Clone Sequence Records
BS01023.3prime Sequence
623 bp (622 high quality bases) assembled on 2005-11-30
> BS01023.3prime
ATGGTCTAGAAAGCTTCGCTAGTATTTCTTGATCGTTTTCCGTATGAGGG
CAAGGCGCTGTTTGTGCGCCTCCGTGACAGCTGCCCGCTTGTAGGGACGC
AGTTCGTCCGTACCGAAGCCGGGTATCCACATGTTGTACTTCCGCTCAAA
GTGCAGCTGCACGTCGCGCACCTCGATCTTGTTAGACTTTCGGTGCTTGG
CGAAGGCGCTCGTCGACTTGACGGTGTCCTCGACAAAGTCGTCGATGATC
TGAAGCAGAAGCTCCTCAACATCCTCGTCCAGCTGCGTGGTGGTATCCAC
CTCTCGGACGAGCTCTGTGAGACGCGGTTTGGTAAGCATGGGAGTGTTCT
CGGAACCGGCGGCGGATGATGTGTGATTGGATGACTTGCTACCACCAGAT
ATGGGGCCCGTTCCCGTACCCAAACCGGAAACCGGTCCGCCGTTCTGCGA
GGATGAGTTGCTGTTGTTGGTCATCGGACTGTGCTGGGAGGGCGAGGCCA
TGGGTGGGTCGTGGAGCAGTCCGCTGGCGGACGATGTGGAGTTGTGGTTG
TGGTGCAGGTGGTGCTCGGCGACGCCGTTGCTATCGAAAGTGGTAAAGAG
ATCCGACATGTCGACTGATAACT
BS01023.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:43:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17358-PB | 591 | Taf12-RB | 1..591 | 609..19 | 2955 | 100 | Minus |
CG17358-PC | 591 | Taf12-RC | 1..591 | 609..19 | 2955 | 100 | Minus |
CG17358-PA | 591 | Taf12-RA | 1..591 | 609..19 | 2955 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:56:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Taf12-RA | 1234 | CG17358-RA | 478..1068 | 609..19 | 2955 | 100 | Minus |
Taf12-RB | 1066 | CG17358-RB | 310..900 | 609..19 | 2955 | 100 | Minus |
Taf12-RE | 897 | CG17358-RE | 170..731 | 580..19 | 2810 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:56:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11678552..11678872 | 19..339 | 1605 | 100 | Plus |
3R | 32079331 | 3R | 11678944..11679213 | 340..609 | 1350 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:56:53 has no hits.
BS01023.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:58:30 Download gff for
BS01023.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf12-PA | 1..591 | 19..609 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:04:49 Download gff for
BS01023.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17358-PA | 1..591 | 19..609 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 20:34:45 Download gff for
BS01023.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf12-RB | 306..906 | 11..616 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:21:43 Download gff for
BS01023.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf12-RB | 306..906 | 11..616 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:21:43 Download gff for
BS01023.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11678546..11678872 | 11..339 | 98 | <- | Plus |
3R | 11678944..11679217 | 340..616 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 20:34:45 Download gff for
BS01023.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7504268..7504594 | 11..339 | 98 | <- | Plus |
arm_3R | 7504666..7504939 | 340..616 | 98 | | Plus |
BS01023.5prime Sequence
623 bp (622 high quality bases) assembled on 2005-11-30
> BS01023.5prime
GAAGTTATCAGTCGACATGTCGGATCTCTTTACCACTTTCGATAGCAACG
GCGTCGCCGAGCACCACCTGCACCACAACCACAACTCCACATCGTCCGCC
AGCGGACTGCTCCACGACCCACCCATGGCCTCGCCCTCCCAGCACAGTCC
GATGACCAACAACAGCAACTCATCCTCGCAGAACGGCGGACCGGTTTCCG
GTTTGGGTACGGGAACGGGCCCCATATCTGGTGGTAGCAAGTCATCCAAT
CACACATCATCCGCCGCCGGTTCCGAGAACACTCCCATGCTTACCAAACC
GCGTCTCACAGAGCTCGTCCGAGAGGTGGATACCACCACGCAGCTGGACG
AGGATGTTGAGGAGCTTCTGCTTCAGATCATCGACGACTTTGTCGAGGAC
ACCGTCAAGTCGACGAGCGCCTTCGCCAAGCACCGAAAGTCTAACAAGAT
CGAGGTGCGCGACGTGCAGCTGCACTTTGAGCGGAAGTACAACATGTGGA
TACCCGGCTTCGGTACGGACGAACTGCGTCCCTACAAGCGGGCAGCTGTC
ACGGAGGCGCACAAACAGCGCCTTGCCCTCATACGGAAAACGATCAAGAA
ATACTAGCGAAGCTTTCTAGACC
BS01023.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:43:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17358-PB | 591 | Taf12-RB | 1..591 | 17..607 | 2955 | 100 | Plus |
CG17358-PC | 591 | Taf12-RC | 1..591 | 17..607 | 2955 | 100 | Plus |
CG17358-PA | 591 | Taf12-RA | 1..591 | 17..607 | 2955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:22:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Taf12-RA | 1234 | CG17358-RA | 478..1068 | 17..607 | 2955 | 100 | Plus |
Taf12-RB | 1066 | CG17358-RB | 310..900 | 17..607 | 2955 | 100 | Plus |
Taf12-RE | 897 | CG17358-RE | 170..731 | 46..607 | 2810 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:21:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11678552..11678872 | 607..287 | 1605 | 100 | Minus |
3R | 32079331 | 3R | 11678944..11679213 | 286..17 | 1350 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:22:00 has no hits.
BS01023.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:58:32 Download gff for
BS01023.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf12-PA | 1..591 | 17..607 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:04:51 Download gff for
BS01023.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17358-PA | 1..591 | 17..607 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:20:37 Download gff for
BS01023.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf12-RB | 306..906 | 10..615 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:10:39 Download gff for
BS01023.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf12-RB | 306..906 | 10..615 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:10:39 Download gff for
BS01023.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11678944..11679217 | 10..286 | 98 | | Minus |
3R | 11678546..11678872 | 287..615 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:20:37 Download gff for
BS01023.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7504268..7504594 | 287..615 | 98 | <- | Minus |
arm_3R | 7504666..7504939 | 10..286 | 98 | | Minus |
BS01023.complete Sequence
625 bp (625 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634499
> BS01023.complete
GAAGTTATCAGTCGACATGTCGGATCTCTTTACCACTTTCGATAGCAACG
GCGTCGCCGAGCACCACCTGCACCACAACCACAACTCCACATCGTCCGCC
AGCGGACTGCTCCACGACCCACCCATGGCCTCGCCCTCCCAGCACAGTCC
GATGACCAACAACAGCAACTCATCCTCGCAGAACGGCGGACCGGTTTCCG
GTTTGGGTACGGGAACGGGCCCCATATCTGGTGGTAGCAAGTCATCCAAT
CACACATCATCCGCCGCCGGTTCCGAGAACACTCCCATGCTTACCAAACC
GCGTCTCACAGAGCTCGTCCGAGAGGTGGATACCACCACGCAGCTGGACG
AGGATGTTGAGGAGCTTCTGCTTCAGATCATCGACGACTTTGTCGAGGAC
ACCGTCAAGTCGACGAGCGCCTTCGCCAAGCACCGAAAGTCTAACAAGAT
CGAGGTGCGCGACGTGCAGCTGCACTTTGAGCGGAAGTACAACATGTGGA
TACCCGGCTTCGGTACGGACGAACTGCGTCCCTACAAGCGGGCAGCTGTC
ACGGAGGCGCACAAACAGCGCCTTGCCCTCATACGGAAAACGATCAAGAA
ATACTAGCGAAGCTTTCTAGACCAT
BS01023.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:52:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Taf12-RA | 591 | CG17358-PA | 1..591 | 17..607 | 2955 | 100 | Plus |
Taf12-RB | 591 | CG17358-PB | 1..591 | 17..607 | 2955 | 100 | Plus |
Taf12-RE | 483 | CG17358-PE | 1..483 | 125..607 | 2415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:52:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Taf12-RA | 1234 | CG17358-RA | 478..1068 | 17..607 | 2955 | 100 | Plus |
Taf12-RB | 1066 | CG17358-RB | 310..900 | 17..607 | 2955 | 100 | Plus |
Taf12-RE | 897 | CG17358-RE | 170..731 | 46..607 | 2810 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:52:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11678552..11678872 | 607..287 | 1605 | 100 | Minus |
3R | 32079331 | 3R | 11678944..11679213 | 286..17 | 1350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:52:03 has no hits.
BS01023.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:44 Download gff for
BS01023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf12-RA | 1..591 | 17..607 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:22:05 Download gff for
BS01023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf12-RA | 422..1022 | 10..615 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:02 Download gff for
BS01023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf12-RB | 310..902 | 17..609 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:45 Download gff for
BS01023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf12-RA | 422..1022 | 10..615 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:09:48 Download gff for
BS01023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf12-RB | 310..902 | 17..609 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:09:48 Download gff for
BS01023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11678550..11678872 | 287..609 | 99 | <- | Minus |
3R | 11678944..11679213 | 17..286 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:02 Download gff for
BS01023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7504666..7504935 | 17..286 | 100 | | Minus |
arm_3R | 7504272..7504594 | 287..609 | 99 | <- | Minus |
BS01023.pep Sequence
Translation from 16 to 606
> BS01023.pep
MSDLFTTFDSNGVAEHHLHHNHNSTSSASGLLHDPPMASPSQHSPMTNNS
NSSSQNGGPVSGLGTGTGPISGGSKSSNHTSSAAGSENTPMLTKPRLTEL
VREVDTTTQLDEDVEELLLQIIDDFVEDTVKSTSAFAKHRKSNKIEVRDV
QLHFERKYNMWIPGFGTDELRPYKRAAVTEAHKQRLALIRKTIKKY*
BS01023.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:31:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Taf12-PA | 196 | CG17358-PA | 1..196 | 1..196 | 1018 | 100 | Plus |
Taf12-PB | 196 | CG17358-PB | 1..196 | 1..196 | 1018 | 100 | Plus |
Taf12-PE | 160 | CG17358-PE | 1..160 | 37..196 | 819 | 100 | Plus |
Taf12-PD | 160 | CG17358-PD | 1..160 | 37..196 | 819 | 100 | Plus |