Clone Sequence Records
BS01026.3prime Sequence
629 bp (628 high quality bases) assembled on 2005-11-30
> BS01026.3prime
ATGGTCTAGAAAGCTTCGTTAAAACAATGGGCACATGGTAGGCCAGGAGG
AGGACTCCATAAGCCAGAGCAGGTGTAACATGGGGCAGGCGAGTTTTAAC
ACCGTCACCCAGTTGCTGTAGATGTGGCCGTGGATGACCCACATGTATAT
GGAGTTGTACACCAGTGCGTAAACTGATCCCACGAAGAGATAGAATATAA
AGCCCATGAAGAAGCGATGGTTTCTGAGTCCAATGCAGCAGCCGGTGTAG
ATACAGTGGTGATCCCGCTTCAGAATGCACACTTTGCAGGCCTTGCAATG
CCAAGATCTGGGTGGTGCTAGCTTCTGGCACTCGCCGCACTCACGCCAAT
TCAACTGATCCGATGGTGGTTCCACCTTTTTCACATTTACACTTGTGTCA
ATCATCATGCAGGCAATCATGTTTCCCTTGATGTTAAACACCAGGAACAT
GGCCATAAGAAAGGTGAAGGTGTGGAAGAAGCCACCCGGTTCATGGAAGG
CAGGCAGCACCACCACAATCTCGAACATAAACACCACCGGGAGAAAGACC
GCAATGATGAGGAAGCACAAGATGTCCACCATCCGGCTGGGCATTGGGTT
GCTCCGGATTCTCATGTCGACTGATAACT
BS01026.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:43:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10344-PA | 597 | CG10344-RA | 1..597 | 615..19 | 2985 | 100 | Minus |
CG10344-PB | 837 | CG10344-RB | 1..546 | 615..70 | 2730 | 100 | Minus |
CG10344-PB | 837 | CG10344-RB | 604..655 | 70..19 | 260 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:11:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10344-RA | 1132 | CG10344-RA | 64..661 | 616..19 | 2990 | 100 | Minus |
CG10344-RB | 1190 | CG10344-RB | 64..610 | 616..70 | 2735 | 100 | Minus |
CG10344-RB | 1190 | CG10344-RB | 668..719 | 70..19 | 260 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:11:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22426313..22426627 | 70..384 | 1575 | 100 | Plus |
2R | 25286936 | 2R | 22426682..22426914 | 384..616 | 1165 | 100 | Plus |
2R | 25286936 | 2R | 22426204..22426255 | 19..70 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 12:11:34 has no hits.
BS01026.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:58:35 Download gff for
BS01026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10344-PA | 1..597 | 19..615 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:04:55 Download gff for
BS01026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10344-PA | 1..597 | 19..615 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:41:13 Download gff for
BS01026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10344-RA | 57..666 | 13..623 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:52:07 Download gff for
BS01026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10344-RA | 57..666 | 13..623 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:52:07 Download gff for
BS01026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22426199..22426254 | 13..69 | 94 | <- | Plus |
2R | 22426313..22426626 | 70..383 | 100 | <- | Plus |
2R | 22426682..22426919 | 384..623 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:41:13 Download gff for
BS01026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18313704..18313759 | 13..69 | 94 | <- | Plus |
arm_2R | 18313818..18314131 | 70..383 | 100 | <- | Plus |
arm_2R | 18314187..18314424 | 384..623 | 98 | | Plus |
BS01026.5prime Sequence
629 bp (628 high quality bases) assembled on 2005-11-30
> BS01026.5prime
GAAGTTATCAGTCGACATGAGAATCCGGAGCAACCCAATGCCCAGCCGGA
TGGTGGACATCTTGTGCTTCCTCATCATTGCGGTCTTTCTCCCGGTGGTG
TTTATGTTCGAGATTGTGGTGGTGCTGCCTGCCTTCCATGAACCGGGTGG
CTTCTTCCACACCTTCACCTTTCTTATGGCCATGTTCCTGGTGTTTAACA
TCAAGGGAAACATGATTGCCTGCATGATGATTGACACAAGTGTAAATGTG
AAAAAGGTGGAACCACCATCGGATCAGTTGAATTGGCGTGAGTGCGGCGA
GTGCCAGAAGCTAGCACCACCCAGATCTTGGCATTGCAAGGCCTGCAAAG
TGTGCATTCTGAAGCGGGATCACCACTGTATCTACACCGGCTGCTGCATT
GGACTCAGAAACCATCGCTTCTTCATGGGCTTTATATTCTATCTCTTCGT
GGGATCAGTTTACGCACTGGTGTACAACTCCATATACATGTGGGTCATCC
ACGGCCACATCTACAGCAACTGGGTGACGGTGTTAAAACTCGCCTGCCCC
ATGTTACACCTGCTCTGGCTTATGGAGTCCTCCTCCTGGCCTACCATGTG
CCCATTGTTTTAACGAAGCTTTCTAGACC
BS01026.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:43:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10344-PA | 597 | CG10344-RA | 1..597 | 17..613 | 2985 | 100 | Plus |
CG10344-PB | 837 | CG10344-RB | 1..546 | 17..562 | 2730 | 100 | Plus |
CG10344-PB | 837 | CG10344-RB | 604..655 | 562..613 | 260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:13:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10344-RA | 1132 | CG10344-RA | 64..661 | 16..613 | 2990 | 100 | Plus |
CG10344-RB | 1190 | CG10344-RB | 64..610 | 16..562 | 2735 | 100 | Plus |
CG10344-RB | 1190 | CG10344-RB | 668..719 | 562..613 | 260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:12:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22426313..22426627 | 562..248 | 1575 | 100 | Minus |
2R | 25286936 | 2R | 22426682..22426914 | 248..16 | 1165 | 100 | Minus |
2R | 25286936 | 2R | 22426204..22426255 | 613..562 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 04:12:57 has no hits.
BS01026.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:58:36 Download gff for
BS01026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10344-PA | 1..597 | 17..613 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:04:56 Download gff for
BS01026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10344-PA | 1..597 | 17..613 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 05:08:42 Download gff for
BS01026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10344-RA | 57..666 | 9..619 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:50:11 Download gff for
BS01026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10344-RA | 57..666 | 9..619 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:50:11 Download gff for
BS01026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22426199..22426254 | 563..619 | 94 | <- | Minus |
2R | 22426313..22426626 | 249..562 | 100 | <- | Minus |
2R | 22426682..22426919 | 9..248 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 05:08:42 Download gff for
BS01026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18313704..18313759 | 563..619 | 94 | <- | Minus |
arm_2R | 18313818..18314131 | 249..562 | 100 | <- | Minus |
arm_2R | 18314187..18314424 | 9..248 | 98 | | Minus |
BS01026.complete Sequence
631 bp (631 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634500
> BS01026.complete
GAAGTTATCAGTCGACATGAGAATCCGGAGCAACCCAATGCCCAGCCGGA
TGGTGGACATCTTGTGCTTCCTCATCATTGCGGTCTTTCTCCCGGTGGTG
TTTATGTTCGAGATTGTGGTGGTGCTGCCTGCCTTCCATGAACCGGGTGG
CTTCTTCCACACCTTCACCTTTCTTATGGCCATGTTCCTGGTGTTTAACA
TCAAGGGAAACATGATTGCCTGCATGATGATTGACACAAGTGTAAATGTG
AAAAAGGTGGAACCACCATCGGATCAGTTGAATTGGCGTGAGTGCGGCGA
GTGCCAGAAGCTAGCACCACCCAGATCTTGGCATTGCAAGGCCTGCAAAG
TGTGCATTCTGAAGCGGGATCACCACTGTATCTACACCGGCTGCTGCATT
GGACTCAGAAACCATCGCTTCTTCATGGGCTTTATATTCTATCTCTTCGT
GGGATCAGTTTACGCACTGGTGTACAACTCCATATACATGTGGGTCATCC
ACGGCCACATCTACAGCAACTGGGTGACGGTGTTAAAACTCGCCTGCCCC
ATGTTACACCTGCTCTGGCTTATGGAGTCCTCCTCCTGGCCTACCATGTG
CCCATTGTTTTAACGAAGCTTTCTAGACCAT
BS01026.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:25:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10344-RA | 597 | CG10344-PA | 1..597 | 17..613 | 2985 | 100 | Plus |
CG10344-RB | 837 | CG10344-PB | 1..546 | 17..562 | 2730 | 100 | Plus |
CG10344-RB | 837 | CG10344-PB | 604..655 | 562..613 | 260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:25:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10344-RA | 1132 | CG10344-RA | 64..661 | 16..613 | 2990 | 100 | Plus |
CG10344-RB | 1190 | CG10344-RB | 64..610 | 16..562 | 2735 | 100 | Plus |
CG10344-RB | 1190 | CG10344-RB | 668..719 | 562..613 | 260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:25:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22426313..22426627 | 562..248 | 1575 | 100 | Minus |
2R | 25286936 | 2R | 22426682..22426914 | 248..16 | 1165 | 100 | Minus |
2R | 25286936 | 2R | 22426204..22426255 | 613..562 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:25:44 has no hits.
BS01026.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:46 Download gff for
BS01026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10344-RA | 1..597 | 17..613 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:22:06 Download gff for
BS01026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10344-RA | 45..654 | 9..619 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:41:28 Download gff for
BS01026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10344-RA | 65..662 | 17..615 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:46 Download gff for
BS01026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10344-RA | 45..654 | 9..619 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:15 Download gff for
BS01026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10344-RA | 65..662 | 17..615 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:18:15 Download gff for
BS01026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22426202..22426254 | 563..615 | 98 | <- | Minus |
2R | 22426313..22426626 | 249..562 | 100 | <- | Minus |
2R | 22426682..22426913 | 17..248 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:41:28 Download gff for
BS01026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18313818..18314131 | 249..562 | 100 | <- | Minus |
arm_2R | 18313707..18313759 | 563..615 | 98 | <- | Minus |
arm_2R | 18314187..18314418 | 17..248 | 100 | | Minus |
BS01026.pep Sequence
Translation from 16 to 612
> BS01026.pep
MRIRSNPMPSRMVDILCFLIIAVFLPVVFMFEIVVVLPAFHEPGGFFHTF
TFLMAMFLVFNIKGNMIACMMIDTSVNVKKVEPPSDQLNWRECGECQKLA
PPRSWHCKACKVCILKRDHHCIYTGCCIGLRNHRFFMGFIFYLFVGSVYA
LVYNSIYMWVIHGHIYSNWVTVLKLACPMLHLLWLMESSSWPTMCPLF*
BS01026.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:31:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10344-PA | 198 | CG10344-PA | 1..198 | 1..198 | 1104 | 100 | Plus |
CG10344-PB | 278 | CG10344-PB | 1..195 | 1..198 | 1014 | 93.9 | Plus |
CG4676-PA | 284 | CG4676-PA | 12..194 | 9..191 | 496 | 44.1 | Plus |
CG18810-PA | 300 | CG18810-PA | 1..172 | 1..166 | 341 | 36.6 | Plus |
CG4956-PA | 302 | CG4956-PA | 45..191 | 17..159 | 341 | 42.2 | Plus |