Clone BS01026 Report

Search the DGRC for BS01026

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:10
Well:26
Vector:pDNR-Dual
Associated Gene/TranscriptCG10344-RA
Protein status:BS01026.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01026.3prime Sequence

629 bp (628 high quality bases) assembled on 2005-11-30

> BS01026.3prime
ATGGTCTAGAAAGCTTCGTTAAAACAATGGGCACATGGTAGGCCAGGAGG
AGGACTCCATAAGCCAGAGCAGGTGTAACATGGGGCAGGCGAGTTTTAAC
ACCGTCACCCAGTTGCTGTAGATGTGGCCGTGGATGACCCACATGTATAT
GGAGTTGTACACCAGTGCGTAAACTGATCCCACGAAGAGATAGAATATAA
AGCCCATGAAGAAGCGATGGTTTCTGAGTCCAATGCAGCAGCCGGTGTAG
ATACAGTGGTGATCCCGCTTCAGAATGCACACTTTGCAGGCCTTGCAATG
CCAAGATCTGGGTGGTGCTAGCTTCTGGCACTCGCCGCACTCACGCCAAT
TCAACTGATCCGATGGTGGTTCCACCTTTTTCACATTTACACTTGTGTCA
ATCATCATGCAGGCAATCATGTTTCCCTTGATGTTAAACACCAGGAACAT
GGCCATAAGAAAGGTGAAGGTGTGGAAGAAGCCACCCGGTTCATGGAAGG
CAGGCAGCACCACCACAATCTCGAACATAAACACCACCGGGAGAAAGACC
GCAATGATGAGGAAGCACAAGATGTCCACCATCCGGCTGGGCATTGGGTT
GCTCCGGATTCTCATGTCGACTGATAACT

BS01026.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:43:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG10344-PA 597 CG10344-RA 1..597 615..19 2985 100 Minus
CG10344-PB 837 CG10344-RB 1..546 615..70 2730 100 Minus
CG10344-PB 837 CG10344-RB 604..655 70..19 260 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:11:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG10344-RA 1132 CG10344-RA 64..661 616..19 2990 100 Minus
CG10344-RB 1190 CG10344-RB 64..610 616..70 2735 100 Minus
CG10344-RB 1190 CG10344-RB 668..719 70..19 260 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:11:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22426313..22426627 70..384 1575 100 Plus
2R 25286936 2R 22426682..22426914 384..616 1165 100 Plus
2R 25286936 2R 22426204..22426255 19..70 260 100 Plus
Blast to na_te.dros performed on 2015-02-11 12:11:34 has no hits.

BS01026.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:58:35 Download gff for BS01026.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10344-PA 1..597 19..615 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:04:55 Download gff for BS01026.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10344-PA 1..597 19..615 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:41:13 Download gff for BS01026.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10344-RA 57..666 13..623 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:52:07 Download gff for BS01026.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10344-RA 57..666 13..623 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:52:07 Download gff for BS01026.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22426199..22426254 13..69 94 <- Plus
2R 22426313..22426626 70..383 100 <- Plus
2R 22426682..22426919 384..623 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:41:13 Download gff for BS01026.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18313704..18313759 13..69 94 <- Plus
arm_2R 18313818..18314131 70..383 100 <- Plus
arm_2R 18314187..18314424 384..623 98   Plus

BS01026.5prime Sequence

629 bp (628 high quality bases) assembled on 2005-11-30

> BS01026.5prime
GAAGTTATCAGTCGACATGAGAATCCGGAGCAACCCAATGCCCAGCCGGA
TGGTGGACATCTTGTGCTTCCTCATCATTGCGGTCTTTCTCCCGGTGGTG
TTTATGTTCGAGATTGTGGTGGTGCTGCCTGCCTTCCATGAACCGGGTGG
CTTCTTCCACACCTTCACCTTTCTTATGGCCATGTTCCTGGTGTTTAACA
TCAAGGGAAACATGATTGCCTGCATGATGATTGACACAAGTGTAAATGTG
AAAAAGGTGGAACCACCATCGGATCAGTTGAATTGGCGTGAGTGCGGCGA
GTGCCAGAAGCTAGCACCACCCAGATCTTGGCATTGCAAGGCCTGCAAAG
TGTGCATTCTGAAGCGGGATCACCACTGTATCTACACCGGCTGCTGCATT
GGACTCAGAAACCATCGCTTCTTCATGGGCTTTATATTCTATCTCTTCGT
GGGATCAGTTTACGCACTGGTGTACAACTCCATATACATGTGGGTCATCC
ACGGCCACATCTACAGCAACTGGGTGACGGTGTTAAAACTCGCCTGCCCC
ATGTTACACCTGCTCTGGCTTATGGAGTCCTCCTCCTGGCCTACCATGTG
CCCATTGTTTTAACGAAGCTTTCTAGACC

BS01026.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:43:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG10344-PA 597 CG10344-RA 1..597 17..613 2985 100 Plus
CG10344-PB 837 CG10344-RB 1..546 17..562 2730 100 Plus
CG10344-PB 837 CG10344-RB 604..655 562..613 260 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:13:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG10344-RA 1132 CG10344-RA 64..661 16..613 2990 100 Plus
CG10344-RB 1190 CG10344-RB 64..610 16..562 2735 100 Plus
CG10344-RB 1190 CG10344-RB 668..719 562..613 260 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:12:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22426313..22426627 562..248 1575 100 Minus
2R 25286936 2R 22426682..22426914 248..16 1165 100 Minus
2R 25286936 2R 22426204..22426255 613..562 260 100 Minus
Blast to na_te.dros performed on 2015-02-04 04:12:57 has no hits.

BS01026.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:58:36 Download gff for BS01026.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10344-PA 1..597 17..613 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:04:56 Download gff for BS01026.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10344-PA 1..597 17..613 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 05:08:42 Download gff for BS01026.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10344-RA 57..666 9..619 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:50:11 Download gff for BS01026.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10344-RA 57..666 9..619 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:50:11 Download gff for BS01026.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22426199..22426254 563..619 94 <- Minus
2R 22426313..22426626 249..562 100 <- Minus
2R 22426682..22426919 9..248 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 05:08:42 Download gff for BS01026.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18313704..18313759 563..619 94 <- Minus
arm_2R 18313818..18314131 249..562 100 <- Minus
arm_2R 18314187..18314424 9..248 98   Minus

BS01026.complete Sequence

631 bp (631 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634500

> BS01026.complete
GAAGTTATCAGTCGACATGAGAATCCGGAGCAACCCAATGCCCAGCCGGA
TGGTGGACATCTTGTGCTTCCTCATCATTGCGGTCTTTCTCCCGGTGGTG
TTTATGTTCGAGATTGTGGTGGTGCTGCCTGCCTTCCATGAACCGGGTGG
CTTCTTCCACACCTTCACCTTTCTTATGGCCATGTTCCTGGTGTTTAACA
TCAAGGGAAACATGATTGCCTGCATGATGATTGACACAAGTGTAAATGTG
AAAAAGGTGGAACCACCATCGGATCAGTTGAATTGGCGTGAGTGCGGCGA
GTGCCAGAAGCTAGCACCACCCAGATCTTGGCATTGCAAGGCCTGCAAAG
TGTGCATTCTGAAGCGGGATCACCACTGTATCTACACCGGCTGCTGCATT
GGACTCAGAAACCATCGCTTCTTCATGGGCTTTATATTCTATCTCTTCGT
GGGATCAGTTTACGCACTGGTGTACAACTCCATATACATGTGGGTCATCC
ACGGCCACATCTACAGCAACTGGGTGACGGTGTTAAAACTCGCCTGCCCC
ATGTTACACCTGCTCTGGCTTATGGAGTCCTCCTCCTGGCCTACCATGTG
CCCATTGTTTTAACGAAGCTTTCTAGACCAT

BS01026.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:25:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG10344-RA 597 CG10344-PA 1..597 17..613 2985 100 Plus
CG10344-RB 837 CG10344-PB 1..546 17..562 2730 100 Plus
CG10344-RB 837 CG10344-PB 604..655 562..613 260 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:25:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG10344-RA 1132 CG10344-RA 64..661 16..613 2990 100 Plus
CG10344-RB 1190 CG10344-RB 64..610 16..562 2735 100 Plus
CG10344-RB 1190 CG10344-RB 668..719 562..613 260 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:25:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22426313..22426627 562..248 1575 100 Minus
2R 25286936 2R 22426682..22426914 248..16 1165 100 Minus
2R 25286936 2R 22426204..22426255 613..562 260 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:25:44 has no hits.

BS01026.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:46 Download gff for BS01026.complete
Subject Subject Range Query Range Percent Splice Strand
CG10344-RA 1..597 17..613 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:22:06 Download gff for BS01026.complete
Subject Subject Range Query Range Percent Splice Strand
CG10344-RA 45..654 9..619 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:41:28 Download gff for BS01026.complete
Subject Subject Range Query Range Percent Splice Strand
CG10344-RA 65..662 17..615 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:46 Download gff for BS01026.complete
Subject Subject Range Query Range Percent Splice Strand
CG10344-RA 45..654 9..619 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:15 Download gff for BS01026.complete
Subject Subject Range Query Range Percent Splice Strand
CG10344-RA 65..662 17..615 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:18:15 Download gff for BS01026.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22426202..22426254 563..615 98 <- Minus
2R 22426313..22426626 249..562 100 <- Minus
2R 22426682..22426913 17..248 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:41:28 Download gff for BS01026.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18313818..18314131 249..562 100 <- Minus
arm_2R 18313707..18313759 563..615 98 <- Minus
arm_2R 18314187..18314418 17..248 100   Minus

BS01026.pep Sequence

Translation from 16 to 612

> BS01026.pep
MRIRSNPMPSRMVDILCFLIIAVFLPVVFMFEIVVVLPAFHEPGGFFHTF
TFLMAMFLVFNIKGNMIACMMIDTSVNVKKVEPPSDQLNWRECGECQKLA
PPRSWHCKACKVCILKRDHHCIYTGCCIGLRNHRFFMGFIFYLFVGSVYA
LVYNSIYMWVIHGHIYSNWVTVLKLACPMLHLLWLMESSSWPTMCPLF*

BS01026.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:31:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG10344-PA 198 CG10344-PA 1..198 1..198 1104 100 Plus
CG10344-PB 278 CG10344-PB 1..195 1..198 1014 93.9 Plus
CG4676-PA 284 CG4676-PA 12..194 9..191 496 44.1 Plus
CG18810-PA 300 CG18810-PA 1..172 1..166 341 36.6 Plus
CG4956-PA 302 CG4956-PA 45..191 17..159 341 42.2 Plus