query Range Percent Splice Strand
Taf12-RA 422..1022 10..615 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:09:48 Download gff for BS01023.complete
Subject Subject Range Query Range Percent Splice Strand
Taf12-RB 310..902 17..609 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:09:48 Download gff for BS01023.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11678550..11678872 287..609 99 <- Minus
3R 11678944..11679213 17..286 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:02 Download gff for BS01023.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7504666..7504935 17..286 100   Minus
arm_3R 7504272..7504594 287..609 99 <- Minus

BS01023.pep Sequence

Translation from 16 to 606

> BS01023.pep
MSDLFTTFDSNGVAEHHLHHNHNSTSSASGLLHDPPMASPSQHSPMTNNS
NSSSQNGGPVSGLGTGTGPISGGSKSSNHTSSAAGSENTPMLTKPRLTEL
VREVDTTTQLDEDVEELLLQIIDDFVEDTVKSTSAFAKHRKSNKIEVRDV
QLHFERKYNMWIPGFGTDELRPYKRAAVTEAHKQRLALIRKTIKKY*

BS01023.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:31:49
Subject Length Description Subject Range Query Range Score Percent Strand
Taf12-PA 196 CG17358-PA 1..196 1..196 1018 100 Plus
Taf12-PB 196 CG17358-PB 1..196 1..196 1018 100 Plus
Taf12-PE 160 CG17358-PE 1..160 37..196 819 100 Plus
Taf12-PD 160 CG17358-PD 1..160 37..196 819 100 Plus